Cow genome map

Conread name: Ss1.1-Thy1-THY010080G11.5

Conread position: 1-167
Cow position:
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 82, 160

Conread position: 1-192
Cow position:
Alignm length: 194
Alignm identity: 142
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 125, 64

Conread position: 1-201
Cow position:
Alignm length: 203
Alignm identity: 148
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 124, 66

Conread position: 1-206
Cow position:
Alignm length: 208
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 124, 85

Conread position: 1-206
Cow position:
Alignm length: 208
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 125, 65

Conread position: 1-207
Cow position:
Alignm length: 209
Alignm identity: 151
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 124, 74

Conread position: 1-207
Cow position:
Alignm length: 210
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 88, 63

Conread position: 1-208
Cow position:
Alignm length: 210
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 123, 63

Conread position: 1-217
Cow position:
Alignm length: 220
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 123, 59

Conread position: 1-232
Cow position:
Alignm length: 237
Alignm identity: 160
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 127, 158

Conread position: 1-251
Cow position:
Alignm length: 258
Alignm identity: 172
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 78, 159

Conread position: 1-255
Cow position:
Alignm length: 260
Alignm identity: 175
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 125, 78

Conread position: 1-255
Cow position:
Alignm length: 260
Alignm identity: 174
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 125, 66

Conread position: 1-259
Cow position:
Alignm length: 262
Alignm identity: 171
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 208, 65

Conread position: 1-268
Cow position:
Alignm length: 273
Alignm identity: 182
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 122, 63

Conread position: 1-275
Cow position:
Alignm length: 283
Alignm identity: 191
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 198, 50

Conread position: 1-290
Cow position:
Alignm length: 305
Alignm identity: 216
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 12, 8

Conread position: 1-291
Cow position:
Alignm length: 300
Alignm identity: 205
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 73, 25

Conread position: 1-294
Cow position:
Alignm length: 306
Alignm identity: 210
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 76, 161

Conread position: 1-295
Cow position:
Alignm length: 306
Alignm identity: 203
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 68

Conread position: 1-297
Cow position:
Alignm length: 303
Alignm identity: 199
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 167, 66

Conread position: 1-312
Cow position:
Alignm length: 320
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 65

Conread position: 1-315
Cow position:
Alignm length: 321
Alignm identity: 224
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 111, 78

Conread position: 1-317
Cow position:
Alignm length: 325
Alignm identity: 222
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 124, 138

Conread position: 1-331
Cow position:
Alignm length: 347
Alignm identity: 236
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 72, 172

Conread position: 1-333
Cow position:
Alignm length: 343
Alignm identity: 223
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 124, 66

Conread position: 1-333
Cow position:
Alignm length: 342
Alignm identity: 213
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 124, 159

Conread position: 1-333
Cow position:
Alignm length: 342
Alignm identity: 241
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 125, 21

Conread position: 1-333
Cow position:
Alignm length: 341
Alignm identity: 218
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 82, 169

Conread position: 1-333
Cow position:
Alignm length: 335
Alignm identity: 209
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 124, 63

Conread position: 1-336
Cow position:
Alignm length: 343
Alignm identity: 230
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 127, 102

Conread position: 1-337
Cow position:
Alignm length: 349
Alignm identity: 240
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 127, 26

Conread position: 1-338
Cow position:
Alignm length: 346
Alignm identity: 229
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 132, 68

Conread position: 1-338
Cow position:
Alignm length: 344
Alignm identity: 233
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 124, 63

Conread position: 1-370
Cow position:
Alignm length: 373
Alignm identity: 247
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 127, 62

Conread position: 1-370
Cow position:
Alignm length: 376
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 63

Conread position: 2-240
Cow position:
Alignm length: 244
Alignm identity: 170
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 79, 24

Conread position: 2-327
Cow position:
Alignm length: 337
Alignm identity: 223
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 101

Conread position: 2-330
Cow position:
Alignm length: 339
Alignm identity: 227
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 123, 78

Conread position: 2-337
Cow position:
Alignm length: 344
Alignm identity: 226
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 84, 160

Conread position: 3-187
Cow position:
Alignm length: 188
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 125, 74

Conread position: 3-206
Cow position:
Alignm length: 206
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 117, 29

Conread position: 3-255
Cow position:
Alignm length: 259
Alignm identity: 170
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 83, 63

Conread position: 3-268
Cow position:
Alignm length: 274
Alignm identity: 187
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 74, 61

Conread position: 3-331
Cow position:
Alignm length: 336
Alignm identity: 225
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 123, 52

Conread position: 3-336
Cow position:
Alignm length: 339
Alignm identity: 232
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 70, 61

Conread position: 3-338
Cow position:
Alignm length: 339
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 66

