Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Thy1-THY010098A10.5
        

               Conread position:
               1-269
               

               Cow position:
               chrX:42247418-42247141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 115
               

               Conread position:
               2-145
               

               Cow position:
               chrX:20787411-20787269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               2-270
               

               Cow position:
               chrX:841927-842199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               145, 33
               

               Conread position:
               7-292
               

               Cow position:
               chrX:47301132-47300839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               207
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               31, 11
               

               Conread position:
               8-156
               

               Cow position:
               chrX:10916530-10916671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               8-269
               

               Cow position:
               chrX:43049118-43049384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               195
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               91, 226
               

               Conread position:
               10-212
               

               Cow position:
               chrX:29770402-29770199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               93, 33
               

               Conread position:
               11-266
               

               Cow position:
               chrX:4269290-4269027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               141, 211
               

               Conread position:
               14-265
               

               Cow position:
               chrX:32419998-32420251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               107, 196
               

               Conread position:
               14-269
               

               Cow position:
               chrX:6234672-6234409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 90
               

               Conread position:
               14-270
               

               Cow position:
               chrX:3579724-3579986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               15-267
               

               Cow position:
               chrX:45993001-45993265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               80, 25
               

               Conread position:
               16-150
               

               Cow position:
               chrX:26619583-26619445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               16-270
               

               Cow position:
               chrX:28632700-28632443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               180
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               17, 65
               

               Conread position:
               16-270
               

               Cow position:
               chrX:47046738-47046467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               75, 217
               

               Conread position:
               17-258
               

               Cow position:
               chrX:29876286-29876043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               26, 106
               

               Conread position:
               18-215
               

               Cow position:
               chrX:44063933-44063737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               177, 136
               

               Conread position:
               18-270
               

               Cow position:
               chrX:12018059-12018334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               18-270
               

               Cow position:
               chrX:35383238-35382994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               30, 167
               

               Conread position:
               19-264
               

               Cow position:
               chrX:1499455-1499701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 16
               

               Conread position:
               19-270
               

               Cow position:
               chrX:13382110-13382373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               20-270
               

               Cow position:
               chrX:10831711-10831448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               21-148
               

               Cow position:
               chrX:45976669-45976791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               21-201
               

               Cow position:
               chrX:46984710-46984524 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               21-228
               

               Cow position:
               chrX:18216063-18216282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               21-269
               

               Cow position:
               chrX:45845882-45846142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               71, 258
               

               Conread position:
               21-270
               

               Cow position:
               chrX:40035658-40035400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               70, 138
               

               Conread position:
               22-237
               

               Cow position:
               chrX:47248999-47248782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               21, 210
               

               Conread position:
               22-240
               

               Cow position:
               chrX:1728632-1728422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               22-269
               

               Cow position:
               chrX:11313993-11313739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               54, 133
               

               Conread position:
               24-181
               

               Cow position:
               chrX:46672817-46672657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               24-186
               

               Cow position:
               chrX:6639915-6640082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               24-191
               

               Cow position:
               chrX:3161225-3161055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               24-199
               

               Cow position:
               chrX:7806169-7806345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               81, 34
               

               Conread position:
               24-205
               

               Cow position:
               chrX:4482753-4482941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               24-212
               

               Cow position:
               chrX:38967441-38967628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               121, 20
               

               Conread position:
               24-219
               

               Cow position:
               chrX:7362061-7361875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               24-223
               

               Cow position:
               chrX:35388116-35387911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               161
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               24-226
               

               Cow position:
               chrX:25571204-25571002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               166, 116
               

               Conread position:
               24-232
               

               Cow position:
               chrX:19019321-19019105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               104, 92
               

               Conread position:
               24-232
               

               Cow position:
               chrX:35609776-35609989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               24-234
               

               Cow position:
               chrX:43647952-43647743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               140, 52
               

               Conread position:
               24-236
               

               Cow position:
               chrX:28580012-28580231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               24-236
               

               Cow position:
               chrX:47453916-47454134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               24-241
               

               Cow position:
               chrX:45015376-45015586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               119, 69
               

               Conread position:
               24-242
               

               Cow position:
               chrX:13912870-13913077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               24-243
               

               Cow position:
               chrX:10306461-10306687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               91, 12
               

               Conread position:
               24-245
               

               Cow position:
               chrX:12249596-12249819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               182
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               171, 55
               

               Conread position:
               24-245
               

               Cow position:
               chrX:44396804-44397029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               52, 83
               

               Conread position:
               24-246
               

               Cow position:
               chrX:34532318-34532535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               195, 87
               

               Conread position:
               24-254
               

               Cow position:
               chrX:45043348-45043597 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               83, 146
               

               Conread position:
               24-261
               

               Cow position:
               chrX:4768541-4768774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               177, 19
               

               Conread position:
               24-268
               

               Cow position:
               chrX:7646050-7646291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               202, 70
               

               Conread position:
               24-268
               

               Cow position:
               chrX:7718644-7718889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 109
               

               Conread position:
               24-268
               

               Cow position:
               chrX:9425952-9425703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               78, 186
               

               Conread position:
               24-268
               

               Cow position:
               chrX:46771181-46770923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               27, 205
               

               Conread position:
               24-269
               

               Cow position:
               chrX:8925495-8925740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 77
               

               Conread position:
               24-269
               

               Cow position:
               chrX:11655878-11656122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               192
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               79, 207
               

               Conread position:
               24-269
               

               Cow position:
               chrX:31436272-31436515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               184
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               221, 70
               

               Conread position:
               24-269
               

               Cow position:
               chrX:35681136-35681383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               196
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               120, 51
               

               Conread position:
               24-270
               

               Cow position:
               chrX:15139754-15139505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 19
               

               Conread position:
               24-270
               

               Cow position:
               chrX:16762562-16762813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               196
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               122, 61
               

               Conread position:
               24-270
               

               Cow position:
               chrX:18695130-18694885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 96
               

               Conread position:
               24-270
               

               Cow position:
               chrX:29602041-29601786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 17
               

               Conread position:
               24-270
               

               Cow position:
               chrX:40481082-40480827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               79, 19
               

               Conread position:
               24-270
               

               Cow position:
               chrX:46073031-46072775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               24-270
               

               Cow position:
               chrX:47054737-47054479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               129, 44
               

               Conread position:
               24-271
               

               Cow position:
               chrX:34554517-34554766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               19, 68
               

               Conread position:
               24-308
               

               Cow position:
               chrX:28836111-28835822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               169, 22
               

               Conread position:
               25-136
               

               Cow position:
               chrX:33519408-33519523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               25-141
               

               Cow position:
               chrX:32870995-32870876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               73, 33
               

               Conread position:
               25-158
               

               Cow position:
               chrX:41733397-41733266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               25-161
               

               Cow position:
               chrX:32623373-32623513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               107
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               25-161
               

               Cow position:
               chrX:42499238-42499099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               25-174
               

               Cow position:
               chrX:33205201-33205050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               120, 88
               

               Conread position:
               25-178
               

               Cow position:
               chrX:48370888-48371044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               25-183
               

               Cow position:
               chrX:32978465-32978308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               70, 51
               

               Conread position:
               25-188
               

               Cow position:
               chrX:27176529-27176358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               25-192
               

               Cow position:
               chrX:16324173-16324006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               127, 88
               

