• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
Ss1.1-Thy1-THY010104H08.5
        

               
Conread position:
               
213-557
               

               
Cow position:
               
chr21:8426736-8426379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
219-668
               

               
Cow position:
               
chr21:41621415-41620946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
220-668
               

               
Cow position:
               
chr21:3763462-3763911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
223-629
               

               
Cow position:
               
chr21:12461688-12462105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
62, 26
               

               
Conread position:
               
223-668
               

               
Cow position:
               
chr21:41156155-41155688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
224-563
               

               
Cow position:
               
chr21:44214391-44214056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
182, 20
               

               
Conread position:
               
224-667
               

               
Cow position:
               
chr21:33982531-33982981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 131
               

               
Conread position:
               
227-648
               

               
Cow position:
               
chr21:12154405-12153982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
227-650
               

               
Cow position:
               
chr21:41590285-41590712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
6, 132
               

               
Conread position:
               
228-667
               

               
Cow position:
               
chr21:19195882-19196339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
228-668
               

               
Cow position:
               
chr21:11739841-11740304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
97, 69
               

               
Conread position:
               
229-590
               

               
Cow position:
               
chr21:44658838-44658487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
229-607
               

               
Cow position:
               
chr21:30222618-30222234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 22
               

               
Conread position:
               
229-621
               

               
Cow position:
               
chr21:27810666-27810278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
81, 15
               

               
Conread position:
               
229-627
               

               
Cow position:
               
chr21:15584145-15584546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
229-633
               

               
Cow position:
               
chr21:48233900-48234297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 22
               

               
Conread position:
               
229-651
               

               
Cow position:
               
chr21:34654346-34653926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
229-666
               

               
Cow position:
               
chr21:27863241-27863691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
229-667
               

               
Cow position:
               
chr21:38901041-38900602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 82
               

               
Conread position:
               
229-668
               

               
Cow position:
               
chr21:40134422-40133982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
108, 28
               

               
Conread position:
               
230-640
               

               
Cow position:
               
chr21:938296-937894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
67, 29
               

               
Conread position:
               
230-666
               

               
Cow position:
               
chr21:30592040-30592475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
230-668
               

               
Cow position:
               
chr21:25345144-25344705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 149
               

               
Conread position:
               
231-668
               

               
Cow position:
               
chr21:6834324-6833879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
232-640
               

               
Cow position:
               
chr21:957942-957521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
232-667
               

               
Cow position:
               
chr21:17184190-17183750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
75, 8
               

               
Conread position:
               
233-465
               

               
Cow position:
               
chr21:39394023-39393783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
233-667
               

               
Cow position:
               
chr21:4400065-4399627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
165, 18
               

               
Conread position:
               
233-667
               

               
Cow position:
               
chr21:6051783-6051334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
28, 142
               

               
Conread position:
               
234-666
               

               
Cow position:
               
chr21:44251570-44251997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
76, 23
               

               
Conread position:
               
234-668
               

               
Cow position:
               
chr21:28733640-28734085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 39
               

               
Conread position:
               
236-668
               

               
Cow position:
               
chr21:32559102-32559527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 8
               

               
Conread position:
               
236-668
               

               
Cow position:
               
chr21:38449182-38449625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
78, 88
               

               
Conread position:
               
237-665
               

               
Cow position:
               
chr21:5898140-5898568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
237-665
               

               
Cow position:
               
chr21:7673382-7672962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
83, 73
               

               
Conread position:
               
237-669
               

               
Cow position:
               
chr21:5427195-5426769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
112, 20
               

               
Conread position:
               
237-670
               

               
Cow position:
               
chr21:641853-641409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 118
               

               
Conread position:
               
237-672
               

               
Cow position:
               
chr21:46848862-46849300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
15, 128
               

               
Conread position:
               
238-666
               

               
Cow position:
               
chr21:3585097-3585529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
240-538
               

               
Cow position:
               
chr21:742541-742245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
12, 113
               

               
Conread position:
               
240-661
               

               
Cow position:
               
chr21:28211443-28211030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
240-668
               

               
Cow position:
               
chr21:32339478-32339910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
12, 119
               

               
Conread position:
               
243-666
               

               
Cow position:
               
chr21:29213891-29214320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
18, 256
               

