Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-207
Cow position: chr28:5804860-5804656 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 124, 63

Conread position: 1-207
Cow position: chr28:30961133-30960929 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 124, 24

Conread position: 1-222
Cow position: chr28:27711886-27711663 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 80, 68

Conread position: 1-225
Cow position: chr28:11445156-11445390 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 70, 171

Conread position: 1-246
Cow position: chr28:4136940-4137189 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 124, 99

Conread position: 1-251
Cow position: chr28:7314316-7314559 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 127, 49

Conread position: 1-267
Cow position: chr28:34841069-34840807 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 80, 66

Conread position: 1-329
Cow position: chr28:9917737-9918076 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 239
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 124, 63

Conread position: 1-331
Cow position: chr28:21618100-21617768 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 156

Conread position: 1-337
Cow position: chr28:23393157-23393478 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 242
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 123, 9

Conread position: 1-337
Cow position: chr28:32635303-32635642 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 65

Conread position: 1-338
Cow position: chr28:20361800-20361474 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 235
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 127, 10

Conread position: 2-250
Cow position: chr28:11501630-11501878 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 139, 73

Conread position: 2-327
Cow position: chr28:23467504-23467180 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 35, 17

Conread position: 2-333
Cow position: chr28:22486063-22485729 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 46, 29

Conread position: 2-333
Cow position: chr28:27239763-27240091 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 228
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 87, 34

Conread position: 2-336
Cow position: chr28:22499043-22498701 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 244
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 123, 70

Conread position: 3-189
Cow position: chr28:26937734-26937543 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 82, 160

Conread position: 3-251
Cow position: chr28:10295385-10295143 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 123, 62

Conread position: 3-255
Cow position: chr28:4214486-4214230 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 168
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 83, 175

Conread position: 3-255
Cow position: chr28:6319555-6319807 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 157

Conread position: 3-264
Cow position: chr28:22439237-22438978 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 184
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 108, 7

Conread position: 3-316
Cow position: chr28:34563648-34563972 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 221
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 126, 35

Conread position: 3-326
Cow position: chr28:27777110-27777422 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 242
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 10, 37

Conread position: 3-335
Cow position: chr28:32764801-32764475 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 90

Conread position: 3-337
Cow position: chr28:27029738-27030074 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 242
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 129, 14

Conread position: 4-333
Cow position: chr28:17190230-17189917 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 219
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 121, 34

Conread position: 4-338
Cow position: chr28:34082676-34083020 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 223
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 81, 60

Conread position: 6-333
Cow position: chr28:22201537-22201212 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 226
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 35, 67

Conread position: 7-333
Cow position: chr28:32361893-32361547 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 232
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 120

Conread position: 11-296
Cow position: chr28:29785844-29786132 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 193
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 114, 16

Conread position: 11-332
Cow position: chr28:22277242-22277562 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 229
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 31, 66

Conread position: 12-201
Cow position: chr28:979543-979737 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 150

Conread position: 12-205
Cow position: chr28:25070431-25070239 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 113, 54

Conread position: 12-250
Cow position: chr28:13865136-13864894 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 114, 33

Conread position: 12-273
Cow position: chr28:13881130-13880859 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 184
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 59, 153

Conread position: 12-321
Cow position: chr28:1552961-1553271 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 206
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 52

Conread position: 12-323
Cow position: chr28:22090935-22091256 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 10, 93

Conread position: 12-329
Cow position: chr28:17744752-17745074 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 214
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 67, 107

Conread position: 12-333
Cow position: chr28:20310522-20310193 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 67, 55

Conread position: 12-336
Cow position: chr28:34009381-34009053 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 149, 132

Conread position: 12-338
Cow position: chr28:10642958-10643273 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 219
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 111, 55

Conread position: 13-322
Cow position: chr28:9420019-9420329 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 112, 54

Conread position: 13-336
Cow position: chr28:32277142-32276819 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 68

Conread position: 13-337
Cow position: chr28:11050904-11050586 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 112, 51

Conread position: 14-188
Cow position: chr28:34551543-34551720 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 24

Conread position: 14-225
Cow position: chr28:1288899-1289100 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 49

Conread position: 14-337
Cow position: chr28:20629500-20629836 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 223
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 154

Conread position: 14-344
Cow position: chr28:4155868-4155546 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 142, 67

Conread position: 15-187
Cow position: chr28:10575442-10575610 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 52

Conread position: 15-256
Cow position: chr28:11787376-11787616 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 117, 108

Conread position: 15-331
Cow position: chr28:3646008-3645696 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 58, 49

Conread position: 17-250
Cow position: chr28:13725511-13725277 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 183, 62

Conread position: 21-292
Cow position: chr28:21855619-21855910 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 145

Conread position: 21-336
Cow position: chr28:21381775-21381454 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 211
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 189, 94

Conread position: 22-238
Cow position: chr28:1655960-1655750 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 104, 45

Conread position: 23-155
Cow position: chr28:31176459-31176326 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 62, 46

Conread position: 23-207
Cow position: chr28:24645035-24644850 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 41

Conread position: 23-317
Cow position: chr28:12226944-12227239 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 198
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 41

Conread position: 23-333
Cow position: chr28:916717-917028 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 202
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 102, 133

Conread position: 24-331
Cow position: chr28:22233920-22234222 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 173, 74

Conread position: 26-346
Cow position: chr28:12224430-12224751 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 221
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 56, 135

Conread position: 30-337
Cow position: chr28:33881370-33881057 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 47, 34

Conread position: 47-331
Cow position: chr28:32823136-32823414 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 81, 33

Conread position: 47-337
Cow position: chr28:22843068-22842772 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 200
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 42, 20

Conread position: 48-332
Cow position: chr28:4457876-4457590 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 196
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 78, 32

Conread position: 50-263
Cow position: chr28:24318484-24318694 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 75, 109

Conread position: 51-313
Cow position: chr28:32817443-32817183 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 74, 90

Conread position: 51-323
Cow position: chr28:2265359-2265642 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 35, 16

Conread position: 57-338
Cow position: chr28:22668152-22667880 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 71, 7

Conread position: 71-336
Cow position: chr28:8788853-8788605 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 56, 86

Conread position: 72-337
Cow position: chr28:26984410-26984678 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 62, 87

Conread position: 76-330
Cow position: chr28:17249060-17249326 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 19, 98

Conread position: 80-333
Cow position: chr28:25913295-25913547 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 48, 21

Conread position: 82-338
Cow position: chr28:20774351-20774616 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 74

Conread position: 82-338
Cow position: chr28:24564308-24564570 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 43, 86

Conread position: 83-337
Cow position: chr28:28635619-28635359 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 173
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 42, 77

Conread position: 85-311
Cow position: chr28:19374045-19374272 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 31

Conread position: 90-333
Cow position: chr28:24620356-24620606 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 70

Conread position: 101-337
Cow position: chr28:12701143-12700897 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 61

Conread position: 113-334
Cow position: chr28:3598964-3599190 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 99, 22

Conread position: 122-337
Cow position: chr28:23916557-23916330 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 44

Conread position: 158-327
Cow position: chr28:33431664-33431492 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 22

Conread position: 206-370
Cow position: chr28:20184436-20184604 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 338-800
Cow position: chr28:5800747-5801185 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 77

Conread position: 544-804
Cow position: chr28:10230280-10230017 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 196
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 10, 54

Conread position: 545-798
Cow position: chr28:29436919-29436672 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 35, 20

Show alignments to all cow chromosomes.