               Conread position:
               25-192
               

               Cow position:
               chrX:42086652-42086821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               75, 123
               

               Conread position:
               25-192
               

               Cow position:
               chrX:48227821-48227650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               122, 18
               

               Conread position:
               25-194
               

               Cow position:
               chrX:4123626-4123798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               121, 75
               

               Conread position:
               25-197
               

               Cow position:
               chrX:13191753-13191581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               25-198
               

               Cow position:
               chrX:11806226-11806049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               25-202
               

               Cow position:
               chrX:28111297-28111477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               25-203
               

               Cow position:
               chrX:2206753-2206581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               119, 88
               

               Conread position:
               25-204
               

               Cow position:
               chrX:9837929-9838116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               133
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               25-205
               

               Cow position:
               chrX:46430067-46429887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               140
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               25-208
               

               Cow position:
               chrX:45658282-45658103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               37, 104
               

               Conread position:
               25-212
               

               Cow position:
               chrX:27174786-27174977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               152
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               25-215
               

               Cow position:
               chrX:28847088-28846898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               119, 88
               

               Conread position:
               25-216
               

               Cow position:
               chrX:6563303-6563505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               88, 35
               

               Conread position:
               25-216
               

               Cow position:
               chrX:17042481-17042677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               77, 185
               

               Conread position:
               25-217
               

               Cow position:
               chrX:48684432-48684239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               127, 75
               

               Conread position:
               25-220
               

               Cow position:
               chrX:13177674-13177480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               166, 138
               

               Conread position:
               25-222
               

               Cow position:
               chrX:42381309-42381112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               127, 90
               

               Conread position:
               25-223
               

               Cow position:
               chrX:12826538-12826738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               76, 142
               

               Conread position:
               25-225
               

               Cow position:
               chrX:42855199-42855401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               74, 168
               

               Conread position:
               25-226
               

               Cow position:
               chrX:18456183-18456395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               25-226
               

               Cow position:
               chrX:35042010-35042219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               25-227
               

               Cow position:
               chrX:678777-678577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               75, 109
               

               Conread position:
               25-227
               

               Cow position:
               chrX:15485836-15485630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               122, 197
               

               Conread position:
               25-227
               

               Cow position:
               chrX:27446479-27446691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               25-227
               

               Cow position:
               chrX:31294753-31294568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               170, 27
               

               Conread position:
               25-230
               

               Cow position:
               chrX:31745256-31745064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               69, 120
               

               Conread position:
               25-231
               

               Cow position:
               chrX:41673894-41674109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               25-232
               

               Cow position:
               chrX:10437874-10437668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               79, 149
               

               Conread position:
               25-232
               

               Cow position:
               chrX:38840679-38840891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               75, 50
               

               Conread position:
               25-233
               

               Cow position:
               chrX:36283136-36283354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               25-233
               

               Cow position:
               chrX:41403763-41403980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               25-233
               

               Cow position:
               chrX:41410311-41410528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               25-234
               

               Cow position:
               chrX:25816105-25815907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               25-235
               

               Cow position:
               chrX:20151641-20151851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               119, 68
               

               Conread position:
               25-236
               

               Cow position:
               chrX:7425256-7425475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               66, 147
               

               Conread position:
               25-236
               

               Cow position:
               chrX:36693026-36693238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               139, 117
               

               Conread position:
               25-236
               

               Cow position:
               chrX:39701018-39701230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               78, 18
               

               Conread position:
               25-237
               

               Cow position:
               chrX:2786757-2786553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               168, 16
               

               Conread position:
               25-237
               

               Cow position:
               chrX:32743329-32743540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               143, 87
               

               Conread position:
               25-237
               

               Cow position:
               chrX:35284414-35284625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               168
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               118, 65
               

               Conread position:
               25-237
               

               Cow position:
               chrX:40269267-40269491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               39, 213
               

               Conread position:
               25-238
               

               Cow position:
               chrX:16284156-16283936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               77, 212
               

               Conread position:
               25-238
               

               Cow position:
               chrX:30921977-30922189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               68, 18
               

               Conread position:
               25-239
               

               Cow position:
               chrX:20582821-20583030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               88, 75
               

               Conread position:
               25-239
               

               Cow position:
               chrX:22074591-22074803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               171
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               194, 167
               

               Conread position:
               25-239
               

               Cow position:
               chrX:29542428-29542209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               169, 0
               

               Conread position:
               25-239
               

               Cow position:
               chrX:41884627-41884404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               25-240
               

               Cow position:
               chrX:13245382-13245603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               25-240
               

               Cow position:
               chrX:25232381-25232598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               143, 205
               

               Conread position:
               25-242
               

               Cow position:
               chrX:12980040-12979827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               75, 168
               

               Conread position:
               25-242
               

               Cow position:
               chrX:33493566-33493786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               25-243
               

               Cow position:
               chrX:28013649-28013435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               120, 66
               

               Conread position:
               25-244
               

               Cow position:
               chrX:42339145-42338936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               173
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               25-245
               

               Cow position:
               chrX:1514610-1514398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 75
               

               Conread position:
               25-245
               

               Cow position:
               chrX:20709862-20710089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               179
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               61, 189
               

               Conread position:
               25-245
               

               Cow position:
               chrX:42585278-42585064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               208, 46
               

               Conread position:
               25-245
               

               Cow position:
               chrX:45412864-45412647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               99, 108
               

               Conread position:
               25-246
               

               Cow position:
               chrX:8517667-8517883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               74, 33
               

               Conread position:
               25-246
               

               Cow position:
               chrX:45113419-45113632 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               119, 66
               

               Conread position:
               25-251
               

               Cow position:
               chrX:2186049-2186274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               89, 125
               

               Conread position:
               25-251
               

               Cow position:
               chrX:47344085-47344310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               75, 105
               

               Conread position:
               25-252
               

               Cow position:
               chrX:13058371-13058595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               66, 146
               

               Conread position:
               25-258
               

               Cow position:
               chrX:44053049-44053290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               169, 0
               

               Conread position:
               25-261
               

               Cow position:
               chrX:14973944-14973708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               42, 64
               

               Conread position:
               25-261
               

               Cow position:
               chrX:35413423-35413651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               187
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               165, 63
               

               Conread position:
               25-262
               

               Cow position:
               chrX:17271498-17271247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               25-264
               

               Cow position:
               chrX:19015233-19015473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               187
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               200, 64
               

               Conread position:
               25-264
               

               Cow position:
               chrX:38852988-38853234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               75, 18
               

               Conread position:
               25-266
               

               Cow position:
               chrX:24132360-24132114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               93, 19
               

               Conread position:
               25-266
               

               Cow position:
               chrX:32747449-32747716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               23, 250
               

               Conread position:
               25-266
               

               Cow position:
               chrX:37489521-37489757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               127, 76
               

               Conread position:
               25-267
               

               Cow position:
               chrX:11073398-11073152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               69, 105
               

               Conread position:
               25-267
               

               Cow position:
               chrX:27442764-27442518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               120, 33
               

               Conread position:
               25-267
               

               Cow position:
               chrX:34754401-34754153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               75, 202
               

               Conread position:
               25-268
               

               Cow position:
               chrX:4865042-4865276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               216, 85
               