               
Conread position:
               
244-632
               

               
Cow position:
               
chr21:20153218-20152810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 7
               

               
Conread position:
               
244-667
               

               
Cow position:
               
chr21:31253796-31253364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
17, 115
               

               
Conread position:
               
244-668
               

               
Cow position:
               
chr21:802062-802467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 7
               

               
Conread position:
               
244-669
               

               
Cow position:
               
chr21:11644704-11645143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 114
               

               
Conread position:
               
245-668
               

               
Cow position:
               
chr21:37480230-37479783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 117
               

               
Conread position:
               
251-668
               

               
Cow position:
               
chr21:30848693-30849112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
97, 59
               

               
Conread position:
               
251-668
               

               
Cow position:
               
chr21:47464864-47465294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
72, 117
               

               
Conread position:
               
256-639
               

               
Cow position:
               
chr21:7824940-7825320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
62, 175
               

               
Conread position:
               
256-668
               

               
Cow position:
               
chr21:15444832-15445252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
257-662
               

               
Cow position:
               
chr21:28244716-28244309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
57, 98
               

               
Conread position:
               
257-666
               

               
Cow position:
               
chr21:20160927-20160512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 19
               

               
Conread position:
               
257-666
               

               
Cow position:
               
chr21:22861241-22860830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 58
               

               
Conread position:
               
257-666
               

               
Cow position:
               
chr21:27229554-27229966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 60
               

               
Conread position:
               
257-668
               

               
Cow position:
               
chr21:17193499-17193933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
56, 102
               

               
Conread position:
               
257-668
               

               
Cow position:
               
chr21:23587121-23586703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
145, 58
               

               
Conread position:
               
257-669
               

               
Cow position:
               
chr21:29069074-29069503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
273-665
               

               
Cow position:
               
chr21:42135386-42135794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
273-667
               

               
Cow position:
               
chr21:24598879-24598489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 37
               

               
Conread position:
               
273-668
               

               
Cow position:
               
chr21:643556-643160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 94
               

               
Conread position:
               
274-667
               

               
Cow position:
               
chr21:31691706-31691306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
275-571
               

               
Cow position:
               
chr21:16570125-16569825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
275-666
               

               
Cow position:
               
chr21:82295-81899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
278-668
               

               
Cow position:
               
chr21:8549910-8549504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
282-629
               

               
Cow position:
               
chr21:29978540-29978897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
33, 82
               

               
Conread position:
               
282-666
               

               
Cow position:
               
chr21:33791164-33791539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
66, 48
               

               
Conread position:
               
282-668
               

               
Cow position:
               
chr21:9416474-9416069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
311-660
               

               
Cow position:
               
chr21:12801559-12801912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
311-665
               

               
Cow position:
               
chr21:396057-395705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
91, 42
               

               
Conread position:
               
316-649
               

               
Cow position:
               
chr21:26245099-26244777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
84, 37
               

               
Conread position:
               
316-661
               

               
Cow position:
               
chr21:10001260-10000914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
79, 47
               

               
Conread position:
               
316-666
               

               
Cow position:
               
chr21:44515457-44515103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 221
               

               
Conread position:
               
317-650
               

               
Cow position:
               
chr21:44825702-44826039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
317-660
               

               
Cow position:
               
chr21:10264216-10263875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
317-660
               

               
Cow position:
               
chr21:23321894-23322249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
85, 46
               

               
Conread position:
               
317-664
               

               
Cow position:
               
chr21:5392351-5392712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
317-666
               

               
Cow position:
               
chr21:29485162-29484812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 46
               

               
Conread position:
               
317-667
               

               
Cow position:
               
chr21:9990694-9990343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
89, 36
               

               
Conread position:
               
317-668
               

               
Cow position:
               
chr21:33350925-33350569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
318-597
               

               
Cow position:
               
chr21:22465373-22465095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
86, 42
               

               
Conread position:
               
318-650
               

               
Cow position:
               
chr21:10633458-10633796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
154, 44
               

               
Conread position:
               
318-660
               

               
Cow position:
               
chr21:27568990-27569326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
140, 35
               

               
Conread position:
               
318-665
               

               
Cow position:
               
chr21:48250865-48251200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
5, 37
               

