Cow genome map

Conread name: Ss1.1-Thy1-THY010203D03.5

Conread position: 230-448
Cow position: chr27:30872140-30871922 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 72, 41

Conread position: 244-424
Cow position: chr27:20045822-20046000 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 120, 56

Conread position: 244-424
Cow position: chr27:30672626-30672449 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 118, 50

Conread position: 244-448
Cow position: chr27:10992285-10992491 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 124

Conread position: 268-422
Cow position: chr27:24999783-24999626 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 9

Conread position: 269-411
Cow position: chr27:26135094-26135238 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 114

Conread position: 269-419
Cow position: chr27:29380810-29380967 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 142

Conread position: 269-422
Cow position: chr27:24371197-24371347 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 33

Conread position: 269-424
Cow position: chr27:6350883-6350715 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 69

Conread position: 269-424
Cow position: chr27:12516150-12516309 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 54

Conread position: 269-424
Cow position: chr27:20354547-20354695 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 93, 29

Conread position: 269-424
Cow position: chr27:22418813-22418654 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 113

Conread position: 269-424
Cow position: chr27:23070402-23070249 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 110

Conread position: 269-424
Cow position: chr27:26441099-26440946 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 102, 11

Conread position: 269-424
Cow position: chr27:30359364-30359518 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 60

Conread position: 269-429
Cow position: chr27:6058461-6058618 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 94, 31

Conread position: 269-429
Cow position: chr27:6523001-6523160 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 25

Conread position: 269-429
Cow position: chr27:19647986-19647820 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 27, 117

Conread position: 269-429
Cow position: chr27:25379947-25380110 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 113

Conread position: 269-429
Cow position: chr27:26428175-26428013 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 27, 45

Conread position: 269-429
Cow position: chr27:26807603-26807444 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 93, 29

Conread position: 269-429
Cow position: chr27:28931839-28931672 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 25, 112

Conread position: 269-431
Cow position: chr27:12596728-12596886 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 95, 19

Conread position: 269-438
Cow position: chr27:8168473-8168302 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 11, 7

Conread position: 269-438
Cow position: chr27:10979820-10979987 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 38, 93

Conread position: 269-438
Cow position: chr27:13875685-13875858 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 29, 113

Conread position: 269-438
Cow position: chr27:14902696-14902525 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 110

Conread position: 269-438
Cow position: chr27:15643130-15643299 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 93, 31

Conread position: 269-438
Cow position: chr27:23882417-23882250 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 106, 29

Conread position: 269-438
Cow position: chr27:24227837-24227666 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 62

Conread position: 269-438
Cow position: chr27:27259571-27259736 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 94, 24

Conread position: 269-438
Cow position: chr27:27844041-27843869 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 99

Conread position: 269-438
Cow position: chr27:28921937-28921773 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 269-438
Cow position: chr27:30868783-30868615 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 96

Conread position: 269-439
Cow position: chr27:22330716-22330540 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 125

Conread position: 269-442
Cow position: chr27:1353540-1353723 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 269-445
Cow position: chr27:4011636-4011814 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 91, 35

Conread position: 269-447
Cow position: chr27:23554372-23554183 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 93, 0

Conread position: 269-448
Cow position: chr27:6550416-6550588 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 25

Conread position: 269-448
Cow position: chr27:23890895-23891075 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 145

Conread position: 269-448
Cow position: chr27:27040559-27040745 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 170

Conread position: 269-448
Cow position: chr27:28518255-28518429 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 157, 29

Conread position: 269-450
Cow position: chr27:30354387-30354204 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 115

Conread position: 269-454
Cow position: chr27:25790761-25790947 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 94, 119

Conread position: 269-459
Cow position: chr27:21569883-21569695 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 93, 35

Conread position: 269-474
Cow position: chr27:1498272-1498481 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 115

Conread position: 269-474
Cow position: chr27:2592500-2592709 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 115