               Conread position:
               25-268
               

               Cow position:
               chrX:15007360-15007109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               189
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               61, 73
               

               Conread position:
               25-268
               

               Cow position:
               chrX:27432128-27431878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               70, 206
               

               Conread position:
               25-268
               

               Cow position:
               chrX:27516323-27516570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               120, 87
               

               Conread position:
               25-268
               

               Cow position:
               chrX:34411631-34411886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               75, 115
               

               Conread position:
               25-268
               

               Cow position:
               chrX:39558556-39558308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               170, 94
               

               Conread position:
               25-269
               

               Cow position:
               chrX:619217-618961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               25-269
               

               Cow position:
               chrX:1616257-1616000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               25-269
               

               Cow position:
               chrX:4633060-4632817 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               177
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               127, 69
               

               Conread position:
               25-269
               

               Cow position:
               chrX:6413837-6414088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               117, 45
               

               Conread position:
               25-269
               

               Cow position:
               chrX:9161379-9161622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               143, 18
               

               Conread position:
               25-269
               

               Cow position:
               chrX:13265829-13265590 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               186
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               203, 94
               

               Conread position:
               25-269
               

               Cow position:
               chrX:13647993-13647744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               173, 65
               

               Conread position:
               25-269
               

               Cow position:
               chrX:16790046-16789814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               170, 18
               

               Conread position:
               25-269
               

               Cow position:
               chrX:20340100-20339851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               78, 64
               

               Conread position:
               25-269
               

               Cow position:
               chrX:26940701-26940463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               210, 68
               

               Conread position:
               25-269
               

               Cow position:
               chrX:29289367-29289619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               78, 143
               

               Conread position:
               25-269
               

               Cow position:
               chrX:34990832-34991077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               151, 18
               

               Conread position:
               25-269
               

               Cow position:
               chrX:37232200-37232448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 223
               

               Conread position:
               25-269
               

               Cow position:
               chrX:37574647-37574881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               219, 93
               

               Conread position:
               25-269
               

               Cow position:
               chrX:37836378-37836627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               89, 201
               

               Conread position:
               25-269
               

               Cow position:
               chrX:40567390-40567639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               74, 163
               

               Conread position:
               25-269
               

               Cow position:
               chrX:40788995-40789253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               73, 148
               

               Conread position:
               25-270
               

               Cow position:
               chrX:151692-151947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               89, 50
               

               Conread position:
               25-270
               

               Cow position:
               chrX:3130372-3130614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               91, 131
               

               Conread position:
               25-270
               

               Cow position:
               chrX:5017617-5017369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               193
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               170, 85
               

               Conread position:
               25-270
               

               Cow position:
               chrX:5872104-5872359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 213
               

               Conread position:
               25-270
               

               Cow position:
               chrX:6265795-6265556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               170, 66
               

               Conread position:
               25-270
               

               Cow position:
               chrX:6690457-6690218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               128, 57
               

               Conread position:
               25-270
               

               Cow position:
               chrX:11856220-11856472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 22
               

               Conread position:
               25-270
               

               Cow position:
               chrX:12309598-12309344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               27, 18
               

               Conread position:
               25-270
               

               Cow position:
               chrX:17497887-17498127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               206, 76
               

               Conread position:
               25-270
               

               Cow position:
               chrX:17662806-17662553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 210
               

               Conread position:
               25-270
               

               Cow position:
               chrX:20697817-20697567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               60, 173
               

               Conread position:
               25-270
               

               Cow position:
               chrX:20801570-20801811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               203, 51
               

               Conread position:
               25-270
               

               Cow position:
               chrX:21672342-21672596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               192
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               75, 199
               

               Conread position:
               25-270
               

               Cow position:
               chrX:22624272-22624518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               78, 37
               

               Conread position:
               25-270
               

               Cow position:
               chrX:22821838-22822088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               77, 131
               

               Conread position:
               25-270
               

               Cow position:
               chrX:23091672-23091912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               198
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               202, 126
               

               Conread position:
               25-270
               

               Cow position:
               chrX:23514227-23513973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 26
               

               Conread position:
               25-270
               

               Cow position:
               chrX:25337970-25338230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               25-270
               

               Cow position:
               chrX:26440989-26440741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               91, 206
               

               Conread position:
               25-270
               

               Cow position:
               chrX:26625886-26625629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               74, 168
               

               Conread position:
               25-270
               

               Cow position:
               chrX:27394223-27393984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 88
               

               Conread position:
               25-270
               

               Cow position:
               chrX:28157276-28157540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               49, 149
               

               Conread position:
               25-270
               

               Cow position:
               chrX:31489303-31489562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               102, 21
               

               Conread position:
               25-270
               

               Cow position:
               chrX:35268681-35268907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               204, 33
               

               Conread position:
               25-270
               

               Cow position:
               chrX:35288451-35288700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               176, 51
               

               Conread position:
               25-270
               

               Cow position:
               chrX:36250071-36249819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               25-270
               

               Cow position:
               chrX:37843511-37843761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               123, 193
               

               Conread position:
               25-270
               

               Cow position:
               chrX:37910243-37910487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               204, 71
               

               Conread position:
               25-270
               

               Cow position:
               chrX:38549239-38549487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 129
               

               Conread position:
               25-270
               

               Cow position:
               chrX:40647769-40648028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 18
               

               Conread position:
               25-270
               

               Cow position:
               chrX:42461955-42461702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               25-270
               

               Cow position:
               chrX:42994405-42994655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 50
               

               Conread position:
               25-271
               

               Cow position:
               chrX:126583-126815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               196, 90
               

               Conread position:
               25-271
               

               Cow position:
               chrX:754749-755006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               25-271
               

               Cow position:
               chrX:11674855-11675109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               21, 155
               

               Conread position:
               25-271
               

               Cow position:
               chrX:20792027-20791772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               182
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               168, 0
               

               Conread position:
               25-271
               

               Cow position:
               chrX:38071980-38071723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               77, 192
               

               Conread position:
               25-271
               

               Cow position:
               chrX:47757138-47756885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               119, 156
               

               Conread position:
               26-148
               

               Cow position:
               chrX:45787446-45787565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               26-154
               

               Cow position:
               chrX:29049761-29049884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               103
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               26-157
               

               Cow position:
               chrX:7382115-7382246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               26-158
               

               Cow position:
               chrX:21795287-21795420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               26-160
               

               Cow position:
               chrX:25283354-25283224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               26-172
               

               Cow position:
               chrX:48536873-48536724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               76, 15
               

               Conread position:
               26-186
               

               Cow position:
               chrX:23061245-23061398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               26-192
               

               Cow position:
               chrX:21663101-21663269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               74, 21
               

               Conread position:
               26-196
               

               Cow position:
               chrX:17794777-17794946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               167, 103
               

               Conread position:
               26-197
               

               Cow position:
               chrX:35937284-35937117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               86, 46
               

               Conread position:
               26-202
               

               Cow position:
               chrX:17964731-17964551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               77, 171
               

               Conread position:
               26-204
               

               Cow position:
               chrX:2004169-2003992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               134, 69
               

               Conread position:
               26-206
               

               Cow position:
               chrX:4942958-4942782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               26-215
               

               Cow position:
               chrX:33020277-33020467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               169, 118
               