               
Conread position:
               
318-666
               

               
Cow position:
               
chr21:7581722-7582081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
82, 45
               

               
Conread position:
               
319-605
               

               
Cow position:
               
chr21:23980000-23980292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
319-627
               

               
Cow position:
               
chr21:14452416-14452105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
319-665
               

               
Cow position:
               
chr21:4904785-4905142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 36
               

               
Conread position:
               
319-668
               

               
Cow position:
               
chr21:33901-33549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
79, 44
               

               
Conread position:
               
319-668
               

               
Cow position:
               
chr21:28191214-28190855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
83, 44
               

               
Conread position:
               
320-668
               

               
Cow position:
               
chr21:36795784-36795430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
322-570
               

               
Cow position:
               
chr21:4280496-4280747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
322-641
               

               
Cow position:
               
chr21:10004707-10005032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
322-650
               

               
Cow position:
               
chr21:25764814-25764479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
322-667
               

               
Cow position:
               
chr21:21169317-21169667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
322-667
               

               
Cow position:
               
chr21:24858494-24858139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 45
               

               
Conread position:
               
323-666
               

               
Cow position:
               
chr21:41597989-41597644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
323-668
               

               
Cow position:
               
chr21:46264348-46264003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
83, 40
               

               
Conread position:
               
327-572
               

               
Cow position:
               
chr21:45262636-45262889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
327-586
               

               
Cow position:
               
chr21:31090261-31090511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 26
               

               
Conread position:
               
327-648
               

               
Cow position:
               
chr21:27624872-27624559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 36
               

               
Conread position:
               
327-650
               

               
Cow position:
               
chr21:32297345-32297666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
327-660
               

               
Cow position:
               
chr21:13127925-13128259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
327-665
               

               
Cow position:
               
chr21:38692370-38692019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 34
               

               
Conread position:
               
327-666
               

               
Cow position:
               
chr21:30990113-30990440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
327-666
               

               
Cow position:
               
chr21:36297667-36297307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
327-667
               

               
Cow position:
               
chr21:13365516-13365172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
327-667
               

               
Cow position:
               
chr21:33264019-33263677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 27
               

               
Conread position:
               
327-667
               

               
Cow position:
               
chr21:45473584-45473929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
327-668
               

               
Cow position:
               
chr21:33563177-33562842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
143, 26
               

               
Conread position:
               
327-668
               

               
Cow position:
               
chr21:41974204-41974552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
327-668
               

               
Cow position:
               
chr21:44671918-44671580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
327-668
               

               
Cow position:
               
chr21:47763944-47764285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
328-665
               

               
Cow position:
               
chr21:724706-725062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
329-668
               

               
Cow position:
               
chr21:15911572-15911227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
20, 34
               

               
Conread position:
               
329-668
               

               
Cow position:
               
chr21:38121273-38120934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
330-588
               

               
Cow position:
               
chr21:45906452-45906714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 22
               

               
Conread position:
               
330-666
               

               
Cow position:
               
chr21:29001986-29002333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 26
               

               
Conread position:
               
330-667
               

               
Cow position:
               
chr21:37299633-37299295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
331-595
               

               
Cow position:
               
chr21:30250035-30250290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
331-610
               

               
Cow position:
               
chr21:35354703-35354419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
332-629
               

               
Cow position:
               
chr21:12723320-12723022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
143, 17
               

               
Conread position:
               
332-638
               

               
Cow position:
               
chr21:28924278-28923974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
332-661
               

               
Cow position:
               
chr21:42841428-42841759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
333-668
               

               
Cow position:
               
chr21:28626405-28626068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
69, 30
               

               
Conread position:
               
333-670
               

               
Cow position:
               
chr21:36643069-36642732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
138, 90
               

               
Conread position:
               
334-667
               

               
Cow position:
               
chr21:33210355-33210026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
336-666
               

               
Cow position:
               
chr21:19258983-19258655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
130, 27
               

               
Conread position:
               
340-629
               

               
Cow position:
               
chr21:20418521-20418824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
59, 13
               

               
Conread position:
               
359-666
               

               
Cow position:
               
chr21:10007496-10007812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 82
               

               
Conread position:
               
362-629
               

               
Cow position:
               
chr21:17875053-17875330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
362-666
               

