Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-181 |
| Cow position: | chr27:8320089-8319914 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 127, 25 |
| Conread position: | 1-204 |
| Cow position: | chr27:30697104-30696903 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 127, 9 |
| Conread position: | 1-251 |
| Cow position: | chr27:25784213-25784462 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 74 |
| Conread position: | 1-305 |
| Cow position: | chr27:23906636-23906325 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-326 |
| Cow position: | chr27:15406170-15405843 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 46 |
| Conread position: | 1-329 |
| Cow position: | chr27:31546999-31547324 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 129, 63 |
| Conread position: | 1-333 |
| Cow position: | chr27:30783463-30783115 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 33, 167 |
| Conread position: | 1-336 |
| Cow position: | chr27:21102843-21102503 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 108, 81 |
| Conread position: | 1-340 |
| Cow position: | chr27:17049899-17050243 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 128, 66 |
| Conread position: | 2-312 |
| Cow position: | chr27:10670585-10670281 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 4-205 |
| Cow position: | chr27:11349586-11349789 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 6-175 |
| Cow position: | chr27:10321608-10321438 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 112 |
| Conread position: | 6-337 |
| Cow position: | chr27:16428203-16427870 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 11-205 |
| Cow position: | chr27:20865901-20865703 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 11-333 |
| Cow position: | chr27:25874159-25873831 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 150 |
| Conread position: | 12-250 |
| Cow position: | chr27:13182750-13182986 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 12-272 |
| Cow position: | chr27:8727132-8726857 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 121 |
| Conread position: | 12-291 |
| Cow position: | chr27:11490160-11489874 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 113, 15 |
| Conread position: | 12-331 |
| Cow position: | chr27:16037427-16037752 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 12-337 |
| Cow position: | chr27:1904073-1904396 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 13-340 |
| Cow position: | chr27:18954581-18954248 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 15-377 |
| Cow position: | chr27:31249768-31249407 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 111, 66 |
| Conread position: | 19-207 |
| Cow position: | chr27:816230-816419 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 106, 140 |
| Conread position: | 21-260 |
| Cow position: | chr27:26343099-26343335 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 21-315 |
| Cow position: | chr27:22586361-22586060 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 21-331 |
| Cow position: | chr27:14999361-14999676 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 60, 147 |
| Conread position: | 28-274 |
| Cow position: | chr27:23794105-23794353 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 58 |
| Conread position: | 42-248 |
| Cow position: | chr27:18189893-18189684 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 82, 126 |
| Conread position: | 73-333 |
| Cow position: | chr27:24115601-24115335 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 11, 88 |
| Conread position: | 75-327 |
| Cow position: | chr27:29374560-29374823 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 77 |
| Conread position: | 86-258 |
| Cow position: | chr27:13881743-13881566 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 88-331 |
| Cow position: | chr27:12164541-12164793 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 99-326 |
| Cow position: | chr27:25739487-25739248 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 105-243 |
| Cow position: | chr27:25734064-25734203 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 124-332 |
| Cow position: | chr27:4873911-4874116 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 125-337 |
| Cow position: | chr27:16110451-16110236 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 83, 38 |
Show alignments to all cow chromosomes.