               Conread position:
               26-215
               

               Cow position:
               chrX:41790653-41790462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               88, 146
               

               Conread position:
               26-216
               

               Cow position:
               chrX:8917645-8917827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               184, 83
               

               Conread position:
               26-217
               

               Cow position:
               chrX:38006976-38006779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               26-221
               

               Cow position:
               chrX:9416901-9416702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               169, 0
               

               Conread position:
               26-225
               

               Cow position:
               chrX:47191607-47191418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               146
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               26-227
               

               Cow position:
               chrX:2383280-2383484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               161
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               26-227
               

               Cow position:
               chrX:15596829-15597028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               74, 160
               

               Conread position:
               26-227
               

               Cow position:
               chrX:19930447-19930646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               159
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               167, 126
               

               Conread position:
               26-227
               

               Cow position:
               chrX:28929633-28929832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               160, 66
               

               Conread position:
               26-227
               

               Cow position:
               chrX:30763630-30763426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               154, 48
               

               Conread position:
               26-227
               

               Cow position:
               chrX:38936492-38936692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               163
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               169, 124
               

               Conread position:
               26-230
               

               Cow position:
               chrX:21665802-21665596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               165
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               26-231
               

               Cow position:
               chrX:25237968-25238169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               166
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               117, 138
               

               Conread position:
               26-231
               

               Cow position:
               chrX:48195249-48195038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               26-232
               

               Cow position:
               chrX:31949139-31948937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               121, 74
               

               Conread position:
               26-234
               

               Cow position:
               chrX:38227298-38227090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               119, 70
               

               Conread position:
               26-235
               

               Cow position:
               chrX:877232-877032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               117, 95
               

               Conread position:
               26-236
               

               Cow position:
               chrX:10373100-10373322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               17, 149
               

               Conread position:
               26-236
               

               Cow position:
               chrX:13323205-13322990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               68, 89
               

               Conread position:
               26-236
               

               Cow position:
               chrX:25419370-25419149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               26-237
               

               Cow position:
               chrX:2648559-2648348 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               167, 67
               

               Conread position:
               26-237
               

               Cow position:
               chrX:3154455-3154240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               26-237
               

               Cow position:
               chrX:27514660-27514874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               73, 153
               

               Conread position:
               26-237
               

               Cow position:
               chrX:32020330-32020114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               121, 196
               

               Conread position:
               26-238
               

               Cow position:
               chrX:46722949-46722727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               26-239
               

               Cow position:
               chrX:7497035-7497247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               167, 126
               

               Conread position:
               26-239
               

               Cow position:
               chrX:29509652-29509430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               174
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               26-239
               

               Cow position:
               chrX:42011071-42011285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               76, 130
               

               Conread position:
               26-240
               

               Cow position:
               chrX:34238512-34238724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               120, 147
               

               Conread position:
               26-240
               

               Cow position:
               chrX:42470145-42469940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               26-240
               

               Cow position:
               chrX:47967391-47967609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               122, 89
               

               Conread position:
               26-242
               

               Cow position:
               chrX:2467671-2467891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               73, 181
               

               Conread position:
               26-242
               

               Cow position:
               chrX:20887853-20887636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               125, 50
               

               Conread position:
               26-243
               

               Cow position:
               chrX:45430225-45430010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               96, 166
               

               Conread position:
               26-245
               

               Cow position:
               chrX:488281-488507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               67, 184
               

               Conread position:
               26-245
               

               Cow position:
               chrX:7508930-7509157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               15, 44
               

               Conread position:
               26-245
               

               Cow position:
               chrX:13868485-13868718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               26-245
               

               Cow position:
               chrX:20752051-20752268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               127, 65
               

               Conread position:
               26-245
               

               Cow position:
               chrX:28097916-28098129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               194, 45
               

               Conread position:
               26-245
               

               Cow position:
               chrX:34441659-34441434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 28
               

               Conread position:
               26-245
               

               Cow position:
               chrX:48236603-48236830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               55, 213
               

               Conread position:
               26-250
               

               Cow position:
               chrX:32171090-32170868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               121, 57
               

               Conread position:
               26-251
               

               Cow position:
               chrX:18293723-18293943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               203, 81
               

               Conread position:
               26-251
               

               Cow position:
               chrX:21064078-21064297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               121, 49
               

               Conread position:
               26-251
               

               Cow position:
               chrX:30162788-30163016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               142, 0
               

               Conread position:
               26-252
               

               Cow position:
               chrX:23970180-23970395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               174
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               26-252
               

               Cow position:
               chrX:38094734-38094500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               77, 45
               

               Conread position:
               26-261
               

               Cow position:
               chrX:11581726-11581966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               57, 104
               

               Conread position:
               26-262
               

               Cow position:
               chrX:6544048-6544291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               168, 0
               

               Conread position:
               26-264
               

               Cow position:
               chrX:1503130-1503375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               194, 0
               

               Conread position:
               26-264
               

               Cow position:
               chrX:30421148-30420904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               56, 173
               

               Conread position:
               26-264
               

               Cow position:
               chrX:45501940-45502181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               74, 141
               

               Conread position:
               26-265
               

               Cow position:
               chrX:9997542-9997297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               186
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               169, 70
               

               Conread position:
               26-266
               

               Cow position:
               chrX:7721776-7722030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               194
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               26-266
               

               Cow position:
               chrX:10866076-10865836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               62, 79
               

               Conread position:
               26-266
               

               Cow position:
               chrX:21642687-21642444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               77, 32
               

               Conread position:
               26-266
               

               Cow position:
               chrX:41743704-41743952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 82
               

               Conread position:
               26-266
               

               Cow position:
               chrX:45598812-45598565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               68, 115
               

               Conread position:
               26-267
               

               Cow position:
               chrX:24105418-24105663 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               123, 159
               

               Conread position:
               26-267
               

               Cow position:
               chrX:41198896-41199145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               79, 88
               

               Conread position:
               26-267
               

               Cow position:
               chrX:42874769-42875022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               26-268
               

               Cow position:
               chrX:7571698-7571945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               169, 73
               

               Conread position:
               26-268
               

               Cow position:
               chrX:15329444-15329683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               167, 86
               

               Conread position:
               26-268
               

               Cow position:
               chrX:15814889-15815124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               168, 61
               

               Conread position:
               26-268
               

               Cow position:
               chrX:27509228-27508982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               188
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               168, 133
               

               Conread position:
               26-268
               

               Cow position:
               chrX:42492723-42492483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 162
               

               Conread position:
               26-269
               

               Cow position:
               chrX:6278714-6278457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               26-269
               

               Cow position:
               chrX:11746633-11746887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               26-269
               

               Cow position:
               chrX:30543495-30543243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 20
               

               Conread position:
               26-269
               

               Cow position:
               chrX:32128189-32127951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               84, 61
               

               Conread position:
               26-269
               

               Cow position:
               chrX:35224093-35224337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               99, 15
               

               Conread position:
               26-269
               

               Cow position:
               chrX:35542683-35542936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               26-269
               

               Cow position:
               chrX:40557884-40557638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               169, 64
               

               Conread position:
               26-269
               

               Cow position:
               chrX:41122863-41123103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               121, 63
               

               Conread position:
               26-269
               

               Cow position:
               chrX:45414508-45414263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               167, 215
               

