Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-183
Cow position:
Alignm length: 185
Alignm identity: 131
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 125, 78

Conread position: 1-187
Cow position:
Alignm length: 191
Alignm identity: 144
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 85, 140

Conread position: 1-192
Cow position:
Alignm length: 192
Alignm identity: 134
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 74, 0

Conread position: 1-206
Cow position:
Alignm length: 211
Alignm identity: 147
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 83, 63

Conread position: 1-207
Cow position:
Alignm length: 209
Alignm identity: 148
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 124, 63

Conread position: 1-219
Cow position:
Alignm length: 221
Alignm identity: 161
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 125, 58

Conread position: 1-220
Cow position:
Alignm length: 224
Alignm identity: 157
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 67, 26

Conread position: 1-233
Cow position:
Alignm length: 238
Alignm identity: 163
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 125, 63

Conread position: 1-255
Cow position:
Alignm length: 260
Alignm identity: 169
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 124, 158

Conread position: 1-263
Cow position:
Alignm length: 274
Alignm identity: 192
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 127, 58

Conread position: 1-274
Cow position:
Alignm length: 280
Alignm identity: 186
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 81, 66

Conread position: 1-295
Cow position:
Alignm length: 311
Alignm identity: 214
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 106, 66

Conread position: 1-300
Cow position:
Alignm length: 305
Alignm identity: 205
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 127, 25

Conread position: 1-315
Cow position:
Alignm length: 328
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 63

Conread position: 1-319
Cow position:
Alignm length: 323
Alignm identity: 205
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 211, 63

Conread position: 1-331
Cow position:
Alignm length: 337
Alignm identity: 218
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 5, 51

Conread position: 1-335
Cow position:
Alignm length: 337
Alignm identity: 231
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 125, 18

Conread position: 1-336
Cow position:
Alignm length: 347
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 26

Conread position: 1-336
Cow position:
Alignm length: 341
Alignm identity: 224
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 125, 78

Conread position: 1-337
Cow position:
Alignm length: 344
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 159

Conread position: 1-337
Cow position:
Alignm length: 346
Alignm identity: 227
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 128, 21

Conread position: 1-337
Cow position:
Alignm length: 349
Alignm identity: 224
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 81, 50

Conread position: 1-337
Cow position:
Alignm length: 356
Alignm identity: 244
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 125, 63

Conread position: 1-337
Cow position:
Alignm length: 343
Alignm identity: 243
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 71, 63

Conread position: 1-337
Cow position:
Alignm length: 348
Alignm identity: 238
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 120, 25

Conread position: 1-338
Cow position:
Alignm length: 345
Alignm identity: 227
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 84, 101

Conread position: 1-343
Cow position:
Alignm length: 356
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 33, 171

Conread position: 2-168
Cow position:
Alignm length: 169
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 123, 62

Conread position: 2-207
Cow position:
Alignm length: 210
Alignm identity: 145
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 77, 159

Conread position: 2-291
Cow position:
Alignm length: 298
Alignm identity: 202
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 83, 159

Conread position: 2-328
Cow position:
Alignm length: 338
Alignm identity: 235
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 11, 72

Conread position: 2-370
Cow position:
Alignm length: 384
Alignm identity: 243
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 46

Conread position: 3-204
Cow position:
Alignm length: 205
Alignm identity: 145
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 125, 61

Conread position: 3-250
Cow position:
Alignm length: 251
Alignm identity: 172
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 207, 64

Conread position: 3-337
Cow position:
Alignm length: 345
Alignm identity: 216
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 125, 72

Conread position: 3-345
Cow position:
Alignm length: 354
Alignm identity: 229
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 51, 44

Conread position: 3-359
Cow position:
Alignm length: 365
Alignm identity: 248
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 123, 61

Conread position: 5-255
Cow position:
Alignm length: 257
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 82, 155

Conread position: 6-207
Cow position:
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 119, 38

Conread position: 6-333
Cow position:
Alignm length: 342
Alignm identity: 238
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 42, 156

Conread position: 6-333
Cow position:
Alignm length: 340
Alignm identity: 224
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 66, 53

Conread position: 6-337
Cow position:
Alignm length: 342
Alignm identity: 241
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 72, 52

Conread position: 7-317
Cow position:
Alignm length: 323
Alignm identity: 226
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 15, 153

Conread position: 7-333
Cow position:
Alignm length: 337
Alignm identity: 221
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 122, 59

Conread position: 10-337
Cow position:
Alignm length: 332
Alignm identity: 227
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 118, 16

Conread position: 11-243
Cow position:
Alignm length: 237
Alignm identity: 164
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 61, 97

Conread position: 11-255
Cow position:
Alignm length: 255
Alignm identity: 182
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 114, 16

Conread position: 11-315
Cow position:
Alignm length: 316
Alignm identity: 215
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 117, 68

Conread position: 11-338
Cow position:
Alignm length: 339
Alignm identity: 232
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 117, 15

Conread position: 12-204
Cow position:
Alignm length: 195
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 55

Conread position: 12-207
Cow position:
Alignm length: 198
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 113, 52

Conread position: 12-207
Cow position:
Alignm length: 198
Alignm identity: 139
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 113, 148

Conread position: 12-207
Cow position:
Alignm length: 199
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 113, 147

Conread position: 12-226
Cow position:
Alignm length: 221
Alignm identity: 160
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 74, 52

Conread position: 12-249
Cow position:
Alignm length: 241
Alignm identity: 171
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 47, 15

Conread position: 12-251
Cow position:
Alignm length: 244
Alignm identity: 171
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 31, 63

Conread position: 12-255
Cow position:
Alignm length: 247
Alignm identity: 168
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 194, 52

