Cow genome map

Conread name: Ss1.1-Thy1-THY010098G02.5

Conread position: 1-181
Cow position:
Alignm length: 187
Alignm identity: 136
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 54

Conread position: 1-189
Cow position:
Alignm length: 190
Alignm identity: 136
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 52

Conread position: 1-189
Cow position:
Alignm length: 190
Alignm identity: 129
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 1-191
Cow position:
Alignm length: 192
Alignm identity: 136
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 128, 27

Conread position: 1-196
Cow position:
Alignm length: 203
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 51, 104

Conread position: 1-260
Cow position:
Alignm length: 268
Alignm identity: 175
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 98, 212

Conread position: 1-264
Cow position:
Alignm length: 266
Alignm identity: 172
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 82, 39

Conread position: 1-270
Cow position:
Alignm length: 279
Alignm identity: 191
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 155, 28

Conread position: 1-293
Cow position:
Alignm length: 294
Alignm identity: 195
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 276, 87

Conread position: 1-294
Cow position:
Alignm length: 296
Alignm identity: 190
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 22, 191

Conread position: 1-301
Cow position:
Alignm length: 304
Alignm identity: 203
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 35

Conread position: 2-190
Cow position:
Alignm length: 192
Alignm identity: 137
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 109, 28

Conread position: 2-194
Cow position:
Alignm length: 195
Alignm identity: 150
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 33, 0

Conread position: 2-261
Cow position:
Alignm length: 262
Alignm identity: 171
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 21, 119

Conread position: 2-293
Cow position:
Alignm length: 293
Alignm identity: 191
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 21, 123

Conread position: 2-297
Cow position:
Alignm length: 311
Alignm identity: 212
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 33, 186

Conread position: 3-188
Cow position:
Alignm length: 187
Alignm identity: 133
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 136, 20

Conread position: 3-264
Cow position:
Alignm length: 267
Alignm identity: 176
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 142, 58

Conread position: 4-189
Cow position:
Alignm length: 187
Alignm identity: 136
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 149, 19

Conread position: 4-270
Cow position:
Alignm length: 268
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 23

Conread position: 5-293
Cow position:
Alignm length: 291
Alignm identity: 191
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 33, 264

Conread position: 5-298
Cow position:
Alignm length: 294
Alignm identity: 209
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 194, 0

Conread position: 6-189
Cow position:
Alignm length: 184
Alignm identity: 134
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 0

Conread position: 6-198
Cow position:
Alignm length: 193
Alignm identity: 137
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 6-198
Cow position:
Alignm length: 194
Alignm identity: 140
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 6-294
Cow position:
Alignm length: 289
Alignm identity: 199
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 21, 0

Conread position: 6-295
Cow position:
Alignm length: 290
Alignm identity: 192
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 6-298
Cow position:
Alignm length: 293
Alignm identity: 191
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 6-298
Cow position:
Alignm length: 295
Alignm identity: 198
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 96, 222

Conread position: 7-269
Cow position:
Alignm length: 269
Alignm identity: 181
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 212, 21

Conread position: 7-298
Cow position:
Alignm length: 302
Alignm identity: 209
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 58, 22

Conread position: 8-187
Cow position:
Alignm length: 180
Alignm identity: 124
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 8-196
Cow position:
Alignm length: 189
Alignm identity: 141
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 8-260
Cow position:
Alignm length: 255
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 92

Conread position: 8-261
Cow position:
Alignm length: 255
Alignm identity: 177
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 26, 202

Conread position: 8-269
Cow position:
Alignm length: 264
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 50, 15

Conread position: 9-164
Cow position:
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 141, 25

Conread position: 9-184
Cow position:
Alignm length: 176
Alignm identity: 127
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 9-187
Cow position:
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 9-264
Cow position:
Alignm length: 262
Alignm identity: 176
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 204, 19

Conread position: 9-295
Cow position:
Alignm length: 287
Alignm identity: 188
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 9-297
Cow position:
Alignm length: 290
Alignm identity: 198
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 246, 96

Conread position: 9-298
Cow position:
Alignm length: 295
Alignm identity: 193
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 153, 253