               Conread position:
               26-269
               

               Cow position:
               chrX:48243660-48243425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               166, 52
               

               Conread position:
               26-270
               

               Cow position:
               chrX:878580-878338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               175
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               201, 33
               

               Conread position:
               26-270
               

               Cow position:
               chrX:2300725-2300967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               165, 67
               

               Conread position:
               26-270
               

               Cow position:
               chrX:5638378-5638127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               193
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               50, 142
               

               Conread position:
               26-270
               

               Cow position:
               chrX:6488377-6488621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               193
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               15, 68
               

               Conread position:
               26-270
               

               Cow position:
               chrX:8797039-8797298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               26-270
               

               Cow position:
               chrX:9855092-9855340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               74, 167
               

               Conread position:
               26-270
               

               Cow position:
               chrX:9953933-9954181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               187
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               74, 167
               

               Conread position:
               26-270
               

               Cow position:
               chrX:11082822-11082580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 150
               

               Conread position:
               26-270
               

               Cow position:
               chrX:11633470-11633724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               191
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               26-270
               

               Cow position:
               chrX:14900930-14900688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 117
               

               Conread position:
               26-270
               

               Cow position:
               chrX:15147395-15147151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               187
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               117, 40
               

               Conread position:
               26-270
               

               Cow position:
               chrX:16416300-16416551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               199
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               77, 16
               

               Conread position:
               26-270
               

               Cow position:
               chrX:17541755-17542002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               101, 90
               

               Conread position:
               26-270
               

               Cow position:
               chrX:17631011-17630761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               167, 134
               

               Conread position:
               26-270
               

               Cow position:
               chrX:17888614-17888377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               192
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               162, 47
               

               Conread position:
               26-270
               

               Cow position:
               chrX:19690009-19690257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               65, 159
               

               Conread position:
               26-270
               

               Cow position:
               chrX:21593075-21593329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               192
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               26-270
               

               Cow position:
               chrX:24366040-24365779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               80, 17
               

               Conread position:
               26-270
               

               Cow position:
               chrX:28134137-28134382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               66, 118
               

               Conread position:
               26-270
               

               Cow position:
               chrX:32309897-32310147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               79, 139
               

               Conread position:
               26-270
               

               Cow position:
               chrX:33639763-33640017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               26-270
               

               Cow position:
               chrX:36778199-36778450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               78, 189
               

               Conread position:
               26-270
               

               Cow position:
               chrX:37119391-37119638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               93, 54
               

               Conread position:
               26-270
               

               Cow position:
               chrX:41560447-41560215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               220, 75
               

               Conread position:
               26-270
               

               Cow position:
               chrX:42171508-42171252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               26-271
               

               Cow position:
               chrX:1810370-1810117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               118, 46
               

               Conread position:
               26-271
               

               Cow position:
               chrX:34454461-34454700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               123, 49
               

               Conread position:
               26-271
               

               Cow position:
               chrX:43527295-43527551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               26-271
               

               Cow position:
               chrX:47481591-47481843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               76, 206
               

               Conread position:
               26-273
               

               Cow position:
               chrX:14924792-14925045 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 28
               

               Conread position:
               26-275
               

               Cow position:
               chrX:44961539-44961798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               192
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               26-277
               

               Cow position:
               chrX:17231526-17231784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               119, 89
               

               Conread position:
               26-277
               

               Cow position:
               chrX:23564005-23563742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               26-277
               

               Cow position:
               chrX:34543579-34543833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               127, 43
               

               Conread position:
               26-307
               

               Cow position:
               chrX:47379675-47379389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               149, 64
               

               Conread position:
               27-157
               

               Cow position:
               chrX:6607213-6607346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               103
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               76, 14
               

               Conread position:
               27-161
               

               Cow position:
               chrX:16531790-16531928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               106
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               27-201
               

               Cow position:
               chrX:44731387-44731565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               27-206
               

               Cow position:
               chrX:24424595-24424414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               85, 96
               

               Conread position:
               27-212
               

               Cow position:
               chrX:44835023-44834830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               27-216
               

               Cow position:
               chrX:2029182-2029376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               72, 127
               

               Conread position:
               27-218
               

               Cow position:
               chrX:33855440-33855248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               168, 180
               

               Conread position:
               27-221
               

               Cow position:
               chrX:40452421-40452220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               27-223
               

               Cow position:
               chrX:42587636-42587437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               60, 132
               

               Conread position:
               27-226
               

               Cow position:
               chrX:42282225-42282422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               168, 82
               

               Conread position:
               27-227
               

               Cow position:
               chrX:8682137-8681932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               146
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               75, 51
               

               Conread position:
               27-227
               

               Cow position:
               chrX:36840664-36840865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               60, 122
               

               Conread position:
               27-229
               

               Cow position:
               chrX:11455260-11455050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               119, 9
               

               Conread position:
               27-232
               

               Cow position:
               chrX:35273144-35273357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               27, 149
               

               Conread position:
               27-234
               

               Cow position:
               chrX:7513307-7513512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               173, 0
               

               Conread position:
               27-234
               

               Cow position:
               chrX:48248617-48248827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               61, 174
               

               Conread position:
               27-235
               

               Cow position:
               chrX:46315588-46315374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               27-236
               

               Cow position:
               chrX:39546182-39545970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               16, 86
               

               Conread position:
               27-242
               

               Cow position:
               chrX:21004474-21004691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               27-245
               

               Cow position:
               chrX:23497872-23497653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 86
               

               Conread position:
               27-245
               

               Cow position:
               chrX:28866200-28865989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               179, 49
               

               Conread position:
               27-245
               

               Cow position:
               chrX:38935074-38935294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               76, 143
               

               Conread position:
               27-256
               

               Cow position:
               chrX:37956157-37956386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               222, 88
               

               Conread position:
               27-258
               

               Cow position:
               chrX:26285772-26286011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               116, 140
               

               Conread position:
               27-266
               

               Cow position:
               chrX:27680194-27680436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 73
               

               Conread position:
               27-266
               

               Cow position:
               chrX:33000697-33000935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               101, 16
               

               Conread position:
               27-268
               

               Cow position:
               chrX:7351092-7351340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               191
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               76, 32
               

               Conread position:
               27-268
               

               Cow position:
               chrX:28845638-28845873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               126, 52
               

               Conread position:
               27-269
               

               Cow position:
               chrX:7695552-7695792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               117, 58
               

               Conread position:
               27-269
               

               Cow position:
               chrX:9252385-9252122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               75, 56
               

               Conread position:
               27-269
               

               Cow position:
               chrX:26876089-26875840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               166, 19
               

               Conread position:
               27-269
               

               Cow position:
               chrX:31443029-31442788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               190
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               116, 158
               

               Conread position:
               27-269
               

               Cow position:
               chrX:43408790-43409050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               27-270
               

               Cow position:
               chrX:4826035-4825790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               69, 113
               

               Conread position:
               27-270
               

               Cow position:
               chrX:14599320-14599579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               16, 190
               

               Conread position:
               27-270
               

               Cow position:
               chrX:28878371-28878132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               12, 68
               

               Conread position:
               27-270
               

               Cow position:
               chrX:34502711-34502962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 208
               

               Conread position:
               27-270
               

               Cow position:
               chrX:42507856-42507606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               16, 158
               

