Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-155
Cow position: chr29:18528373-18528526 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 71, 63

Conread position: 1-251
Cow position: chr29:4480826-4481076 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 169
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 124, 63

Conread position: 1-286
Cow position: chr29:30517508-30517799 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 124, 57

Conread position: 1-289
Cow position: chr29:20642047-20641760 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 126, 40

Conread position: 1-328
Cow position: chr29:39553231-39553567 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 34, 69

Conread position: 1-331
Cow position: chr29:22634460-22634123 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 222
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 82, 11

Conread position: 1-332
Cow position: chr29:1004437-1004106 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 82, 50

Conread position: 1-333
Cow position: chr29:11786572-11786231 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 224
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 84, 71

Conread position: 1-333
Cow position: chr29:30432627-30432964 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 212
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 142, 158

Conread position: 1-336
Cow position: chr29:22269146-22268818 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 127, 62

Conread position: 1-337
Cow position: chr29:18399821-18399493 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 227
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 194, 66

Conread position: 1-337
Cow position: chr29:19565334-19565674 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 239
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 32, 178

Conread position: 1-337
Cow position: chr29:34120947-34121283 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 64

Conread position: 1-338
Cow position: chr29:36409636-36409318 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 44, 0

Conread position: 1-340
Cow position: chr29:30357723-30358065 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 225
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 128, 57

Conread position: 1-355
Cow position: chr29:4490061-4489709 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 245
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 108, 35

Conread position: 2-219
Cow position: chr29:34390565-34390777 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 123, 30

Conread position: 2-331
Cow position: chr29:20466918-20466604 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 242, 68

Conread position: 2-337
Cow position: chr29:6199717-6200039 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 125, 24

Conread position: 3-210
Cow position: chr29:23385197-23384996 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 99, 43

Conread position: 3-249
Cow position: chr29:32807925-32807677 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 83, 61

Conread position: 3-255
Cow position: chr29:32942211-32941956 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 98, 44

Conread position: 3-306
Cow position: chr29:34332850-34333156 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 161, 29

Conread position: 3-326
Cow position: chr29:33009113-33008793 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 67, 157

Conread position: 3-326
Cow position: chr29:45523077-45523406 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 77, 49

Conread position: 3-336
Cow position: chr29:31748239-31748578 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 229
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 81, 159

Conread position: 3-338
Cow position: chr29:7330890-7331237 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 244
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 122, 155

Conread position: 5-206
Cow position: chr29:26216493-26216303 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 12-251
Cow position: chr29:22285625-22285391 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 114, 55

Conread position: 12-327
Cow position: chr29:36614787-36615105 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 114, 52

Conread position: 12-328
Cow position: chr29:5635878-5635571 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 114, 31

Conread position: 12-328
Cow position: chr29:40610066-40610377 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 113, 55

Conread position: 12-333
Cow position: chr29:33559459-33559793 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 227
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 129, 110

Conread position: 12-335
Cow position: chr29:36323582-36323251 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 66

Conread position: 12-337
Cow position: chr29:137917-137582 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 219
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 110, 148

Conread position: 13-286
Cow position: chr29:22949351-22949626 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 191
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 55

Conread position: 13-306
Cow position: chr29:43405018-43405303 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 195
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 113, 67

Conread position: 14-260
Cow position: chr29:20615241-20614994 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 72, 44

Conread position: 14-298
Cow position: chr29:35261422-35261148 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 111, 45

Conread position: 15-207
Cow position: chr29:41183627-41183820 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 110, 144

Conread position: 15-250
Cow position: chr29:799115-799348 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 110, 23

Conread position: 15-291
Cow position: chr29:19761612-19761330 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 110, 143

Conread position: 15-346
Cow position: chr29:3106842-3106522 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 220
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 113, 50

Conread position: 21-192
Cow position: chr29:22935595-22935423 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 104, 138

Conread position: 21-233
Cow position: chr29:38247438-38247652 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 89

Conread position: 21-261
Cow position: chr29:37451628-37451378 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 71, 34

Conread position: 21-331
Cow position: chr29:43626079-43626382 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 106, 57

Conread position: 21-337
Cow position: chr29:23907564-23907257 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 216
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 52, 113

Conread position: 22-274
Cow position: chr29:8512023-8511777 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 89

Conread position: 22-328
Cow position: chr29:40463437-40463135 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 103, 42

Conread position: 24-317
Cow position: chr29:38485312-38485021 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 101, 23

Conread position: 24-337
Cow position: chr29:4082957-4083281 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 100, 148

Conread position: 24-338
Cow position: chr29:39326200-39325896 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 216
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 42

Conread position: 26-338
Cow position: chr29:36405362-36405054 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 214
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 102, 23

Conread position: 37-207
Cow position: chr29:13077236-13077058 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 129

Conread position: 43-295
Cow position: chr29:7748184-7748430 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 27, 21

Conread position: 69-327
Cow position: chr29:6536885-6536624 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 16, 74

Conread position: 76-337
Cow position: chr29:5799603-5799341 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 13, 51

Conread position: 76-338
Cow position: chr29:17342301-17342567 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 84

Conread position: 80-337
Cow position: chr29:9512441-9512700 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 182
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 48, 102

Conread position: 83-333
Cow position: chr29:30106360-30106617 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 43, 15

Conread position: 110-334
Cow position: chr29:39371836-39371614 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 15, 58

Conread position: 124-337
Cow position: chr29:36594433-36594642 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 43

Conread position: 341-799
Cow position: chr29:16017056-16016592 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 56

Show alignments to all cow chromosomes.