Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 73-374 |
| Cow position: | chr18:5766163-5766462 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 101-260 |
| Cow position: | chr18:22121102-22120942 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 95 |
| Conread position: | 105-277 |
| Cow position: | chr18:38344587-38344763 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 24, 97 |
| Conread position: | 105-295 |
| Cow position: | chr18:306276-306091 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 106-314 |
| Cow position: | chr18:40694755-40694959 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 106-398 |
| Cow position: | chr18:39279208-39278920 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 108-234 |
| Cow position: | chr18:49665370-49665246 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 108-269 |
| Cow position: | chr18:33606414-33606577 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 94 |
| Conread position: | 109-268 |
| Cow position: | chr18:19363714-19363881 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 22, 156 |
| Conread position: | 109-274 |
| Cow position: | chr18:19486897-19487068 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 109-304 |
| Cow position: | chr18:29796641-29796445 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 109-360 |
| Cow position: | chr18:34021173-34021428 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 109-360 |
| Cow position: | chr18:35797407-35797659 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 109-370 |
| Cow position: | chr18:51298264-51298530 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 70, 206 |
| Conread position: | 109-379 |
| Cow position: | chr18:23424712-23424976 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 148, 69 |
| Conread position: | 109-380 |
| Cow position: | chr18:16258651-16258920 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 109-407 |
| Cow position: | chr18:8169959-8170265 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 20, 116 |
| Conread position: | 109-475 |
| Cow position: | chr18:23715106-23714729 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 22, 262 |
| Conread position: | 109-571 |
| Cow position: | chr18:28085354-28085839 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 217 |
| Conread position: | 109-574 |
| Cow position: | chr18:32860430-32860917 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 349 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 22, 47 |
| Conread position: | 110-247 |
| Cow position: | chr18:43463621-43463482 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 110-249 |
| Cow position: | chr18:29080610-29080747 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 88, 72 |
| Conread position: | 110-252 |
| Cow position: | chr18:31562610-31562464 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 110-363 |
| Cow position: | chr18:16726430-16726691 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 21, 101 |
| Conread position: | 110-472 |
| Cow position: | chr18:16842282-16841913 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 204 |
| Conread position: | 116-277 |
| Cow position: | chr18:56159254-56159416 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 116-323 |
| Cow position: | chr18:21205156-21205366 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 79 |
| Conread position: | 117-254 |
| Cow position: | chr18:7649793-7649930 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 117-259 |
| Cow position: | chr18:13359860-13360002 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 12 |
| Conread position: | 117-387 |
| Cow position: | chr18:9806210-9806487 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 117-549 |
| Cow position: | chr18:22065563-22065109 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 118-475 |
| Cow position: | chr18:54275328-54275686 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 122-267 |
| Cow position: | chr18:10575908-10576049 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 123, 64 |
| Conread position: | 123-317 |
| Cow position: | chr18:329473-329277 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 43 |
| Conread position: | 123-318 |
| Cow position: | chr18:22411816-22411614 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 124-314 |
| Cow position: | chr18:23652813-23652627 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 141, 53 |
| Conread position: | 127-254 |
| Cow position: | chr18:29356821-29356694 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 127-261 |
| Cow position: | chr18:11183750-11183886 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 127-269 |
| Cow position: | chr18:28101436-28101580 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 127-273 |
| Cow position: | chr18:11691603-11691458 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 127-284 |
| Cow position: | chr18:44262431-44262588 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 127-287 |
| Cow position: | chr18:33407419-33407581 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 74 |
| Conread position: | 127-300 |
| Cow position: | chr18:33007865-33008042 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 127-407 |
| Cow position: | chr18:29224485-29224781 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 128-265 |
| Cow position: | chr18:8204365-8204506 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 128-267 |
| Cow position: | chr18:34325150-34325006 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 128-293 |
| Cow position: | chr18:17669993-17669836 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 128-364 |
| Cow position: | chr18:41259274-41259036 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 128-374 |
| Cow position: | chr18:34052179-34051938 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 121, 44 |
| Conread position: | 128-389 |
| Cow position: | chr18:54031515-54031770 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 133, 49 |
| Conread position: | 128-402 |
| Cow position: | chr18:22434132-22433852 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 128-407 |
| Cow position: | chr18:36187725-36187457 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 167, 43 |
| Conread position: | 128-574 |
| Cow position: | chr18:48549802-48550254 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 51, 169 |
| Conread position: | 129-364 |
| Cow position: | chr18:35098640-35098402 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 129-388 |
| Cow position: | chr18:35472128-35471861 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 198 |
| Conread position: | 130-262 |
| Cow position: | chr18:36230912-36230784 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 130-398 |
| Cow position: | chr18:11367953-11367675 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 187 |
| Conread position: | 150-510 |
| Cow position: | chr18:23487853-23488208 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 153-406 |
| Cow position: | chr18:9078365-9078116 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 102, 33 |
| Conread position: | 166-484 |
| Cow position: | chr18:25847167-25846837 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 13, 160 |
| Conread position: | 172-406 |
| Cow position: | chr18:23669419-23669182 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 75, 149 |
| Conread position: | 188-574 |
| Cow position: | chr18:39475386-39475008 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 218-407 |
| Cow position: | chr18:31393490-31393676 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 346-572 |
| Cow position: | chr18:27404929-27405174 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 64, 126 |
| Conread position: | 429-574 |
| Cow position: | chr18:53028835-53028987 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
Show alignments to all cow chromosomes.