               Conread position:
               27-270
               

               Cow position:
               chrX:46032929-46032685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               87, 99
               

               Conread position:
               27-271
               

               Cow position:
               chrX:4044058-4043821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               218, 88
               

               Conread position:
               28-157
               

               Cow position:
               chrX:41192478-41192609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               101
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               28-202
               

               Cow position:
               chrX:6643052-6643230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               16, 52
               

               Conread position:
               28-205
               

               Cow position:
               chrX:16541884-16541698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               28-220
               

               Cow position:
               chrX:4750507-4750316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               163, 38
               

               Conread position:
               28-227
               

               Cow position:
               chrX:29032208-29032405 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               136, 65
               

               Conread position:
               28-232
               

               Cow position:
               chrX:22812854-22813066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               73, 198
               

               Conread position:
               28-239
               

               Cow position:
               chrX:1055595-1055386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               166, 15
               

               Conread position:
               28-241
               

               Cow position:
               chrX:11844449-11844239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               121, 47
               

               Conread position:
               28-245
               

               Cow position:
               chrX:7161865-7162073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               200, 30
               

               Conread position:
               28-250
               

               Cow position:
               chrX:28787157-28787373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               165, 47
               

               Conread position:
               28-256
               

               Cow position:
               chrX:2701021-2700794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               11, 131
               

               Conread position:
               28-261
               

               Cow position:
               chrX:33466407-33466641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               116, 65
               

               Conread position:
               28-261
               

               Cow position:
               chrX:38439268-38439514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               191
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               28-263
               

               Cow position:
               chrX:37048786-37048546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 120
               

               Conread position:
               28-269
               

               Cow position:
               chrX:9201340-9201589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               28-269
               

               Cow position:
               chrX:38642051-38642290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               179
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               72, 136
               

               Conread position:
               28-269
               

               Cow position:
               chrX:46587611-46587863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               28-270
               

               Cow position:
               chrX:5900250-5900508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               13, 82
               

               Conread position:
               28-270
               

               Cow position:
               chrX:10959607-10959353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               28-270
               

               Cow position:
               chrX:11717989-11717741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               167, 67
               

               Conread position:
               28-270
               

               Cow position:
               chrX:19188730-19188973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 96
               

               Conread position:
               28-270
               

               Cow position:
               chrX:31260839-31260577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               10, 140
               

               Conread position:
               28-270
               

               Cow position:
               chrX:38963900-38964150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 87
               

               Conread position:
               28-270
               

               Cow position:
               chrX:41238572-41238312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               127, 87
               

               Conread position:
               28-271
               

               Cow position:
               chrX:7277713-7277954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               96, 63
               

               Conread position:
               29-193
               

               Cow position:
               chrX:22482894-22482727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               29-204
               

               Cow position:
               chrX:24200984-24201159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               134, 24
               

               Conread position:
               29-212
               

               Cow position:
               chrX:25411631-25411821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               52, 110
               

               Conread position:
               29-216
               

               Cow position:
               chrX:15545689-15545876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               51, 68
               

               Conread position:
               29-227
               

               Cow position:
               chrX:160241-160037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               29-227
               

               Cow position:
               chrX:24259787-24259588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               165, 137
               

               Conread position:
               29-232
               

               Cow position:
               chrX:630513-630307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               68, 31
               

               Conread position:
               29-232
               

               Cow position:
               chrX:25713591-25713793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               59, 28
               

               Conread position:
               29-234
               

               Cow position:
               chrX:10302133-10302339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               139, 115
               

               Conread position:
               29-234
               

               Cow position:
               chrX:35409460-35409662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               118, 47
               

               Conread position:
               29-236
               

               Cow position:
               chrX:11561945-11562160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               11, 197
               

               Conread position:
               29-264
               

               Cow position:
               chrX:17725769-17726011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 0
               

               Conread position:
               29-269
               

               Cow position:
               chrX:29120851-29121088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 65
               

               Conread position:
               29-269
               

               Cow position:
               chrX:31250183-31250429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               12, 100
               

               Conread position:
               29-270
               

               Cow position:
               chrX:917577-917326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 135
               

               Conread position:
               29-270
               

               Cow position:
               chrX:9635386-9635148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               164, 129
               

               Conread position:
               29-270
               

               Cow position:
               chrX:10412195-10411944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 147
               

               Conread position:
               29-270
               

               Cow position:
               chrX:27772165-27771923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               165, 33
               

               Conread position:
               29-270
               

               Cow position:
               chrX:34270201-34270444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               182
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               118, 67
               

               Conread position:
               29-270
               

               Cow position:
               chrX:39938728-39938481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 124
               

               Conread position:
               29-270
               

               Cow position:
               chrX:41167170-41166920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               29-271
               

               Cow position:
               chrX:41879140-41878887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               193
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               66, 155
               

               Conread position:
               30-268
               

               Cow position:
               chrX:36355919-36356152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               165, 16
               

               Conread position:
               30-270
               

               Cow position:
               chrX:27705385-27705628 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               113, 56
               

               Conread position:
               31-194
               

               Cow position:
               chrX:10252384-10252221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               71, 12
               

               Conread position:
               31-235
               

               Cow position:
               chrX:280927-281126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               162, 62
               

               Conread position:
               32-270
               

               Cow position:
               chrX:161217-161454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               9, 60
               

               Conread position:
               32-307
               

               Cow position:
               chrX:4091445-4091719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               112, 76
               

               Conread position:
               34-227
               

               Cow position:
               chrX:40183550-40183350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               65, 192
               

               Conread position:
               34-238
               

               Cow position:
               chrX:48652928-48652714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               6, 189
               

               Conread position:
               34-241
               

               Cow position:
               chrX:8730879-8731096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               34-242
               

               Cow position:
               chrX:36975749-36975959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               109, 191
               

               Conread position:
               34-261
               

               Cow position:
               chrX:17908484-17908255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 90
               

               Conread position:
               34-268
               

               Cow position:
               chrX:30963072-30962837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               119, 73
               

               Conread position:
               34-270
               

               Cow position:
               chrX:1176183-1175940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               68, 178
               

               Conread position:
               34-270
               

               Cow position:
               chrX:43780053-43779805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               60, 105
               

               Conread position:
               35-156
               

               Cow position:
               chrX:2523929-2523803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               100
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               35-198
               

               Cow position:
               chrX:45148975-45149145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               35-261
               

               Cow position:
               chrX:30833045-30832819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               197, 81
               

               Conread position:
               35-270
               

               Cow position:
               chrX:28105721-28105960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               79, 109
               

               Conread position:
               35-292
               

               Cow position:
               chrX:47303079-47302813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               68, 123
               

               Conread position:
               36-233
               

               Cow position:
               chrX:14884160-14883957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               36-234
               

               Cow position:
               chrX:34663042-34662846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               111, 53
               

               Conread position:
               36-268
               

               Cow position:
               chrX:8899826-8900067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               66, 178
               

               Conread position:
               36-268
               

               Cow position:
               chrX:12115840-12116087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               36-268
               

               Cow position:
               chrX:34401799-34402040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               36-268
               

               Cow position:
               chrX:38218508-38218754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               13, 118
               

               Conread position:
               36-269
               

               Cow position:
               chrX:31340505-31340752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               36-270
               

