Cow genome map

Conread name: Ss1.1-Thy1-THY010205G02.5

Conread position: 65-407
Cow position: chr15:1670442-1670787 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 237
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 33, 71

Conread position: 73-283
Cow position: chr15:17124724-17124939 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 61, 33

Conread position: 73-371
Cow position: chr15:39894901-39894592 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 127

Conread position: 73-404
Cow position: chr15:40065377-40065718 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 156

Conread position: 102-407
Cow position: chr15:4623748-4623454 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 193, 27

Conread position: 105-267
Cow position: chr15:13387352-13387188 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 72, 24

Conread position: 105-285
Cow position: chr15:27282074-27281892 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 74, 24

Conread position: 105-318
Cow position: chr15:17213721-17213511 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 82, 24

Conread position: 105-327
Cow position: chr15:19192674-19192889 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 68, 25

Conread position: 105-363
Cow position: chr15:24285254-24284994 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 74, 24

Conread position: 105-406
Cow position: chr15:52462987-52462674 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 233
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 74, 22

Conread position: 108-253
Cow position: chr15:7827765-7827913 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 36, 94

Conread position: 108-268
Cow position: chr15:40009375-40009540 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 97

Conread position: 108-293
Cow position: chr15:11362907-11363090 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 71, 93

Conread position: 108-343
Cow position: chr15:2210848-2210609 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 119

Conread position: 109-294
Cow position: chr15:23957977-23957785 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 109-299
Cow position: chr15:53118596-53118398 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 90

Conread position: 109-300
Cow position: chr15:22886823-22886624 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 75

Conread position: 109-354
Cow position: chr15:21836963-21836706 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 90

Conread position: 109-379
Cow position: chr15:24411679-24411419 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 245, 16

Conread position: 109-380
Cow position: chr15:18715504-18715235 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 88

Conread position: 109-388
Cow position: chr15:9177939-9178213 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 185
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 69

Conread position: 109-389
Cow position: chr15:8630011-8630288 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 73

Conread position: 109-404
Cow position: chr15:9072155-9072472 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 226

Conread position: 109-404
Cow position: chr15:52868326-52868611 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 213
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 21, 73

Conread position: 109-406
Cow position: chr15:19781807-19781524 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 152, 28

Conread position: 109-406
Cow position: chr15:37985286-37985569 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 216
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 72

Conread position: 109-407
Cow position: chr15:21695899-21696190 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 208
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 74

Conread position: 109-407
Cow position: chr15:44797804-44797499 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 20, 155

Conread position: 110-300
Cow position: chr15:11646215-11646415 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 95

Conread position: 110-357
Cow position: chr15:26701803-26702054 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 153

Conread position: 110-358
Cow position: chr15:29032817-29033052 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 19, 75

Conread position: 110-358
Cow position: chr15:29205237-29205475 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 78

Conread position: 110-387
Cow position: chr15:28070763-28070489 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 17, 65

Conread position: 114-282
Cow position: chr15:43248502-43248674 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 148

Conread position: 114-293
Cow position: chr15:31934756-31934947 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 97

Conread position: 114-407
Cow position: chr15:21801901-21802198 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 105

Conread position: 116-267
Cow position: chr15:5730204-5730049 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 7

Conread position: 116-267
Cow position: chr15:42788883-42789039 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 15, 73

Conread position: 116-379
Cow position: chr15:50177368-50177107 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 180
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 127, 44

Conread position: 117-261
Cow position: chr15:21523048-21522903 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 63, 12

Conread position: 117-300
Cow position: chr15:37632619-37632807 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 60, 12

Conread position: 117-407
Cow position: chr15:3832412-3832132 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 199
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 85

Conread position: 117-570
Cow position: chr15:31918481-31918017 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 314
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 62, 12

Conread position: 121-315
Cow position: chr15:12655654-12655853 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 78

Conread position: 121-377
Cow position: chr15:10608047-10608306 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 80

