Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 97-407 |
| Cow position: | chr17:20208973-20208667 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 80 |
| Conread position: | 101-282 |
| Cow position: | chr17:3781898-3782075 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 22 |
| Conread position: | 102-269 |
| Cow position: | chr17:16448189-16448358 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 103-281 |
| Cow position: | chr17:5997236-5997063 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 146, 26 |
| Conread position: | 105-267 |
| Cow position: | chr17:25755645-25755813 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 74, 22 |
| Conread position: | 105-278 |
| Cow position: | chr17:15363701-15363532 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 105-374 |
| Cow position: | chr17:41892207-41891934 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 106-571 |
| Cow position: | chr17:28847806-28847315 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 23 |
| Conread position: | 108-266 |
| Cow position: | chr17:38646919-38647076 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 91 |
| Conread position: | 108-267 |
| Cow position: | chr17:3503441-3503602 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 68, 96 |
| Conread position: | 108-317 |
| Cow position: | chr17:24761371-24761158 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 108-317 |
| Cow position: | chr17:30529682-30529475 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 65, 90 |
| Conread position: | 109-267 |
| Cow position: | chr17:11304893-11305052 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 71 |
| Conread position: | 109-267 |
| Cow position: | chr17:23803323-23803478 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 21 |
| Conread position: | 109-267 |
| Cow position: | chr17:37775977-37776138 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 109-299 |
| Cow position: | chr17:37778761-37778567 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 109-300 |
| Cow position: | chr17:27697841-27697644 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 96 |
| Conread position: | 109-319 |
| Cow position: | chr17:20216027-20216238 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 109-363 |
| Cow position: | chr17:8279853-8279591 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 109-406 |
| Cow position: | chr17:15985206-15985508 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 109-408 |
| Cow position: | chr17:11374835-11374536 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 110-265 |
| Cow position: | chr17:553096-552942 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 110-267 |
| Cow position: | chr17:28539890-28540048 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 70, 87 |
| Conread position: | 110-363 |
| Cow position: | chr17:26084891-26085141 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 165 |
| Conread position: | 111-271 |
| Cow position: | chr17:35990955-35991118 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 21, 143 |
| Conread position: | 111-379 |
| Cow position: | chr17:30204514-30204792 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 20, 202 |
| Conread position: | 116-313 |
| Cow position: | chr17:12059228-12059026 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 81 |
| Conread position: | 116-328 |
| Cow position: | chr17:21959820-21959610 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 81 |
| Conread position: | 123-294 |
| Cow position: | chr17:12536594-12536426 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 123-300 |
| Cow position: | chr17:13672196-13672019 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 65 |
| Conread position: | 123-300 |
| Cow position: | chr17:33999170-33998998 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 123-305 |
| Cow position: | chr17:13236850-13236664 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 93 |
| Conread position: | 123-319 |
| Cow position: | chr17:6624132-6624328 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 123-363 |
| Cow position: | chr17:18824664-18824903 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 56, 140 |
| Conread position: | 123-370 |
| Cow position: | chr17:908620-908865 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 123-389 |
| Cow position: | chr17:12554822-12554567 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 172, 63 |
| Conread position: | 123-446 |
| Cow position: | chr17:14231209-14230892 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 132, 26 |
| Conread position: | 124-374 |
| Cow position: | chr17:10459062-10458805 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 125-300 |
| Cow position: | chr17:37342605-37342434 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 127-254 |
| Cow position: | chr17:12216195-12216066 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 53, 72 |
| Conread position: | 127-266 |
| Cow position: | chr17:18109208-18109067 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 127-267 |
| Cow position: | chr17:12591045-12591187 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 127-274 |
| Cow position: | chr17:9697820-9697671 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 78 |
| Conread position: | 127-277 |
| Cow position: | chr17:27429460-27429607 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 134, 59 |
| Conread position: | 127-298 |
| Cow position: | chr17:26162548-26162371 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 127-377 |
| Cow position: | chr17:25740830-25741075 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 130 |
| Conread position: | 128-258 |
| Cow position: | chr17:27819182-27819313 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 128-264 |
| Cow position: | chr17:37415017-37414879 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 128-266 |
| Cow position: | chr17:20928793-20928931 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 128-269 |
| Cow position: | chr17:24608732-24608871 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 85 |
| Conread position: | 128-272 |
| Cow position: | chr17:10510779-10510633 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 72 |
| Conread position: | 128-314 |
| Cow position: | chr17:1653813-1653625 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 128-318 |
| Cow position: | chr17:32279024-32278837 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 128-318 |
| Cow position: | chr17:32280548-32280735 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 128-361 |
| Cow position: | chr17:28359724-28359956 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 128-374 |
| Cow position: | chr17:24580417-24580168 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 128-406 |
| Cow position: | chr17:15450235-15450516 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 109 |
| Conread position: | 128-407 |
| Cow position: | chr17:7251929-7252196 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 204, 47 |
| Conread position: | 128-505 |
| Cow position: | chr17:13922358-13922750 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 129-295 |
| Cow position: | chr17:12108685-12108850 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 51, 72 |
| Conread position: | 130-503 |
| Cow position: | chr17:32348955-32349325 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 131-389 |
| Cow position: | chr17:19237076-19237332 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 172-505 |
| Cow position: | chr17:1469302-1469628 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 202-407 |
| Cow position: | chr17:1310302-1310096 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 63, 11 |
| Conread position: | 218-407 |
| Cow position: | chr17:26532803-26532993 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 163 |
| Conread position: | 227-544 |
| Cow position: | chr17:701384-701714 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 72, 23 |
Show alignments to all cow chromosomes.