Conread position: 10-109
Cow position:
Alignm length: 100
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 10-263
Cow position:
Alignm length: 255
Alignm identity: 166
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 245, 18

Conread position: 10-264
Cow position:
Alignm length: 263
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 210, 13

Conread position: 10-296
Cow position:
Alignm length: 287
Alignm identity: 198
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 89, 0

Conread position: 10-297
Cow position:
Alignm length: 288
Alignm identity: 197
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 238, 0

Conread position: 10-298
Cow position:
Alignm length: 291
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 245, 19

Conread position: 10-298
Cow position:
Alignm length: 289
Alignm identity: 202
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 94, 0

Conread position: 11-154
Cow position:
Alignm length: 146
Alignm identity: 110
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 24, 95

Conread position: 11-269
Cow position:
Alignm length: 259
Alignm identity: 177
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 11-297
Cow position:
Alignm length: 287
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 192, 0

Conread position: 12-184
Cow position:
Alignm length: 177
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 12-298
Cow position:
Alignm length: 291
Alignm identity: 195
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 87, 169

Conread position: 13-184
Cow position:
Alignm length: 173
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 116, 123

Conread position: 13-223
Cow position:
Alignm length: 211
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 13-298
Cow position:
Alignm length: 288
Alignm identity: 199
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 93

Conread position: 13-303
Cow position:
Alignm length: 292
Alignm identity: 185
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 242, 135

Conread position: 14-191
Cow position:
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 14-223
Cow position:
Alignm length: 211
Alignm identity: 149
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 197, 16

Conread position: 14-260
Cow position:
Alignm length: 252
Alignm identity: 166
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 14, 86

Conread position: 14-292
Cow position:
Alignm length: 282
Alignm identity: 195
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 17, 48

Conread position: 14-298
Cow position:
Alignm length: 290
Alignm identity: 202
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 166, 9

Conread position: 14-300
Cow position:
Alignm length: 291
Alignm identity: 192
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 13, 92

Conread position: 15-195
Cow position:
Alignm length: 181
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 16-187
Cow position:
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 16-265
Cow position:
Alignm length: 250
Alignm identity: 172
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 7, 0

Conread position: 17-189
Cow position:
Alignm length: 173
Alignm identity: 124
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 18-182
Cow position:
Alignm length: 172
Alignm identity: 125
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 22-188
Cow position:
Alignm length: 167
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 22-196
Cow position:
Alignm length: 175
Alignm identity: 136
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 163, 0

Conread position: 25-297
Cow position:
Alignm length: 284
Alignm identity: 194
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 93, 36

Conread position: 25-298
Cow position:
Alignm length: 274
Alignm identity: 181
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 246, 0

Conread position: 25-298
Cow position:
Alignm length: 279
Alignm identity: 191
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 95, 75

Conread position: 29-297
Cow position:
Alignm length: 271
Alignm identity: 185
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 71, 20

Conread position: 29-298
Cow position:
Alignm length: 272
Alignm identity: 181
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 7, 88

Conread position: 30-178
Cow position:
Alignm length: 149
Alignm identity: 111
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 30-184
Cow position:
Alignm length: 155
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 30-188
Cow position:
Alignm length: 159
Alignm identity: 122
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 30-188
Cow position:
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 30-189
Cow position:
Alignm length: 160
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 30-189
Cow position:
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 30-191
Cow position:
Alignm length: 163
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 30-194
Cow position:
Alignm length: 165
Alignm identity: 118
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 30-196
Cow position:
Alignm length: 167
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 147, 0

Conread position: 30-196
Cow position:
Alignm length: 167
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 30-198
Cow position:
Alignm length: 169
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 30-246
Cow position:
Alignm length: 221
Alignm identity: 148
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 211

Conread position: 30-255
Cow position:
Alignm length: 236
Alignm identity: 159
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 81, 109

Conread position: 30-261
Cow position:
Alignm length: 233
Alignm identity: 157
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 224, 70

Conread position: 30-262
Cow position:
Alignm length: 233
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 195, 0

Conread position: 30-262
Cow position:
Alignm length: 233
Alignm identity: 168
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 74, 0