Conread position: 12-255
Cow position:
Alignm length: 250
Alignm identity: 170
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 74, 156

Conread position: 12-255
Cow position:
Alignm length: 250
Alignm identity: 168
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 52

Conread position: 12-255
Cow position:
Alignm length: 249
Alignm identity: 167
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 53

Conread position: 12-306
Cow position:
Alignm length: 301
Alignm identity: 207
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 93, 52

Conread position: 12-318
Cow position:
Alignm length: 317
Alignm identity: 218
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 114, 33

Conread position: 12-320
Cow position:
Alignm length: 318
Alignm identity: 209
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 113, 26

Conread position: 12-322
Cow position:
Alignm length: 320
Alignm identity: 220
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 129, 32

Conread position: 12-333
Cow position:
Alignm length: 332
Alignm identity: 218
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 116, 55

Conread position: 12-333
Cow position:
Alignm length: 328
Alignm identity: 210
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 113, 52

Conread position: 12-333
Cow position:
Alignm length: 328
Alignm identity: 209
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 63, 148

Conread position: 12-337
Cow position:
Alignm length: 336
Alignm identity: 213
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 54

Conread position: 12-337
Cow position:
Alignm length: 335
Alignm identity: 212
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 114, 68

Conread position: 12-337
Cow position:
Alignm length: 343
Alignm identity: 232
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 137

Conread position: 12-337
Cow position:
Alignm length: 335
Alignm identity: 227
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 92, 28

Conread position: 12-337
Cow position:
Alignm length: 336
Alignm identity: 214
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 52

Conread position: 13-337
Cow position:
Alignm length: 332
Alignm identity: 211
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 113, 51

Conread position: 14-201
Cow position:
Alignm length: 201
Alignm identity: 144
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 67, 46

Conread position: 15-207
Cow position:
Alignm length: 196
Alignm identity: 136
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 68, 49

Conread position: 15-260
Cow position:
Alignm length: 256
Alignm identity: 174
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 148

Conread position: 15-332
Cow position:
Alignm length: 328
Alignm identity: 209
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 115, 33

Conread position: 15-333
Cow position:
Alignm length: 330
Alignm identity: 221
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 18, 53

Conread position: 16-331
Cow position:
Alignm length: 322
Alignm identity: 211
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 109, 24

Conread position: 16-331
Cow position:
Alignm length: 336
Alignm identity: 227
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 11

Conread position: 17-228
Cow position:
Alignm length: 215
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 71, 8

Conread position: 19-207
Cow position:
Alignm length: 193
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 45

Conread position: 19-291
Cow position:
Alignm length: 280
Alignm identity: 188
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 188, 26

Conread position: 21-330
Cow position:
Alignm length: 318
Alignm identity: 203
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 185, 58

Conread position: 21-335
Cow position:
Alignm length: 320
Alignm identity: 204
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 104, 43

Conread position: 21-344
Cow position:
Alignm length: 334
Alignm identity: 227
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 15

Conread position: 23-337
Cow position:
Alignm length: 321
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 24-333
Cow position:
Alignm length: 331
Alignm identity: 226
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 40, 147

Conread position: 27-255
Cow position:
Alignm length: 237
Alignm identity: 162
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 134

Conread position: 27-306
Cow position:
Alignm length: 300
Alignm identity: 219
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 54, 140

Conread position: 37-295
Cow position:
Alignm length: 270
Alignm identity: 186
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 54, 14

Conread position: 43-233
Cow position:
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 83, 37

Conread position: 49-337
Cow position:
Alignm length: 297
Alignm identity: 211
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 21, 15

Conread position: 50-304
Cow position:
Alignm length: 272
Alignm identity: 196
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 58, 14

Conread position: 75-293
Cow position:
Alignm length: 225
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 192

Conread position: 75-338
Cow position:
Alignm length: 273
Alignm identity: 183
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 50, 84

Conread position: 76-337
Cow position:
Alignm length: 275
Alignm identity: 185
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 20

Conread position: 76-345
Cow position:
Alignm length: 279
Alignm identity: 184
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 83

Conread position: 77-298
Cow position:
Alignm length: 225
Alignm identity: 169
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 134, 49

Conread position: 77-333
Cow position:
Alignm length: 265
Alignm identity: 187
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 51, 36

Conread position: 81-328
Cow position:
Alignm length: 258
Alignm identity: 175
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 49, 78

Conread position: 81-328
Cow position:
Alignm length: 258
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 241

Conread position: 81-333
Cow position:
Alignm length: 264
Alignm identity: 180
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 78

Conread position: 82-251
Cow position:
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 77

Conread position: 98-337
Cow position:
Alignm length: 244
Alignm identity: 169
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 31, 58

Conread position: 98-370
Cow position:
Alignm length: 276
Alignm identity: 192
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 32, 5

Conread position: 103-331
Cow position:
Alignm length: 237
Alignm identity: 162
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 25, 65

Conread position: 104-333
Cow position:
Alignm length: 250
Alignm identity: 174
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 21, 56

Conread position: 125-315
Cow position:
Alignm length: 199
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 32

Conread position: 140-332
Cow position:
Alignm length: 197
Alignm identity: 137
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 68, 17

Conread position: 333-696
Cow position:
Alignm length: 376
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 62

Conread position: 335-570
Cow position:
Alignm length: 243
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 28, 75

Conread position: 339-597
Cow position:
Alignm length: 273
Alignm identity: 197
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 76

Conread position: 353-798
Cow position:
Alignm length: 463
Alignm identity: 313
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 21, 63

Conread position: 362-719
Cow position:
Alignm length: 368
Alignm identity: 254
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 61, 50

Conread position: 401-799
Cow position:
Alignm length: 407
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 11

Show alignments to all cow chromosomes.