Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-155 |
| Cow position: | chr26:8222369-8222206 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-196 |
| Cow position: | chr26:13832626-13832820 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 1-207 |
| Cow position: | chr26:9836068-9835860 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 159 |
| Conread position: | 1-258 |
| Cow position: | chr26:887716-887456 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 1-259 |
| Cow position: | chr26:25807017-25806761 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 207, 132 |
| Conread position: | 1-262 |
| Cow position: | chr26:2610477-2610738 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 69, 25 |
| Conread position: | 1-265 |
| Cow position: | chr26:26228692-26228425 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 124, 67 |
| Conread position: | 1-270 |
| Cow position: | chr26:5198356-5198090 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 122, 18 |
| Conread position: | 1-272 |
| Cow position: | chr26:7522486-7522768 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1-274 |
| Cow position: | chr26:7479439-7479710 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 1-288 |
| Cow position: | chr26:27137653-27137954 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 109, 63 |
| Conread position: | 1-315 |
| Cow position: | chr26:30324705-30325014 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 142, 25 |
| Conread position: | 1-319 |
| Cow position: | chr26:18340288-18339965 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 1-328 |
| Cow position: | chr26:26226774-26226445 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 124, 157 |
| Conread position: | 1-333 |
| Cow position: | chr26:14173657-14173319 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 69, 30 |
| Conread position: | 1-333 |
| Cow position: | chr26:19536657-19536321 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 1-337 |
| Cow position: | chr26:35148289-35148624 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 1-338 |
| Cow position: | chr26:7603654-7604001 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 98, 69 |
| Conread position: | 2-284 |
| Cow position: | chr26:10124567-10124840 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 2-339 |
| Cow position: | chr26:34552512-34552849 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 86, 62 |
| Conread position: | 2-344 |
| Cow position: | chr26:17573468-17573134 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 123, 73 |
| Conread position: | 3-335 |
| Cow position: | chr26:19563752-19564084 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 128, 7 |
| Conread position: | 3-338 |
| Cow position: | chr26:2202123-2201781 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 157 |
| Conread position: | 5-255 |
| Cow position: | chr26:16720067-16719813 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 120, 70 |
| Conread position: | 6-201 |
| Cow position: | chr26:9825540-9825735 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 119, 32 |
| Conread position: | 7-205 |
| Cow position: | chr26:30652788-30652982 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 24 |
| Conread position: | 7-268 |
| Cow position: | chr26:6476086-6476350 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 11-292 |
| Cow position: | chr26:16508648-16508364 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 117, 25 |
| Conread position: | 11-301 |
| Cow position: | chr26:17538531-17538238 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 113, 33 |
| Conread position: | 11-337 |
| Cow position: | chr26:4111700-4112026 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 72, 149 |
| Conread position: | 12-193 |
| Cow position: | chr26:27993058-27993236 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 12-255 |
| Cow position: | chr26:25393372-25393125 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 56 |
| Conread position: | 12-281 |
| Cow position: | chr26:26238585-26238312 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 61, 149 |
| Conread position: | 12-304 |
| Cow position: | chr26:34606410-34606708 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 12-307 |
| Cow position: | chr26:29488673-29488374 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 12-331 |
| Cow position: | chr26:25340351-25340677 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 12-332 |
| Cow position: | chr26:15892566-15892236 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 153 |
| Conread position: | 12-344 |
| Cow position: | chr26:7307568-7307234 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 113, 101 |
| Conread position: | 12-355 |
| Cow position: | chr26:21579213-21578869 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 55 |
| Conread position: | 13-207 |
| Cow position: | chr26:17330085-17329897 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 73 |
| Conread position: | 13-345 |
| Cow position: | chr26:33949792-33950126 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 112, 57 |
| Conread position: | 14-336 |
| Cow position: | chr26:18519655-18519339 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 47 |
| Conread position: | 15-255 |
| Cow position: | chr26:30585776-30586017 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 132, 143 |
| Conread position: | 21-251 |
| Cow position: | chr26:32680211-32680443 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 21-274 |
| Cow position: | chr26:7900039-7900284 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 105, 42 |
| Conread position: | 21-331 |
| Cow position: | chr26:19490780-19490472 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 107, 58 |
| Conread position: | 21-336 |
| Cow position: | chr26:35073732-35073421 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 21-337 |
| Cow position: | chr26:13773627-13773303 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 138 |
| Conread position: | 21-338 |
| Cow position: | chr26:21691791-21692093 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 109, 56 |
| Conread position: | 21-370 |
| Cow position: | chr26:35131834-35132180 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 101, 56 |
| Conread position: | 23-183 |
| Cow position: | chr26:8308179-8308338 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 102, 135 |
| Conread position: | 24-205 |
| Cow position: | chr26:12654452-12654270 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 24-207 |
| Cow position: | chr26:9867771-9867955 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 24-301 |
| Cow position: | chr26:11150559-11150289 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 43 |
| Conread position: | 24-333 |
| Cow position: | chr26:10490812-10490500 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 135 |
| Conread position: | 24-333 |
| Cow position: | chr26:32535290-32534970 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 102, 40 |
| Conread position: | 32-329 |
| Cow position: | chr26:10506352-10506055 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 35 |
| Conread position: | 40-260 |
| Cow position: | chr26:20228691-20228476 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 24 |
| Conread position: | 42-329 |
| Cow position: | chr26:26227259-26226968 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 42-338 |
| Cow position: | chr26:19468927-19469223 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 86, 22 |
| Conread position: | 47-337 |
| Cow position: | chr26:19013404-19013113 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 48-337 |
| Cow position: | chr26:19791854-19792136 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 72-292 |
| Cow position: | chr26:15516751-15516974 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 119 |
| Conread position: | 80-328 |
| Cow position: | chr26:5543401-5543653 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 81-333 |
| Cow position: | chr26:30076351-30076103 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 82-243 |
| Cow position: | chr26:22018288-22018451 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 84-224 |
| Cow position: | chr26:2242970-2242829 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 122, 73 |
| Conread position: | 84-356 |
| Cow position: | chr26:16889981-16889709 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 48, 75 |
Show alignments to all cow chromosomes.