Conread position: 122-559
Cow position: chr15:37470453-37470010 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 316
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 132, 53

Conread position: 123-267
Cow position: chr15:50302439-50302294 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 53, 76

Conread position: 123-300
Cow position: chr15:16657749-16657570 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 127
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 58, 76

Conread position: 123-305
Cow position: chr15:33770873-33770685 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 123-317
Cow position: chr15:36043375-36043172 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 123-385
Cow position: chr15:15215276-15215009 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 54, 247

Conread position: 123-410
Cow position: chr15:52204509-52204789 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 59, 92

Conread position: 123-482
Cow position: chr15:44252619-44252273 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 250
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 50, 90

Conread position: 123-483
Cow position: chr15:50322851-50322497 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 236
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 56, 77

Conread position: 127-254
Cow position: chr15:22532489-22532361 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 78

Conread position: 127-274
Cow position: chr15:11658317-11658465 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 52, 72

Conread position: 127-483
Cow position: chr15:12170494-12170150 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 237
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 46, 62

Conread position: 128-251
Cow position: chr15:29967938-29967818 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 60, 47

Conread position: 128-276
Cow position: chr15:12316175-12316029 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 128-318
Cow position: chr15:1830812-1830620 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 154

Conread position: 128-334
Cow position: chr15:27972562-27972352 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 169
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 188

Conread position: 128-363
Cow position: chr15:29272438-29272209 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 51, 10

Conread position: 128-366
Cow position: chr15:53045628-53045867 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 56, 70

Conread position: 128-406
Cow position: chr15:17150254-17150532 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 118

Conread position: 128-407
Cow position: chr15:10580906-10581187 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 51, 76

Conread position: 128-407
Cow position: chr15:11289316-11289042 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 49, 25

Conread position: 128-407
Cow position: chr15:23265300-23265569 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 0

Conread position: 128-407
Cow position: chr15:31655620-31655907 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 210
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 49, 191

Conread position: 128-433
Cow position: chr15:16946571-16946878 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 87

Conread position: 128-475
Cow position: chr15:26919027-26919373 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 217
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 157, 66

Conread position: 128-475
Cow position: chr15:27247762-27247420 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 238
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 169

Conread position: 128-489
Cow position: chr15:35041623-35041974 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 196

Conread position: 129-374
Cow position: chr15:1329853-1330100 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 71

Conread position: 129-404
Cow position: chr15:22713584-22713855 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 119, 48

Conread position: 130-294
Cow position: chr15:15707862-15708023 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 49, 69

Conread position: 130-363
Cow position: chr15:37964788-37964547 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 44, 194

Conread position: 130-387
Cow position: chr15:3572027-3571769 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 179
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 47, 78

Conread position: 130-388
Cow position: chr15:36278523-36278264 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 92, 67

Conread position: 130-421
Cow position: chr15:31616757-31617052 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 192
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 48

Conread position: 132-257
Cow position: chr15:44209814-44209687 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 125

Conread position: 132-389
Cow position: chr15:1758389-1758127 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 176
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 158

Conread position: 135-407
Cow position: chr15:43275053-43275320 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 76, 7

Conread position: 146-406
Cow position: chr15:5442159-5442414 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 103, 31

Conread position: 147-407
Cow position: chr15:42679953-42680213 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 92, 30

Conread position: 164-398
Cow position: chr15:1893132-1892898 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 127, 13

Conread position: 172-574
Cow position: chr15:5912876-5912482 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 89

Conread position: 178-314
Cow position: chr15:14758053-14758191 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 109

Conread position: 186-408
Cow position: chr15:53712397-53712624 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 33, 138

Conread position: 200-482
Cow position: chr15:50062646-50062929 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 191
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 55, 132

Conread position: 406-570
Cow position: chr15:11997543-11997714 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 89, 42

Conread position: 409-567
Cow position: chr15:40065749-40065907 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 43

Conread position: 425-574
Cow position: chr15:25683517-25683663 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 120, 29

Show alignments to all cow chromosomes.