               Cow position:
               chrX:12405575-12405339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               110, 39
               

               Conread position:
               36-270
               

               Cow position:
               chrX:23583359-23583603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               178
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               7, 130
               

               Conread position:
               36-270
               

               Cow position:
               chrX:29545078-29544835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               67, 49
               

               Conread position:
               36-270
               

               Cow position:
               chrX:44054603-44054844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               87, 187
               

               Conread position:
               37-242
               

               Cow position:
               chrX:37781315-37781102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               66, 189
               

               Conread position:
               37-269
               

               Cow position:
               chrX:36961438-36961682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 200
               

               Conread position:
               37-270
               

               Cow position:
               chrX:8070899-8070657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               77, 192
               

               Conread position:
               37-270
               

               Cow position:
               chrX:18999689-18999930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               39-268
               

               Cow position:
               chrX:11939122-11938895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               192, 150
               

               Conread position:
               40-240
               

               Cow position:
               chrX:40116227-40116423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               159
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               156, 0
               

               Conread position:
               42-156
               

               Cow position:
               chrX:18812062-18812176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               42-243
               

               Cow position:
               chrX:8991695-8991897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               103, 73
               

               Conread position:
               42-243
               

               Cow position:
               chrX:45874806-45875010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               42-267
               

               Cow position:
               chrX:39126144-39126365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               204, 54
               

               Conread position:
               42-268
               

               Cow position:
               chrX:37540932-37541158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               105, 58
               

               Conread position:
               42-269
               

               Cow position:
               chrX:8869601-8869361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               34, 109
               

               Conread position:
               42-269
               

               Cow position:
               chrX:41526716-41526481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               59, 38
               

               Conread position:
               42-270
               

               Cow position:
               chrX:11589781-11589546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               44, 59
               

               Conread position:
               42-270
               

               Cow position:
               chrX:25035580-25035340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               60, 186
               

               Conread position:
               42-270
               

               Cow position:
               chrX:46532702-46532453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               186
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               61, 121
               

               Conread position:
               42-292
               

               Cow position:
               chrX:47484464-47484200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               43-245
               

               Cow position:
               chrX:43730406-43730209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               166
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               84, 72
               

               Conread position:
               44-216
               

               Cow position:
               chrX:44657155-44656977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               70, 113
               

               Conread position:
               44-269
               

               Cow position:
               chrX:3489075-3488847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               150, 47
               

               Conread position:
               44-269
               

               Cow position:
               chrX:31311835-31312070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               44-270
               

               Cow position:
               chrX:23785463-23785689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               58, 162
               

               Conread position:
               45-206
               

               Cow position:
               chrX:24149450-24149615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               45-239
               

               Cow position:
               chrX:1505523-1505719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               104, 24
               

               Conread position:
               45-270
               

               Cow position:
               chrX:34565103-34565328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               150, 44
               

               Conread position:
               46-193
               

               Cow position:
               chrX:16996318-16996461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               101, 58
               

               Conread position:
               46-234
               

               Cow position:
               chrX:40809498-40809693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               46-270
               

               Cow position:
               chrX:42235722-42235482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               47-206
               

               Cow position:
               chrX:7863758-7863596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               56, 137
               

               Conread position:
               47-270
               

               Cow position:
               chrX:41992228-41992004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               97, 20
               

               Conread position:
               48-242
               

               Cow position:
               chrX:31256681-31256874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               148, 68
               

               Conread position:
               48-242
               

               Cow position:
               chrX:48035241-48035436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               54, 100
               

               Conread position:
               49-227
               

               Cow position:
               chrX:25966855-25967030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               139, 44
               

               Conread position:
               50-231
               

               Cow position:
               chrX:36067835-36068014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               145, 53
               

               Conread position:
               52-264
               

               Cow position:
               chrX:32820847-32821065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 11
               

               Conread position:
               53-244
               

               Cow position:
               chrX:7336645-7336839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               23, 161
               

               Conread position:
               55-269
               

               Cow position:
               chrX:13785537-13785319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               4e-32
               

               Alignm gaps (pig, cow):
               140, 37
               

               Conread position:
               56-269
               

               Cow position:
               chrX:4279293-4279077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               58, 125
               

               Conread position:
               58-223
               

               Cow position:
               chrX:36060975-36061149 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               58-227
               

               Cow position:
               chrX:16514441-16514269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               35, 115
               

               Conread position:
               58-245
               

               Cow position:
               chrX:47186497-47186310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               85, 174
               

               Conread position:
               58-270
               

               Cow position:
               chrX:29680437-29680219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               59-194
               

               Cow position:
               chrX:27145447-27145583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               59-206
               

               Cow position:
               chrX:23341143-23340991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               59-222
               

               Cow position:
               chrX:30005093-30005256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               137, 77
               

               Conread position:
               59-237
               

               Cow position:
               chrX:29563546-29563374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               84, 105
               

               Conread position:
               59-269
               

               Cow position:
               chrX:18651220-18651000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               57, 0
               
UCSC Genome Browser
               Conread position:
               59-271
               

               Cow position:
               chrX:23299779-23300001 (view  custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               55, 163
               
UCSC Genome Browser
               
               
               
Conread position: 60-270

               
               
               
Cow position: chrX:46146735-46146519 (view  custom track)

               
               
               
Alignm length: 223

               
               
               
Alignm identity: 166

               
               
               
Alignm E-value: 3e-28

               
               
               
Alignm gaps (pig, cow): 100, 61
UCSC Genome Browser
               
               
               
Conread position: 61-236

               
               
               
Cow position: chrX:22465782-22465946 (view  custom track)

               
               
               
Alignm length: 178

               
               
               
Alignm identity: 133

               
               
               
Alignm E-value: 1e-22

               
               
               
Alignm gaps (pig, cow): 134, 38

               
               
               Conread position:61-266
               
               
               Cow position:chrX:35885903-35885697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):86, 153

               
               
               Conread position:61-270
               
               
               Cow position:chrX:22387421-22387204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):29, 174

               
               
               Conread position:62-245
               
               
               Cow position:chrX:6407376-6407560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 109

               
               
               Conread position:62-245
               
               
               Cow position:chrX:31252245-31252431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 14

               
               
               Conread position:62-270
               
               
               Cow position:chrX:46433310-46433533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:63-256
               
               
               Cow position:chrX:37955666-37955857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):165, 31

               
               
               Conread position:63-267
               
               
               Cow position:chrX:20168386-20168597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 41

               
               
               Conread position:63-269
               
               
               Cow position:chrX:34792482-34792270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:63-270
               
               
               Cow position:chrX:4398954-4399167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):37, 125

               
               
               Conread position:64-204
               
               
               Cow position:chrX:25208017-25207869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:65-192
               
               
               Cow position:chrX:41271377-41271249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:65-270
               
               
               Cow position:chrX:30133498-30133276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:66-264
               
               
               Cow position:chrX:14003813-14003610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):37, 160

               
               
               Conread position:66-271
               
               
               Cow position:chrX:23666954-23667169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:71-270
               
               
               Cow position:chrX:41068564-41068767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):115, 21

               
               
               Conread position:72-258
               
               
               Cow position:chrX:35969246-35969056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):8, 44

               
               
               Conread position:72-270
               
               
               Cow position:chrX:27227962-27228168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):80, 5

