Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 98-267 |
| Cow position: | chr19:31381195-31381025 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 101-271 |
| Cow position: | chr19:24144818-24144991 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 101 |
| Conread position: | 103-377 |
| Cow position: | chr19:15796466-15796735 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 132 |
| Conread position: | 105-262 |
| Cow position: | chr19:34955888-34955730 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 22 |
| Conread position: | 105-264 |
| Cow position: | chr19:35782324-35782167 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 105-277 |
| Cow position: | chr19:44489900-44490074 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 105-436 |
| Cow position: | chr19:31396082-31395761 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 186, 26 |
| Conread position: | 108-264 |
| Cow position: | chr19:47671554-47671714 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 108-273 |
| Cow position: | chr19:42240488-42240318 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 101 |
| Conread position: | 108-366 |
| Cow position: | chr19:2734255-2734518 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 108-573 |
| Cow position: | chr19:3081900-3082367 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 109-247 |
| Cow position: | chr19:38396469-38396331 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 91 |
| Conread position: | 109-255 |
| Cow position: | chr19:28921627-28921779 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 109-300 |
| Cow position: | chr19:18788300-18788103 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 109-314 |
| Cow position: | chr19:27346835-27346633 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 109-359 |
| Cow position: | chr19:42706551-42706304 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 109-363 |
| Cow position: | chr19:1713339-1713073 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 133 |
| Conread position: | 109-363 |
| Cow position: | chr19:36461723-36461464 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 109-377 |
| Cow position: | chr19:35064382-35064114 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 109-380 |
| Cow position: | chr19:3084404-3084125 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 181 |
| Conread position: | 109-571 |
| Cow position: | chr19:36478700-36479175 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 110 |
| Conread position: | 109-576 |
| Cow position: | chr19:30052196-30051705 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 111-255 |
| Cow position: | chr19:55236299-55236444 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 111-298 |
| Cow position: | chr19:19673224-19673416 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 68, 12 |
| Conread position: | 111-571 |
| Cow position: | chr19:426441-425992 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 113-366 |
| Cow position: | chr19:4599886-4600131 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 10, 81 |
| Conread position: | 115-436 |
| Cow position: | chr19:42465678-42465369 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 13, 62 |
| Conread position: | 116-253 |
| Cow position: | chr19:48409326-48409464 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 116-284 |
| Cow position: | chr19:8375490-8375323 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 81 |
| Conread position: | 116-373 |
| Cow position: | chr19:38340165-38339910 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 64, 81 |
| Conread position: | 116-479 |
| Cow position: | chr19:40051575-40051210 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 117-249 |
| Cow position: | chr19:20671080-20670946 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 117-324 |
| Cow position: | chr19:21285263-21285051 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 119-387 |
| Cow position: | chr19:33685917-33686171 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 141, 58 |
| Conread position: | 122-374 |
| Cow position: | chr19:51185248-51185498 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 170, 76 |
| Conread position: | 123-282 |
| Cow position: | chr19:8839425-8839584 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 123-407 |
| Cow position: | chr19:28800302-28800029 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 168, 53 |
| Conread position: | 123-407 |
| Cow position: | chr19:42092381-42092111 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 116, 54 |
| Conread position: | 124-272 |
| Cow position: | chr19:10545882-10545736 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 64, 79 |
| Conread position: | 127-254 |
| Cow position: | chr19:14592880-14593008 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 127-268 |
| Cow position: | chr19:33823143-33823288 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 74 |
| Conread position: | 127-374 |
| Cow position: | chr19:22765447-22765696 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 127-374 |
| Cow position: | chr19:35741988-35742237 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 127-376 |
| Cow position: | chr19:35762426-35762171 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 128-254 |
| Cow position: | chr19:22668061-22668188 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 128-265 |
| Cow position: | chr19:36125415-36125553 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 128-273 |
| Cow position: | chr19:48960221-48960367 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 74 |
| Conread position: | 128-300 |
| Cow position: | chr19:4329216-4329050 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 128-300 |
| Cow position: | chr19:46918673-46918851 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 132 |
| Conread position: | 128-310 |
| Cow position: | chr19:19561337-19561526 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 128-363 |
| Cow position: | chr19:2342308-2342544 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 128-363 |
| Cow position: | chr19:19924773-19924537 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 154 |
| Conread position: | 128-363 |
| Cow position: | chr19:22799252-22799012 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 46, 69 |
| Conread position: | 128-366 |
| Cow position: | chr19:24137089-24137330 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 72 |
| Conread position: | 128-374 |
| Cow position: | chr19:19661873-19662118 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 53, 186 |
| Conread position: | 128-394 |
| Cow position: | chr19:19241921-19242191 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 49, 107 |
| Conread position: | 128-404 |
| Cow position: | chr19:37409219-37408960 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 251, 49 |
| Conread position: | 128-406 |
| Cow position: | chr19:28326599-28326323 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 128-407 |
| Cow position: | chr19:30452943-30452660 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 128-407 |
| Cow position: | chr19:30746231-30746516 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 196 |
| Conread position: | 128-408 |
| Cow position: | chr19:20699920-20700191 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 167, 54 |
| Conread position: | 128-408 |
| Cow position: | chr19:33285451-33285193 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 128-475 |
| Cow position: | chr19:25271589-25271255 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 184 |
| Conread position: | 128-482 |
| Cow position: | chr19:9387462-9387805 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 61 |
| Conread position: | 129-363 |
| Cow position: | chr19:41212224-41211994 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 130 |
| Conread position: | 130-254 |
| Cow position: | chr19:13129702-13129827 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 130-283 |
| Cow position: | chr19:34287854-34288002 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 148, 47 |
| Conread position: | 130-300 |
| Cow position: | chr19:31826930-31827101 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 138-318 |
| Cow position: | chr19:25807465-25807281 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 62 |
| Conread position: | 141-334 |
| Cow position: | chr19:33674488-33674300 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 36 |
| Conread position: | 150-407 |
| Cow position: | chr19:3585370-3585116 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 105, 27 |
| Conread position: | 175-407 |
| Cow position: | chr19:14534771-14534539 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 406-574 |
| Cow position: | chr19:20700213-20700380 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 49 |
| Conread position: | 406-574 |
| Cow position: | chr19:30746539-30746701 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 126, 43 |
| Conread position: | 409-576 |
| Cow position: | chr19:33285168-33285004 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.