Cow genome map
| Conread name: | Ss1.1-Thy1-THY010080G11.5 |
| Conread position: | 1-155 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 1-251 |
| Cow position: | |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 63 |
| Conread position: | 1-286 |
| Cow position: | |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 124, 57 |
| Conread position: | 1-289 |
| Cow position: | |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 1-328 |
| Cow position: | |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 69 |
| Conread position: | 1-331 |
| Cow position: | |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 1-332 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 82, 50 |
| Conread position: | 1-333 |
| Cow position: | |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 84, 71 |
| Conread position: | 1-333 |
| Cow position: | |
| Alignm length: | 340 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 158 |
| Conread position: | 1-336 |
| Cow position: | |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 127, 62 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 194, 66 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 32, 178 |
| Conread position: | 1-337 |
| Cow position: | |
| Alignm length: | 343 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 64 |
| Conread position: | 1-338 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-340 |
| Cow position: | |
| Alignm length: | 351 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 128, 57 |
| Conread position: | 1-355 |
| Cow position: | |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 108, 35 |
| Conread position: | 2-219 |
| Cow position: | |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 123, 30 |
| Conread position: | 2-331 |
| Cow position: | |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 242, 68 |
| Conread position: | 2-337 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 3-210 |
| Cow position: | |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 3-249 |
| Cow position: | |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 3-255 |
| Cow position: | |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 3-306 |
| Cow position: | |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 161, 29 |
| Conread position: | 3-326 |
| Cow position: | |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 157 |
| Conread position: | 3-326 |
| Cow position: | |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 77, 49 |
| Conread position: | 3-336 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 81, 159 |
| Conread position: | 3-338 |
| Cow position: | |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 122, 155 |
| Conread position: | 5-206 |
| Cow position: | |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 12-251 |
| Cow position: | |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 114, 55 |
| Conread position: | 12-327 |
| Cow position: | |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 114, 52 |
| Conread position: | 12-328 |
| Cow position: | |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 114, 31 |
| Conread position: | 12-328 |
| Cow position: | |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 113, 55 |
| Conread position: | 12-333 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 129, 110 |
| Conread position: | 12-335 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 12-337 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 148 |
| Conread position: | 13-286 |
| Cow position: | |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 13-306 |
| Cow position: | |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 113, 67 |
| Conread position: | 14-260 |
| Cow position: | |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 14-298 |
| Cow position: | |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 45 |
| Conread position: | 15-207 |
| Cow position: | |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 144 |
| Conread position: | 15-250 |
| Cow position: | |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 110, 23 |
| Conread position: | 15-291 |
| Cow position: | |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 110, 143 |
| Conread position: | 15-346 |
| Cow position: | |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 113, 50 |
| Conread position: | 21-192 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 104, 138 |
| Conread position: | 21-233 |
| Cow position: | |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 89 |
| Conread position: | 21-261 |
| Cow position: | |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 21-331 |
| Cow position: | |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 106, 57 |
| Conread position: | 21-337 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 52, 113 |
| Conread position: | 22-274 |
| Cow position: | |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 89 |
| Conread position: | 22-328 |
| Cow position: | |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 103, 42 |
| Conread position: | 24-317 |
| Cow position: | |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 23 |
| Conread position: | 24-337 |
| Cow position: | |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 100, 148 |
| Conread position: | 24-338 |
| Cow position: | |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 26-338 |
| Cow position: | |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 37-207 |
| Cow position: | |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 29, 129 |
| Conread position: | 43-295 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 27, 21 |
| Conread position: | 69-327 |
| Cow position: | |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 76-337 |
| Cow position: | |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 76-338 |
| Cow position: | |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 80-337 |
| Cow position: | |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 83-333 |
| Cow position: | |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 110-334 |
| Cow position: | |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 58 |
| Conread position: | 124-337 |
| Cow position: | |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 341-799 |
| Cow position: | |
| Alignm length: | 486 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 56 |
Show alignments to all cow chromosomes.