Conread position: 3-338
Cow position:
Alignm length: 339
Alignm identity: 228
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 203, 107

Conread position: 3-338
Cow position:
Alignm length: 339
Alignm identity: 235
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 51, 62

Conread position: 3-339
Cow position:
Alignm length: 344
Alignm identity: 224
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 84, 61

Conread position: 4-331
Cow position:
Alignm length: 341
Alignm identity: 225
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 121, 49

Conread position: 5-333
Cow position:
Alignm length: 339
Alignm identity: 224
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 123, 49

Conread position: 6-331
Cow position:
Alignm length: 336
Alignm identity: 227
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 64, 58

Conread position: 6-333
Cow position:
Alignm length: 336
Alignm identity: 231
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 73, 58

Conread position: 6-345
Cow position:
Alignm length: 350
Alignm identity: 225
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 73

Conread position: 6-346
Cow position:
Alignm length: 347
Alignm identity: 224
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 118, 153

Conread position: 7-272
Cow position:
Alignm length: 282
Alignm identity: 194
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 58

Conread position: 7-328
Cow position:
Alignm length: 328
Alignm identity: 213
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 30, 61

Conread position: 11-207
Cow position:
Alignm length: 199
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 115, 69

Conread position: 11-335
Cow position:
Alignm length: 331
Alignm identity: 221
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 117, 12

Conread position: 11-337
Cow position:
Alignm length: 332
Alignm identity: 226
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 117, 148

Conread position: 12-201
Cow position:
Alignm length: 198
Alignm identity: 144
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 52

Conread position: 12-206
Cow position:
Alignm length: 195
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 12-206
Cow position:
Alignm length: 197
Alignm identity: 135
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 63

Conread position: 12-249
Cow position:
Alignm length: 243
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 67

Conread position: 12-251
Cow position:
Alignm length: 246
Alignm identity: 184
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 57, 52

Conread position: 12-255
Cow position:
Alignm length: 250
Alignm identity: 165
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 73, 148

Conread position: 12-260
Cow position:
Alignm length: 254
Alignm identity: 190
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 116, 52

Conread position: 12-266
Cow position:
Alignm length: 265
Alignm identity: 180
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 73, 46

Conread position: 12-268
Cow position:
Alignm length: 263
Alignm identity: 173
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 35

Conread position: 12-269
Cow position:
Alignm length: 262
Alignm identity: 173
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 113, 55

Conread position: 12-271
Cow position:
Alignm length: 275
Alignm identity: 183
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 58, 52

Conread position: 12-274
Cow position:
Alignm length: 267
Alignm identity: 187
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 113, 35

Conread position: 12-284
Cow position:
Alignm length: 287
Alignm identity: 204
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 70, 152

Conread position: 12-289
Cow position:
Alignm length: 282
Alignm identity: 199
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 56, 70

Conread position: 12-292
Cow position:
Alignm length: 292
Alignm identity: 205
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 75, 52

Conread position: 12-300
Cow position:
Alignm length: 299
Alignm identity: 211
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 116, 52

Conread position: 12-323
Cow position:
Alignm length: 328
Alignm identity: 226
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 74, 46

Conread position: 12-330
Cow position:
Alignm length: 340
Alignm identity: 245
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 28, 161

Conread position: 12-330
Cow position:
Alignm length: 326
Alignm identity: 216
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 116, 52

Conread position: 12-333
Cow position:
Alignm length: 332
Alignm identity: 226
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 113, 52

Conread position: 12-336
Cow position:
Alignm length: 331
Alignm identity: 221
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 70, 52

Conread position: 12-338
Cow position:
Alignm length: 330
Alignm identity: 217
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 73, 39

Conread position: 12-338
Cow position:
Alignm length: 337
Alignm identity: 231
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 58, 52

Conread position: 12-342
Cow position:
Alignm length: 345
Alignm identity: 237
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 52, 153

Conread position: 13-205
Cow position:
Alignm length: 195
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 113, 77

Conread position: 13-208
Cow position:
Alignm length: 196
Alignm identity: 136
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 112, 0

Conread position: 13-315
Cow position:
Alignm length: 315
Alignm identity: 210
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 116, 36

Conread position: 13-328
Cow position:
Alignm length: 325
Alignm identity: 228
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 112, 89

Conread position: 13-333
Cow position:
Alignm length: 326
Alignm identity: 229
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 59, 34

Conread position: 13-333
Cow position:
Alignm length: 329
Alignm identity: 236
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 113, 6

Conread position: 13-356
Cow position:
Alignm length: 350
Alignm identity: 239
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 113, 65

Conread position: 14-332
Cow position:
Alignm length: 331
Alignm identity: 230
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 67, 50