               
Cow position:
               
chr21:3498633-3498327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
362-666
               

               
Cow position:
               
chr21:13048053-13048368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 185
               

               
Conread position:
               
362-666
               

               
Cow position:
               
chr21:41198259-41198582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
362-668
               

               
Cow position:
               
chr21:40899479-40899164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
40, 79
               

               
Conread position:
               
363-593
               

               
Cow position:
               
chr21:10561444-10561682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
363-629
               

               
Cow position:
               
chr21:20260180-20260455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
363-650
               

               
Cow position:
               
chr21:15611279-15610996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 37
               

               
Conread position:
               
363-650
               

               
Cow position:
               
chr21:18800395-18800684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
39, 130
               

               
Conread position:
               
363-656
               

               
Cow position:
               
chr21:28617723-28617429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
93, 35
               

               
Conread position:
               
363-662
               

               
Cow position:
               
chr21:3818348-3818049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 241
               

               
Conread position:
               
363-666
               

               
Cow position:
               
chr21:18828163-18828481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
41, 187
               

               
Conread position:
               
363-666
               

               
Cow position:
               
chr21:42348556-42348849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
239, 25
               

               
Conread position:
               
363-668
               

               
Cow position:
               
chr21:18842098-18842411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
39, 152
               

               
Conread position:
               
363-668
               

               
Cow position:
               
chr21:30606947-30607261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 227
               

               
Conread position:
               
363-668
               

               
Cow position:
               
chr21:34390836-34391143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
363-669
               

               
Cow position:
               
chr21:5153760-5153443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 116
               

               
Conread position:
               
363-669
               

               
Cow position:
               
chr21:13738692-13738394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 42
               

               
Conread position:
               
364-642
               

               
Cow position:
               
chr21:44962935-44962647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 162
               

               
Conread position:
               
364-665
               

               
Cow position:
               
chr21:47066763-47067059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
105, 49
               

               
Conread position:
               
364-666
               

               
Cow position:
               
chr21:42540084-42540391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
40, 142
               

               
Conread position:
               
365-558
               

               
Cow position:
               
chr21:297891-297689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
37, 160
               

               
Conread position:
               
365-668
               

               
Cow position:
               
chr21:23822292-23821995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
37, 103
               

               
Conread position:
               
365-668
               

               
Cow position:
               
chr21:45330470-45330781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
28, 46
               

               
Conread position:
               
371-668
               

               
Cow position:
               
chr21:4099000-4098702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
372-603
               

               
Cow position:
               
chr21:10673251-10673023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
34, 111
               

               
Conread position:
               
372-641
               

               
Cow position:
               
chr21:16187677-16187952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
372-648
               

               
Cow position:
               
chr21:41579886-41579594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
372-661
               

               
Cow position:
               
chr21:46859992-46860268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
372-666
               

               
Cow position:
               
chr21:8235432-8235716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 33
               

               
Conread position:
               
372-667
               

               
Cow position:
               
chr21:18289793-18289490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 169
               

               
Conread position:
               
372-668
               

               
Cow position:
               
chr21:13488657-13488346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 216
               

               
Conread position:
               
372-668
               

               
Cow position:
               
chr21:19766984-19766681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
31, 166
               

               
Conread position:
               
372-668
               

               
Cow position:
               
chr21:42384638-42384332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
373-615
               

               
Cow position:
               
chr21:36789924-36789673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
29, 160
               

               
Conread position:
               
373-649
               

               
Cow position:
               
chr21:24642649-24642364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 108
               

               
Conread position:
               
374-623
               

               
Cow position:
               
chr21:20193022-20192774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
98, 31
               

               
Conread position:
               
374-664
               

               
Cow position:
               
chr21:24888127-24887839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
28, 96
               

               
Conread position:
               
374-665
               

               
Cow position:
               
chr21:15976761-15976470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
29, 156
               

               
Conread position:
               
374-666
               

               
Cow position:
               
chr21:28442860-28442573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
374-667
               

               
Cow position:
               
chr21:27145864-27146164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
375-666
               

               
Cow position:
               
chr21:24131196-24130909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 78
               

               
Conread position:
               
376-629
               

               
Cow position:
               
chr21:17856670-17856409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
24, 168
               

