Cow genome map

Conread name: Ss1.1-Thy1-THY010205G02.5

Conread position: 73-385
Cow position: chr20:39405577-39405900 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 24, 163

Conread position: 74-358
Cow position: chr20:7600968-7600665 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 217
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 263

Conread position: 101-363
Cow position: chr20:20471645-20471902 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 5, 29

Conread position: 102-255
Cow position: chr20:15577032-15576878 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 31, 15

Conread position: 105-363
Cow position: chr20:38123749-38124006 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 173
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 24

Conread position: 105-379
Cow position: chr20:10838358-10838078 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 58, 24

Conread position: 105-379
Cow position: chr20:17670045-17670317 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 68, 24

Conread position: 105-379
Cow position: chr20:25686489-25686214 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 183
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 24

Conread position: 105-389
Cow position: chr20:13821723-13821435 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 74, 25

Conread position: 105-407
Cow position: chr20:19238569-19238267 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 24

Conread position: 105-572
Cow position: chr20:16585775-16585287 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 25

Conread position: 108-277
Cow position: chr20:7659358-7659187 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 32, 93

Conread position: 108-277
Cow position: chr20:13967401-13967226 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 23, 95

Conread position: 108-279
Cow position: chr20:32988975-32988803 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 73, 37

Conread position: 108-299
Cow position: chr20:33435310-33435118 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 96

Conread position: 109-258
Cow position: chr20:12488775-12488620 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 22, 109

Conread position: 109-284
Cow position: chr20:24069668-24069839 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 77, 23

Conread position: 109-293
Cow position: chr20:14865320-14865127 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 119

Conread position: 109-363
Cow position: chr20:14679476-14679736 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 22, 203

Conread position: 109-366
Cow position: chr20:27001255-27001508 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 94, 36

Conread position: 109-387
Cow position: chr20:7110259-7109980 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 196
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 19, 74

Conread position: 109-389
Cow position: chr20:32153366-32153655 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 21, 57

Conread position: 109-392
Cow position: chr20:32578062-32577775 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 19, 87

Conread position: 109-398
Cow position: chr20:7803290-7803011 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 68

Conread position: 109-406
Cow position: chr20:2683390-2683683 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 22, 89

Conread position: 109-406
Cow position: chr20:25293452-25293757 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 110

Conread position: 109-410
Cow position: chr20:4359797-4359518 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 20, 80

Conread position: 109-456
Cow position: chr20:15073974-15073632 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 233
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 71

Conread position: 109-475
Cow position: chr20:35897376-35897763 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 219

Conread position: 109-576
Cow position: chr20:2608679-2609135 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 310
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 91

Conread position: 110-277
Cow position: chr20:21019427-21019598 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 110-336
Cow position: chr20:15148153-15147926 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 21, 71

Conread position: 110-378
Cow position: chr20:26076943-26077215 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 21, 71

Conread position: 110-490
Cow position: chr20:13465377-13465738 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 31

Conread position: 114-377
Cow position: chr20:19340004-19339749 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 190
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 64, 24

Conread position: 114-385
Cow position: chr20:10759605-10759332 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 68

Conread position: 117-249
Cow position: chr20:5636355-5636487 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 62, 12

Conread position: 117-404
Cow position: chr20:26084109-26083822 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 90

Conread position: 118-407
Cow position: chr20:27977834-27977547 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 222
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 59, 83

Conread position: 123-255
Cow position: chr20:22445759-22445628 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 123-261
Cow position: chr20:14735552-14735690 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 74

Conread position: 123-275
Cow position: chr20:9433464-9433614 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 73, 18

Conread position: 123-298
Cow position: chr20:14831736-14831559 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 55, 94

Conread position: 123-407
Cow position: chr20:17474911-17474622 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 57, 43

Conread position: 123-532
Cow position: chr20:35384628-35385045 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 55

Conread position: 123-572
Cow position: chr20:22920287-22919830 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 322
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 68

Conread position: 124-265
Cow position: chr20:26996411-26996553 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 57, 76

Conread position: 124-294
Cow position: chr20:28067549-28067378 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 75

Conread position: 125-329
Cow position: chr20:11355096-11355305 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 54, 37

Conread position: 127-268
Cow position: chr20:36207686-36207828 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 72

Conread position: 127-300
Cow position: chr20:24833974-24834151 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 46, 72

Conread position: 127-475
Cow position: chr20:8556390-8556034 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 236
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 52, 72

Conread position: 128-267
Cow position: chr20:11741419-11741278 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 71

Conread position: 128-279
Cow position: chr20:10468947-10469097 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 55, 68

Conread position: 128-301
Cow position: chr20:24391865-24392035 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 151, 54

Conread position: 128-318
Cow position: chr20:22420708-22420909 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 128-389
Cow position: chr20:13658961-13658698 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 45, 66

Conread position: 128-407
Cow position: chr20:7539342-7539060 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 49, 87

Conread position: 128-407
Cow position: chr20:20351106-20350828 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 88

Conread position: 128-407
Cow position: chr20:31564087-31563811 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 137, 49

Conread position: 129-266
Cow position: chr20:11542402-11542263 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 72

Conread position: 129-505
Cow position: chr20:23234917-23235278 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 250
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 50, 175

Conread position: 130-318
Cow position: chr20:6240638-6240447 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 133
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 54, 70

Conread position: 130-407
Cow position: chr20:20557767-20557475 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 47, 98

Conread position: 130-407
Cow position: chr20:27843538-27843810 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 213
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 47, 80

Conread position: 133-387
Cow position: chr20:13494398-13494651 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 79

Conread position: 134-282
Cow position: chr20:18185456-18185600 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 406-572
Cow position: chr20:12119431-12119266 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 74, 28

Conread position: 406-574
Cow position: chr20:17474599-17474430 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 52, 44

Conread position: 406-574
Cow position: chr20:25991904-25991731 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 70, 48

Show alignments to all cow chromosomes.