Conread position: 14-333
Cow position:
Alignm length: 331
Alignm identity: 217
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 111, 53

Conread position: 15-225
Cow position:
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 49

Conread position: 15-271
Cow position:
Alignm length: 266
Alignm identity: 175
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 36, 151

Conread position: 15-333
Cow position:
Alignm length: 338
Alignm identity: 225
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 10

Conread position: 15-337
Cow position:
Alignm length: 334
Alignm identity: 213
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 37

Conread position: 19-262
Cow position:
Alignm length: 255
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 19

Conread position: 20-306
Cow position:
Alignm length: 298
Alignm identity: 206
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 125, 7

Conread position: 21-302
Cow position:
Alignm length: 289
Alignm identity: 196
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 42, 48

Conread position: 21-338
Cow position:
Alignm length: 330
Alignm identity: 217
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 128

Conread position: 21-339
Cow position:
Alignm length: 332
Alignm identity: 227
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 34, 62

Conread position: 23-266
Cow position:
Alignm length: 251
Alignm identity: 170
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 102, 44

Conread position: 24-193
Cow position:
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 136

Conread position: 24-331
Cow position:
Alignm length: 316
Alignm identity: 211
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 5, 125

Conread position: 24-337
Cow position:
Alignm length: 318
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 179, 71

Conread position: 24-338
Cow position:
Alignm length: 327
Alignm identity: 224
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 104, 83

Conread position: 27-333
Cow position:
Alignm length: 313
Alignm identity: 208
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 183, 112

Conread position: 28-298
Cow position:
Alignm length: 276
Alignm identity: 193
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 182, 14

Conread position: 32-335
Cow position:
Alignm length: 312
Alignm identity: 210
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 95, 19

Conread position: 33-332
Cow position:
Alignm length: 309
Alignm identity: 212
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 39, 31

Conread position: 40-337
Cow position:
Alignm length: 309
Alignm identity: 209
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 27

Conread position: 42-250
Cow position:
Alignm length: 214
Alignm identity: 148
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 159

Conread position: 42-338
Cow position:
Alignm length: 309
Alignm identity: 205
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 87, 39

Conread position: 45-279
Cow position:
Alignm length: 252
Alignm identity: 176
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 126

Conread position: 45-333
Cow position:
Alignm length: 295
Alignm identity: 202
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 27, 22

Conread position: 46-346
Cow position:
Alignm length: 311
Alignm identity: 210
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 24, 18

Conread position: 49-333
Cow position:
Alignm length: 299
Alignm identity: 213
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 37, 59

Conread position: 49-336
Cow position:
Alignm length: 299
Alignm identity: 208
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 72, 18

Conread position: 53-228
Cow position:
Alignm length: 181
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 72, 87

Conread position: 56-266
Cow position:
Alignm length: 217
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 104

Conread position: 58-327
Cow position:
Alignm length: 281
Alignm identity: 196
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 67, 12

Conread position: 58-336
Cow position:
Alignm length: 285
Alignm identity: 198
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 67, 120

Conread position: 72-336
Cow position:
Alignm length: 268
Alignm identity: 186
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 53, 88

Conread position: 75-268
Cow position:
Alignm length: 200
Alignm identity: 147
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 53, 85

Conread position: 76-289
Cow position:
Alignm length: 238
Alignm identity: 173
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 5, 91

Conread position: 80-333
Cow position:
Alignm length: 266
Alignm identity: 180
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 22

Conread position: 81-333
Cow position:
Alignm length: 262
Alignm identity: 174
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 44, 37

Conread position: 81-333
Cow position:
Alignm length: 256
Alignm identity: 175
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 52, 78

Conread position: 83-336
Cow position:
Alignm length: 263
Alignm identity: 182
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 25, 35

Conread position: 106-333
Cow position:
Alignm length: 239
Alignm identity: 168
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 53

Conread position: 114-337
Cow position:
Alignm length: 231
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 46

Conread position: 131-337
Cow position:
Alignm length: 213
Alignm identity: 147
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 115, 27

Conread position: 160-330
Cow position:
Alignm length: 179
Alignm identity: 131
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 335-551
Cow position:
Alignm length: 225
Alignm identity: 166
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 13, 80

Conread position: 341-578
Cow position:
Alignm length: 249
Alignm identity: 189
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 16, 5

Conread position: 362-776
Cow position:
Alignm length: 434
Alignm identity: 286
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 77, 57

Conread position: 507-744
Cow position:
Alignm length: 241
Alignm identity: 174
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 23

Conread position: 589-798
Cow position:
Alignm length: 211
Alignm identity: 156
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 101, 14

Show alignments to all cow chromosomes.