               
               
               Conread position:72-307
               
               
               Cow position:chrX:36723255-36723010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:77-260
               
               
               Cow position:chrX:33590570-33590758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):91, 155

               
               
               Conread position:82-269
               
               
               Cow position:chrX:20584166-20584369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:86-299
               
               
               Cow position:chrX:29055971-29056186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 77

               
               
               Conread position:88-270
               
               
               Cow position:chrX:29723595-29723782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:90-270
               
               
               Cow position:chrX:27685103-27685290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:94-270
               
               
               Cow position:chrX:39415510-39415328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:95-270
               
               
               Cow position:chrX:11614560-11614740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):46, 137

               
               
               Conread position:95-270
               
               
               Cow position:chrX:21566263-21566449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:97-240
               
               
               Cow position:chrX:27269833-27269973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:97-265
               
               
               Cow position:chrX:31987004-31986826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 32

               
               
               Conread position:97-270
               
               
               Cow position:chrX:7710680-7710497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:98-268
               
               
               Cow position:chrX:11085193-11085023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):51, 111

               
               
               Conread position:98-269
               
               
               Cow position:chrX:42873256-42873428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:99-233
               
               
               Cow position:chrX:616397-616258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:99-269
               
               
               Cow position:chrX:32215062-32215239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:99-270
               
               
               Cow position:chrX:18204598-18204425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):53, 122

               
               
               Conread position:99-270
               
               
               Cow position:chrX:41027022-41027201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):96, 45

               
               
               Conread position:101-268
               
               
               Cow position:chrX:5118635-5118462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:103-270
               
               
               Cow position:chrX:9365806-9365634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):92, 108

               
               
               Conread position:104-270
               
               
               Cow position:chrX:45875261-45875434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:105-261
               
               
               Cow position:chrX:38728608-38728767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:105-268
               
               
               Cow position:chrX:48044641-48044474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 24

               
               
               Conread position:108-270
               
               
               Cow position:chrX:19003174-19003339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):80, 122

               
               
               Conread position:113-270
               
               
               Cow position:chrX:20790800-20790956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 132

               
               
               Conread position:115-264
               
               
               Cow position:chrX:5679685-5679533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:119-270
               
               
               Cow position:chrX:29194119-29194274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):77, 64

               
               
               Conread position:122-270
               
               
               Cow position:chrX:38654542-38654388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):74, 46

               
               
               Conread position:123-268
               
               
               Cow position:chrX:10079560-10079415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 106

               
               
               Conread position:127-273
               
               
               Cow position:chrX:35848454-35848609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:129-270
               
               
               Cow position:chrX:29488107-29487966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 34

               
               
               Conread position:146-270
               
               
               Cow position:chrX:20882025-20881897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:558-796
               
               
               Cow position:chrX:41556523-41556771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):99, 24
Show alignments to all cow chromosomes.
Conread position:	1-269
Cow position:	chrX:42247418-42247141 (view UCSC Genome Browser custom track)
Alignm length:	280
Alignm identity:	211
Alignm E-value:	0
Alignm gaps (pig, cow):	13, 115
Conread position:	2-145
Cow position:	chrX:20787411-20787269 (view UCSC Genome Browser custom track)
Alignm length:	146
Alignm identity:	114
Alignm E-value:	6e-25
Alignm gaps (pig, cow):	10, 16
Conread position:	2-270
Cow position:	chrX:841927-842199 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	199
Alignm E-value:	7e-37
Alignm gaps (pig, cow):	145, 33
Conread position:	7-292
Cow position:	chrX:47301132-47300839 (view UCSC Genome Browser custom track)
Alignm length:	301
Alignm identity:	207
Alignm E-value:	8e-28
Alignm gaps (pig, cow):	31, 11
Conread position:	8-156
Cow position:	chrX:10916530-10916671 (view UCSC Genome Browser custom track)
Alignm length:	149
Alignm identity:	113
Alignm E-value:	4e-22
Alignm gaps (pig, cow):	11, 0
Conread position:	8-269
Cow position:	chrX:43049118-43049384 (view UCSC Genome Browser custom track)
Alignm length:	269
Alignm identity:	195
Alignm E-value:	9.99967e-42
Alignm gaps (pig, cow):	91, 226
Conread position:	10-212
Cow position:	chrX:29770402-29770199 (view UCSC Genome Browser custom track)
Alignm length:	209
Alignm identity:	153
Alignm E-value:	9e-29
Alignm gaps (pig, cow):	93, 33
Conread position:	11-266
Cow position:	chrX:4269290-4269027 (view UCSC Genome Browser custom track)
Alignm length:	267
Alignm identity:	188
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	141, 211
Conread position:	14-265
Cow position:	chrX:32419998-32420251 (view UCSC Genome Browser custom track)
Alignm length:	259
Alignm identity:	188
Alignm E-value:	2e-37
Alignm gaps (pig, cow):	107, 196
Conread position:	14-269
Cow position:	chrX:6234672-6234409 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	208
Alignm E-value:	0
Alignm gaps (pig, cow):	10, 90
Conread position:	14-270
Cow position:	chrX:3579724-3579986 (view UCSC Genome Browser custom track)
Alignm length:	263
Alignm identity:	203
Alignm E-value:	0
Alignm gaps (pig, cow):	135, 0
Conread position:	15-267
Cow position:	chrX:45993001-45993265 (view UCSC Genome Browser custom track)
Alignm length:	268
Alignm identity:	187
Alignm E-value:	3e-28
Alignm gaps (pig, cow):	80, 25
Conread position:	16-150
Cow position:	chrX:26619583-26619445 (view UCSC Genome Browser custom track)
Alignm length:	139
Alignm identity:	110
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	17, 0
Conread position:	16-270
Cow position:	chrX:28632700-28632443 (view UCSC Genome Browser custom track)
Alignm length:	262
Alignm identity:	180
Alignm E-value:	9e-29
Alignm gaps (pig, cow):	17, 65
Conread position:	17-258
Cow position:	chrX:29876286-29876043 (view UCSC Genome Browser custom track)
Alignm length:	252
Alignm identity:	187
Alignm E-value:	5e-34
Alignm gaps (pig, cow):	26, 106
Conread position:	18-215
Cow position:	chrX:44063933-44063737 (view UCSC Genome Browser custom track)
Alignm length:	200
Alignm identity:	143
Alignm E-value:	8e-28
Alignm gaps (pig, cow):	177, 136
Conread position:	18-270
Cow position:	chrX:12018059-12018334 (view UCSC Genome Browser custom track)
Alignm length:	276
Alignm identity:	197
Alignm E-value:	5e-33
Alignm gaps (pig, cow):	73, 0
Conread position:	19-264
Cow position:	chrX:1499455-1499701 (view UCSC Genome Browser custom track)
Alignm length:	253
Alignm identity:	199
Alignm E-value:	0
Alignm gaps (pig, cow):	131, 16
Conread position:	19-270
Cow position:	chrX:13382110-13382373 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	202
Alignm E-value:	0
Alignm gaps (pig, cow):	83, 0
Conread position:	20-270
Cow position:	chrX:10831711-10831448 (view UCSC Genome Browser custom track)
Alignm length:	264
Alignm identity:	199
Alignm E-value:	0
Alignm gaps (pig, cow):	83, 0