Conread position: 30-262
Cow position:
Alignm length: 235
Alignm identity: 155
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 177, 20

Conread position: 30-263
Cow position:
Alignm length: 234
Alignm identity: 162
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 168, 0

Conread position: 30-269
Cow position:
Alignm length: 241
Alignm identity: 157
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 230, 90

Conread position: 30-269
Cow position:
Alignm length: 247
Alignm identity: 163
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 185

Conread position: 30-274
Cow position:
Alignm length: 248
Alignm identity: 182
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 87, 110

Conread position: 30-284
Cow position:
Alignm length: 257
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 100, 35

Conread position: 30-293
Cow position:
Alignm length: 264
Alignm identity: 176
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 30-297
Cow position:
Alignm length: 273
Alignm identity: 189
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 43, 239

Conread position: 30-297
Cow position:
Alignm length: 268
Alignm identity: 178
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 30-297
Cow position:
Alignm length: 270
Alignm identity: 174
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 182, 65

Conread position: 30-297
Cow position:
Alignm length: 268
Alignm identity: 176
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 84, 0

Conread position: 30-297
Cow position:
Alignm length: 280
Alignm identity: 185
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 171

Conread position: 30-297
Cow position:
Alignm length: 268
Alignm identity: 184
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 81, 0

Conread position: 30-298
Cow position:
Alignm length: 281
Alignm identity: 199
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 96, 57

Conread position: 30-298
Cow position:
Alignm length: 269
Alignm identity: 188
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 70, 0

Conread position: 30-298
Cow position:
Alignm length: 269
Alignm identity: 180
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 30-298
Cow position:
Alignm length: 269
Alignm identity: 175
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 30-299
Cow position:
Alignm length: 270
Alignm identity: 192
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 101, 0

Conread position: 30-300
Cow position:
Alignm length: 272
Alignm identity: 183
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 267, 31

Conread position: 31-188
Cow position:
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 31-261
Cow position:
Alignm length: 231
Alignm identity: 155
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 31-266
Cow position:
Alignm length: 242
Alignm identity: 171
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 81, 31

Conread position: 31-297
Cow position:
Alignm length: 267
Alignm identity: 180
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 31-298
Cow position:
Alignm length: 268
Alignm identity: 182
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 218, 0

Conread position: 32-189
Cow position:
Alignm length: 158
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 33-189
Cow position:
Alignm length: 157
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 33-297
Cow position:
Alignm length: 265
Alignm identity: 178
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 81, 0

Conread position: 33-298
Cow position:
Alignm length: 268
Alignm identity: 190
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 83, 123

Conread position: 34-253
Cow position:
Alignm length: 220
Alignm identity: 148
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 104, 0

Conread position: 34-271
Cow position:
Alignm length: 239
Alignm identity: 166
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 94, 70

Conread position: 34-297
Cow position:
Alignm length: 267
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 182, 46

Conread position: 34-298
Cow position:
Alignm length: 265
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 36-307
Cow position:
Alignm length: 275
Alignm identity: 180
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 7, 114

Conread position: 41-196
Cow position:
Alignm length: 156
Alignm identity: 114
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 42-192
Cow position:
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 23

Conread position: 42-245
Cow position:
Alignm length: 204
Alignm identity: 142
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 42-298
Cow position:
Alignm length: 257
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 45-297
Cow position:
Alignm length: 256
Alignm identity: 169
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 147

Conread position: 47-311
Cow position:
Alignm length: 268
Alignm identity: 183
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 142, 52

Conread position: 55-299
Cow position:
Alignm length: 251
Alignm identity: 165
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 141, 208

Conread position: 60-298
Cow position:
Alignm length: 243
Alignm identity: 165
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 139, 44

Conread position: 65-293
Cow position:
Alignm length: 229
Alignm identity: 150
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 68-295
Cow position:
Alignm length: 234
Alignm identity: 156
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 132, 195

Conread position: 104-266
Cow position:
Alignm length: 163
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 115-298
Cow position:
Alignm length: 184
Alignm identity: 134
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 9, 0

Show alignments to all cow chromosomes.