               
Conread position:
               
378-666
               

               
Cow position:
               
chr21:2367456-2367169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
24, 215
               

               
Conread position:
               
380-667
               

               
Cow position:
               
chr21:48107753-48108036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
13, 50
               

               
Conread position:
               
393-668
               

               
Cow position:
               
chr21:2679666-2679379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
9, 109
               

               
Conread position:
               
401-594
               

               
Cow position:
               
chr21:2904379-2904572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
55, 50
               

               
Conread position:
               
407-668
               

               
Cow position:
               
chr21:20262242-20262506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
43, 120
               

               
Conread position:
               
410-668
               

               
Cow position:
               
chr21:19363369-19363637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
46, 177
               

               
Conread position:
               
410-668
               

               
Cow position:
               
chr21:23192422-23192691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
412-629
               

               
Cow position:
               
chr21:13754876-13754664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
412-665
               

               
Cow position:
               
chr21:10601287-10601539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
44, 101
               

               
Conread position:
               
413-650
               

               
Cow position:
               
chr21:12960810-12961058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
413-666
               

               
Cow position:
               
chr21:24765369-24765112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
138, 23
               

               
Conread position:
               
413-668
               

               
Cow position:
               
chr21:18790475-18790729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
415-650
               

               
Cow position:
               
chr21:4795311-4795070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
54, 46
               

               
Conread position:
               
415-650
               

               
Cow position:
               
chr21:17175232-17174989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
415-664
               

               
Cow position:
               
chr21:11640107-11639851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 216
               

               
Conread position:
               
415-668
               

               
Cow position:
               
chr21:18941749-18942002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
415-668
               

               
Cow position:
               
chr21:39888664-39888917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 181
               

               
Conread position:
               
420-649
               

               
Cow position:
               
chr21:6909802-6910038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
420-665
               

               
Cow position:
               
chr21:7132398-7132633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
184, 32
               

               
Conread position:
               
420-668
               

               
Cow position:
               
chr21:16696447-16696197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
41, 227
               

               
Conread position:
               
421-641
               

               
Cow position:
               
chr21:18041768-18041989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
45, 185
               

               
Conread position:
               
421-666
               

               
Cow position:
               
chr21:21077405-21077159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
51, 64
               

               
Conread position:
               
422-668
               

               
Cow position:
               
chr21:28429519-28429276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 123
               

               
Conread position:
               
423-664
               

               
Cow position:
               
chr21:13409752-13409992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
424-623
               

               
Cow position:
               
chr21:35569308-35569505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 111
               

               
Conread position:
               
424-666
               

               
Cow position:
               
chr21:8351235-8351475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
59, 112
               

               
Conread position:
               
424-667
               

               
Cow position:
               
chr21:16612701-16612457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
46, 104
               

               
Conread position:
               
424-668
               

               
Cow position:
               
chr21:41957110-41957347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
424-668
               

               
Cow position:
               
chr21:45355909-45355663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
425-633
               

               
Cow position:
               
chr21:11360111-11359899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
46, 76
               

               
Conread position:
               
427-668
               

               
Cow position:
               
chr21:9710641-9710877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 8
               

               
Conread position:
               
428-656
               

               
Cow position:
               
chr21:39401667-39401433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
428-660
               

               
Cow position:
               
chr21:21480112-21480348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
430-666
               

               
Cow position:
               
chr21:31676561-31676327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 5
               

               
Conread position:
               
431-668
               

               
Cow position:
               
chr21:42053208-42053438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
431-668
               

               
Cow position:
               
chr21:42459475-42459720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
434-668
               

               
Cow position:
               
chr21:33727403-33727634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 123
               

               
Conread position:
               
435-666
               

               
Cow position:
               
chr21:45850657-45850882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
436-648
               

               
Cow position:
               
chr21:5137423-5137643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 61
               

               
Conread position:
               
436-668
               

               
Cow position:
               
chr21:49662065-49662290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
437-666
               

               
Cow position:
               
chr21:6764637-6764873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 195
               

               
Conread position:
               
438-670
               

               
Cow position:
               
chr21:7564263-7564497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
108, 19
               

               
Conread position:
               
439-667
               

               
Cow position:
               
chr21:44754723-44754949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
163, 77
               