Conread position: 269-475
Cow position: chr27:2683188-2682979 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 156

Conread position: 269-480
Cow position: chr27:11435365-11435155 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 113

Conread position: 270-424
Cow position: chr27:22440100-22440251 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 270-429
Cow position: chr27:30844120-30843956 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 122

Conread position: 270-429
Cow position: chr27:30988755-30988913 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 92, 118

Conread position: 270-438
Cow position: chr27:9169688-9169517 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 29, 110

Conread position: 270-438
Cow position: chr27:11536147-11535973 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 168

Conread position: 271-424
Cow position: chr27:6500020-6500175 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 92, 40

Conread position: 271-424
Cow position: chr27:29816661-29816511 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 32, 94

Conread position: 271-428
Cow position: chr27:20570079-20570240 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 90, 108

Conread position: 271-435
Cow position: chr27:11416407-11416573 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 63

Conread position: 272-429
Cow position: chr27:29283449-29283289 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 107

Conread position: 273-424
Cow position: chr27:30914970-30915120 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 21

Conread position: 273-438
Cow position: chr27:9090839-9090678 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 99, 24

Conread position: 273-438
Cow position: chr27:18593230-18593394 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 104

Conread position: 273-448
Cow position: chr27:27438544-27438367 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 28

Conread position: 277-429
Cow position: chr27:22268466-22268620 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 128
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 21, 102

Conread position: 277-448
Cow position: chr27:27550776-27550610 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 85, 99

Conread position: 279-438
Cow position: chr27:17472775-17472940 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 159

Conread position: 279-480
Cow position: chr27:25277107-25277310 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 50

Conread position: 280-448
Cow position: chr27:20591947-20592121 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 158

Conread position: 284-448
Cow position: chr27:13251981-13252147 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 37

Conread position: 289-426
Cow position: chr27:715481-715619 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 75, 30

Conread position: 289-438
Cow position: chr27:12429384-12429530 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 73, 10

Conread position: 290-422
Cow position: chr27:30765015-30765150 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 290-424
Cow position: chr27:27641023-27640881 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 290-450
Cow position: chr27:18948616-18948451 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 81, 14

Conread position: 290-450
Cow position: chr27:29399794-29399957 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 88

Conread position: 292-429
Cow position: chr27:18434489-18434356 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 294-438
Cow position: chr27:13197903-13198040 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 68

Conread position: 300-429
Cow position: chr27:23455166-23455031 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 302-451
Cow position: chr27:11815766-11815619 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 9

Conread position: 303-448
Cow position: chr27:14343474-14343330 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 59, 75

Conread position: 305-438
Cow position: chr27:13639000-13638865 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 129

Conread position: 305-438
Cow position: chr27:18031071-18030933 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 30, 132

Conread position: 467-692
Cow position: chr27:9121997-9121769 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 153
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 56, 125

Conread position: 471-695
Cow position: chr27:6617762-6617988 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 147
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 476-692
Cow position: chr27:3531443-3531227 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 18

Conread position: 477-694
Cow position: chr27:18527980-18527758 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 190

Conread position: 480-695
Cow position: chr27:3495649-3495868 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 100

Conread position: 481-675
Cow position: chr27:17049535-17049337 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 45, 181

Conread position: 484-705
Cow position: chr27:14870208-14870436 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 488-705
Cow position: chr27:4077858-4077636 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 75

Conread position: 493-690
Cow position: chr27:10855138-10855335 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 138
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 38, 69

Conread position: 528-678
Cow position: chr27:7483216-7483363 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 535-706
Cow position: chr27:23157687-23157523 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 129, 75

Conread position: 548-729
Cow position: chr27:21279907-21279730 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 145, 112

Conread position: 551-701
Cow position: chr27:23680416-23680272 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 552-711
Cow position: chr27:21705143-21705300 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 139, 23

Conread position: 555-709
Cow position: chr27:9485051-9485206 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 138, 0

Show alignments to all cow chromosomes.