Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-182
Cow position: chr9:23043825-23044006 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 125, 74

Conread position: 1-205
Cow position: chr9:33999687-33999482 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 73, 21

Conread position: 1-206
Cow position: chr9:13527778-13527987 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 156
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 69, 159

Conread position: 1-207
Cow position: chr9:11156211-11156417 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 63

Conread position: 1-207
Cow position: chr9:20988748-20988543 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 124, 63

Conread position: 1-207
Cow position: chr9:38346703-38346905 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 79, 0

Conread position: 1-222
Cow position: chr9:1516830-1516610 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 124, 20

Conread position: 1-249
Cow position: chr9:8727792-8727548 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 124, 63

Conread position: 1-255
Cow position: chr9:9634113-9633856 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 36, 81

Conread position: 1-260
Cow position: chr9:49151174-49151432 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 124, 80

Conread position: 1-267
Cow position: chr9:62630468-62630210 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 125, 40

Conread position: 1-273
Cow position: chr9:41918449-41918719 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 78, 101

Conread position: 1-292
Cow position: chr9:32738781-32738486 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 69, 65

Conread position: 1-311
Cow position: chr9:6373184-6373498 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 216
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 72, 63

Conread position: 1-316
Cow position: chr9:27690035-27690341 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 138, 35

Conread position: 1-320
Cow position: chr9:21742017-21742344 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 224
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 94, 44

Conread position: 1-326
Cow position: chr9:9247347-9247027 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 220
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 124, 73

Conread position: 1-331
Cow position: chr9:11439251-11439584 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 229
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 126, 62

Conread position: 1-332
Cow position: chr9:49683486-49683825 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 232
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 9

Conread position: 1-333
Cow position: chr9:28702905-28702565 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 234
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 72, 63

Conread position: 1-337
Cow position: chr9:23603579-23603242 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 230
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 8

Conread position: 1-337
Cow position: chr9:23836858-23836522 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 163

Conread position: 1-337
Cow position: chr9:51314775-51315092 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 226
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 211, 67

Conread position: 1-337
Cow position: chr9:62535953-62535616 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 235
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 123, 66

Conread position: 2-284
Cow position: chr9:5575802-5575512 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 77, 119

Conread position: 2-292
Cow position: chr9:9558673-9558970 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 196
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 79, 158

Conread position: 2-329
Cow position: chr9:27004926-27004595 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 222
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 81, 62

Conread position: 2-333
Cow position: chr9:13117147-13117466 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 123, 84

Conread position: 2-333
Cow position: chr9:34675959-34676283 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 225
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 28, 158

Conread position: 2-333
Cow position: chr9:49201727-49202054 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 237
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 151, 85

Conread position: 3-187
Cow position: chr9:7619334-7619150 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 13, 65

Conread position: 3-261
Cow position: chr9:50689353-50689091 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 184
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 157

Conread position: 3-314
Cow position: chr9:17068239-17068540 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 221
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 78, 23

Conread position: 3-331
Cow position: chr9:23297463-23297791 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 123, 61

Conread position: 3-331
Cow position: chr9:43643189-43643518 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 221
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 93, 108

Conread position: 3-337
Cow position: chr9:56562209-56561862 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 245
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 69, 35

Conread position: 3-369
Cow position: chr9:34945569-34945937 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 242
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 123, 72

Conread position: 4-304
Cow position: chr9:1613951-1613644 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 202
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 78

Conread position: 6-195
Cow position: chr9:49753905-49754094 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 119, 38

Conread position: 6-255
Cow position: chr9:16981619-16981871 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 82, 61

Conread position: 11-187
Cow position: chr9:2027349-2027535 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 157

Conread position: 11-230
Cow position: chr9:4912460-4912683 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 117, 147

Conread position: 11-338
Cow position: chr9:57301143-57301472 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 18

Conread position: 12-206
Cow position: chr9:7844245-7844440 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 75, 52

Conread position: 12-207
Cow position: chr9:3411455-3411647 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 55