               
Conread position:
               
440-666
               

               
Cow position:
               
chr21:23149968-23150191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
440-668
               

               
Cow position:
               
chr21:9873012-9872794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
440-668
               

               
Cow position:
               
chr21:18844960-18845188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
169, 196
               

               
Conread position:
               
440-670
               

               
Cow position:
               
chr21:19615234-19614998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
441-668
               

               
Cow position:
               
chr21:47495600-47495830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
442-666
               

               
Cow position:
               
chr21:42905326-42905549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 10
               

               
Conread position:
               
445-666
               

               
Cow position:
               
chr21:8289589-8289812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
445-666
               

               
Cow position:
               
chr21:8985593-8985378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
106, 12
               

               
Conread position:
               
445-667
               

               
Cow position:
               
chr21:37361424-37361640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
24, 134
               

               
Conread position:
               
445-672
               

               
Cow position:
               
chr21:19936879-19937110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 86
               

               
Conread position:
               
446-615
               

               
Cow position:
               
chr21:14515901-14515730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 162
               

               
Conread position:
               
447-666
               

               
Cow position:
               
chr21:42414055-42414274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
447-668
               

               
Cow position:
               
chr21:18850183-18850392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
447-668
               

               
Cow position:
               
chr21:27124079-27124300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 9
               

               
Conread position:
               
447-668
               

               
Cow position:
               
chr21:34565164-34565386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
153, 74
               

               
Conread position:
               
447-668
               

               
Cow position:
               
chr21:47729978-47730192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 10
               

               
Conread position:
               
447-668
               

               
Cow position:
               
chr21:47802216-47802433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
448-663
               

               
Cow position:
               
chr21:5344704-5344487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
103, 9
               

               
Conread position:
               
448-668
               

               
Cow position:
               
chr21:2927156-2927376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
95, 14
               

               
Conread position:
               
448-669
               

               
Cow position:
               
chr21:394066-393847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
8, 26
               

               
Conread position:
               
449-664
               

               
Cow position:
               
chr21:5426019-5425811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
449-666
               

               
Cow position:
               
chr21:10967277-10967062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
101, 31
               

               
Conread position:
               
449-666
               

               
Cow position:
               
chr21:46242192-46242411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
449-667
               

               
Cow position:
               
chr21:28944320-28944536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
449-668
               

               
Cow position:
               
chr21:29943049-29942834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
26, 96
               

               
Conread position:
               
450-666
               

               
Cow position:
               
chr21:5597197-5596975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
15, 92
               

               
Conread position:
               
450-672
               

               
Cow position:
               
chr21:712973-712756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 103
               

               
Conread position:
               
452-598
               

               
Cow position:
               
chr21:9940148-9940298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
452-616
               

               
Cow position:
               
chr21:4568327-4568164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
452-632
               

               
Cow position:
               
chr21:39809936-39809762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
452-659
               

               
Cow position:
               
chr21:34739886-34739682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
452-663
               

               
Cow position:
               
chr21:9028668-9028452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
452-666
               

               
Cow position:
               
chr21:23801085-23801293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
452-666
               

               
Cow position:
               
chr21:45375665-45375444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
132, 94
               

               
Conread position:
               
453-665
               

               
Cow position:
               
chr21:4189880-4189664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
453-667
               

               
Cow position:
               
chr21:3360970-3361187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 40
               

               
Conread position:
               
454-650
               

               
Cow position:
               
chr21:4998446-4998642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
112, 21
               

               
Conread position:
               
454-666
               

               
Cow position:
               
chr21:47215140-47215352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
155, 127
               

               
Conread position:
               
454-668
               

               
Cow position:
               
chr21:17511816-17511603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 18
               

               
Conread position:
               
456-625
               

               
Cow position:
               
chr21:22353190-22353365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
457-648
               

               
Cow position:
               
chr21:45921020-45921212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
457-650
               

               
Cow position:
               
chr21:13840363-13840167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
457-660
               

               
Cow position:
               
chr21:33997191-33997387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
457-665
               

               
Cow position:
               
chr21:3236559-3236360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
457-666
               

               
Cow position:
               
chr21:12617175-12616968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
457-666
               

               
Cow position:
               
chr21:32536012-32535805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
457-667
               