Conread position: 12-207
Cow position: chr9:58133152-58133355 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 163

Conread position: 12-228
Cow position: chr9:35592694-35592917 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 156

Conread position: 12-256
Cow position: chr9:32141668-32141422 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 55, 146

Conread position: 12-272
Cow position: chr9:29373071-29372817 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 118, 55

Conread position: 12-318
Cow position: chr9:60460072-60460389 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 212
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 39, 156

Conread position: 12-330
Cow position: chr9:11337798-11338115 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 52

Conread position: 12-333
Cow position: chr9:4284665-4284338 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 219
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 73, 26

Conread position: 12-333
Cow position: chr9:6705082-6705409 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 62, 161

Conread position: 12-337
Cow position: chr9:19536597-19536927 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 221
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 67, 10

Conread position: 12-337
Cow position: chr9:32985813-32985489 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 118, 156

Conread position: 13-334
Cow position: chr9:19079306-19078979 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 226
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 24, 55

Conread position: 15-207
Cow position: chr9:56528658-56528465 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 111, 144

Conread position: 15-251
Cow position: chr9:49034382-49034152 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 109, 49

Conread position: 15-333
Cow position: chr9:40131345-40131013 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 219
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 113, 144

Conread position: 17-328
Cow position: chr9:32625413-32625723 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 206
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 64

Conread position: 19-333
Cow position: chr9:33845458-33845133 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 223
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 11, 132

Conread position: 21-260
Cow position: chr9:22378392-22378643 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 43, 144

Conread position: 21-333
Cow position: chr9:30439824-30439511 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 103, 45

Conread position: 21-338
Cow position: chr9:3932675-3933002 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 223
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 53, 43

Conread position: 23-205
Cow position: chr9:10004446-10004629 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 138

Conread position: 23-331
Cow position: chr9:47263469-47263156 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 211
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 103, 24

Conread position: 24-346
Cow position: chr9:43193848-43193533 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 216
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 221, 104

Conread position: 27-155
Cow position: chr9:19592791-19592661 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 27-307
Cow position: chr9:43538216-43538504 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 43, 54

Conread position: 29-337
Cow position: chr9:20684468-20684165 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 26, 51

Conread position: 36-207
Cow position: chr9:4647222-4647395 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 70

Conread position: 36-327
Cow position: chr9:45943135-45943427 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 212
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 89, 28

Conread position: 37-337
Cow position: chr9:31411317-31411621 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 204
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 87, 116

Conread position: 41-337
Cow position: chr9:9459234-9459538 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 87, 34

Conread position: 45-331
Cow position: chr9:24213985-24213690 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 204
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 22

Conread position: 74-344
Cow position: chr9:13971595-13971325 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 52, 14

Conread position: 76-333
Cow position: chr9:49619289-49619025 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 7, 81

Conread position: 77-333
Cow position: chr9:27450477-27450739 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 174
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 51, 82

Conread position: 81-339
Cow position: chr9:35023329-35023074 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 44, 79

Conread position: 81-345
Cow position: chr9:50727845-50728114 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 78

Conread position: 84-236
Cow position: chr9:34132550-34132703 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 41, 75

Conread position: 105-335
Cow position: chr9:20506451-20506219 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 23, 63

Conread position: 114-273
Cow position: chr9:55891068-55890901 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 12, 54

Conread position: 120-339
Cow position: chr9:39032702-39032477 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 16

Conread position: 337-566
Cow position: chr9:59510771-59511006 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 25, 9

Conread position: 338-799
Cow position: chr9:3726255-3726731 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 76

Conread position: 341-799
Cow position: chr9:3394002-3393557 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 5

Conread position: 356-796
Cow position: chr9:64159118-64159572 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 52

Conread position: 364-800
Cow position: chr9:29328294-29328712 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 27

Conread position: 612-800
Cow position: chr9:59511237-59511433 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 78, 139

Show alignments to all cow chromosomes.