               
Cow position:
               
chr21:30150228-30150438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
84, 23
               

               
Conread position:
               
457-668
               

               
Cow position:
               
chr21:3813446-3813656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
94, 49
               

               
Conread position:
               
457-668
               

               
Cow position:
               
chr21:10608414-10608629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
457-668
               

               
Cow position:
               
chr21:27743786-27743569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 38
               

               
Conread position:
               
457-668
               

               
Cow position:
               
chr21:31662503-31662287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
457-668
               

               
Cow position:
               
chr21:40058844-40058633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
22, 195
               

               
Conread position:
               
458-657
               

               
Cow position:
               
chr21:36793929-36793730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
41, 36
               

               
Conread position:
               
458-666
               

               
Cow position:
               
chr21:10151834-10151623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 15
               

               
Conread position:
               
458-666
               

               
Cow position:
               
chr21:10727315-10727109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 124
               

               
Conread position:
               
458-666
               

               
Cow position:
               
chr21:22194077-22194282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
90, 16
               

               
Conread position:
               
458-667
               

               
Cow position:
               
chr21:23984244-23984456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
72, 48
               

               
Conread position:
               
458-667
               

               
Cow position:
               
chr21:37345061-37345273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
458-669
               

               
Cow position:
               
chr21:1464268-1464054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
459-597
               

               
Cow position:
               
chr21:8206804-8206670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
459-625
               

               
Cow position:
               
chr21:17428533-17428368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 21
               

               
Conread position:
               
459-660
               

               
Cow position:
               
chr21:13898221-13898023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
93, 138
               

               
Conread position:
               
459-666
               

               
Cow position:
               
chr21:1059113-1058905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
86, 14
               

               
Conread position:
               
459-666
               

               
Cow position:
               
chr21:34010362-34010562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
459-666
               

               
Cow position:
               
chr21:42024157-42023953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
459-668
               

               
Cow position:
               
chr21:3381047-3381254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
91, 121
               

               
Conread position:
               
459-668
               

               
Cow position:
               
chr21:5636682-5636894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
459-668
               

               
Cow position:
               
chr21:28882171-28881969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
90, 106
               

               
Conread position:
               
459-668
               

               
Cow position:
               
chr21:28993585-28993799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
459-669
               

               
Cow position:
               
chr21:41878509-41878302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
10, 131
               

               
Conread position:
               
460-634
               

               
Cow position:
               
chr21:19411981-19412158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 19
               

               
Conread position:
               
460-668
               

               
Cow position:
               
chr21:42913710-42913919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
138, 87
               

               
Conread position:
               
461-665
               

               
Cow position:
               
chr21:28443342-28443548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
139, 29
               

               
Conread position:
               
462-664
               

               
Cow position:
               
chr21:2785744-2785949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
462-666
               

               
Cow position:
               
chr21:21216111-21216313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
200, 10
               

               
Conread position:
               
462-668
               

               
Cow position:
               
chr21:911934-912140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
462-668
               

               
Cow position:
               
chr21:28997867-28998079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 163
               

               
Conread position:
               
463-611
               

               
Cow position:
               
chr21:18415083-18414934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
463-660
               

               
Cow position:
               
chr21:48484415-48484609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
82, 120
               

               
Conread position:
               
464-629
               

               
Cow position:
               
chr21:31511317-31511155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
468-650
               

               
Cow position:
               
chr21:1591578-1591393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
105, 12
               

               
Conread position:
               
468-664
               

               
Cow position:
               
chr21:43357232-43357430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
83, 22
               

               
Conread position:
               
468-666
               

               
Cow position:
               
chr21:18494995-18494794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
130, 5
               

               
Conread position:
               
468-667
               

               
Cow position:
               
chr21:34659061-34658862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
83, 108
               

               
Conread position:
               
468-667
               

               
Cow position:
               
chr21:42145940-42145745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
124, 49
               

               
Conread position:
               
468-668
               

               
Cow position:
               
chr21:40589458-40589656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
136, 70
               

               
Conread position:
               
469-627
               

               
Cow position:
               
chr21:37886437-37886278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
6, 57
               

               
Conread position:
               
469-666
               

               
Cow position:
               
chr21:29979732-29979927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
79, 25
               

               
Conread position:
               
470-666
               

               
Cow position:
               
chr21:8618302-8618103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
471-668
               

               
Cow position:
               
chr21:32237319-32237124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
80, 103
               

               
Conread position:
               
471-669
               

               
Cow position:
               
chr21:42463810-42464018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
44, 58
               

               
Conread position:
               
474-666
               

               
Cow position:
               
chr21:40244461-40244263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
474-667
               

               
Cow position:
               
chr21:33729451-33729262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
475-667
               

               
Cow position:
               
chr21:35997194-35997001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
475-668
               

               
Cow position:
               
chr21:23478697-23478892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
60, 176
               

               
Conread position:
               
480-620
               

               
Cow position:
               
chr21:949660-949794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
480-668
               

               
Cow position:
               
chr21:7716770-7716964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
68, 13
               

               
Conread position:
               
480-668
               

               
Cow position:
               
chr21:28512544-28512359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
481-666
               

               
Cow position:
               
chr21:4080373-4080183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
45, 51
               

               
Conread position:
               
483-661
               

               
Cow position:
               
chr21:44114124-44114295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
483-666
               

               
Cow position:
               
chr21:23683560-23683379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
484-666
               

               
Cow position:
               
chr21:11706734-11706923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
484-666
               

               
Cow position:
               
chr21:36162949-36163134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
492-667
               

               
Cow position:
               
chr21:46829266-46829440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 96
               

               
Conread position:
               
501-660
               

               
Cow position:
               
chr21:13163885-13163725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
50, 81
               

               
Conread position:
               
501-665
               

               
Cow position:
               
chr21:9998723-9998891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
501-665
               

               
Cow position:
               
chr21:20925512-20925677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
501-666
               

               
Cow position:
               
chr21:4276596-4276762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
501-666
               

               
Cow position:
               
chr21:24607385-24607214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
501-666
               

               
Cow position:
               
chr21:39403542-39403710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
501-667
               

               
Cow position:
               
chr21:28989608-28989443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
96, 153
               

               
Conread position:
               
501-667
               

               
Cow position:
               
chr21:34159957-34159787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
53, 120
               

               
Conread position:
               
502-666
               

               
Cow position:
               
chr21:49700041-49700207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
502-668
               

               
Cow position:
               
chr21:28599769-28599598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 13
               

               
Conread position:
               
504-667
               

               
Cow position:
               
chr21:26648012-26648178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
41, 135
               

               
Conread position:
               
504-668
               

               
Cow position:
               
chr21:17642972-17643143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 158
               

               
Conread position:
               
507-669
               

               
Cow position:
               
chr21:35062078-35061914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
37, 18
               

               
Conread position:
               
507-670
               

               
Cow position:
               
chr21:13395542-13395381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
26, 98
               

               
Conread position:
               
508-666
               

               
Cow position:
               
chr21:21223280-21223118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
508-666
               

               
Cow position:
               
chr21:42465820-42465658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
508-668
               

               
Cow position:
               
chr21:31159250-31159083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
508-668
               

               
Cow position:
               
chr21:35897645-35897799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
509-667
               

               
Cow position:
               
chr21:44220209-44220048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
7, 157
               

               
Conread position:
               
513-653
               

               
Cow position:
               
chr21:14126030-14125887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
87, 65
               

               
Conread position:
               
515-650
               

               
Cow position:
               
chr21:43631219-43631358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
517-666
               

               
Cow position:
               
chr21:28029379-28029226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
523-668
               

               
Cow position:
               
chr21:35897454-35897309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
527-668
               

               
Cow position:
               
chr21:13256773-13256631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
528-666
               

               
Cow position:
               
chr21:1511036-1510902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
531-666
               

               
Cow position:
               
chr21:20162502-20162364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 103
               

               
Conread position:
               
531-666
               

               
Cow position:
               
chr21:28907683-28907815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
534-668
               

               
Cow position:
               
chr21:17282666-17282530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
536-666
               

               
Cow position:
               
chr21:46132019-46132149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
547-668
               

               
Cow position:
               
chr21:31278726-31278606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
548-668
               

               
Cow position:
               
chr21:34738546-34738425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 0
               
Show alignments to all cow chromosomes.