Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 44-364 |
| Cow position: | chr21:20575652-20575335 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 73-269 |
| Cow position: | chr21:20910261-20910054 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 83 |
| Conread position: | 73-300 |
| Cow position: | chr21:32574563-32574797 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 73-483 |
| Cow position: | chr21:8206621-8207022 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 105-294 |
| Cow position: | chr21:36789677-36789857 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 105-324 |
| Cow position: | chr21:28993742-28993516 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 105-379 |
| Cow position: | chr21:31662344-31662622 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 108-266 |
| Cow position: | chr21:12617017-12617177 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 108-272 |
| Cow position: | chr21:19363586-19363416 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 23, 158 |
| Conread position: | 108-276 |
| Cow position: | chr21:4098753-4098923 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 108-278 |
| Cow position: | chr21:34391093-34390923 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 68, 89 |
| Conread position: | 108-307 |
| Cow position: | chr21:13898066-13898263 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 64, 93 |
| Conread position: | 108-475 |
| Cow position: | chr21:30592426-30592057 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 95 |
| Conread position: | 109-266 |
| Cow position: | chr21:29484862-29485020 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 70, 93 |
| Conread position: | 109-300 |
| Cow position: | chr21:34739725-34739920 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 94 |
| Conread position: | 109-317 |
| Cow position: | chr21:34237273-34237479 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 138, 68 |
| Conread position: | 109-363 |
| Cow position: | chr21:35997052-35997311 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 201 |
| Conread position: | 109-384 |
| Cow position: | chr21:23499944-23499668 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 49 |
| Conread position: | 109-406 |
| Cow position: | chr21:24945015-24944713 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 106 |
| Conread position: | 109-407 |
| Cow position: | chr21:16166754-16166458 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 109-410 |
| Cow position: | chr21:33391941-33392245 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 110-265 |
| Cow position: | chr21:12973373-12973206 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 110-293 |
| Cow position: | chr21:2412640-2412830 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 21, 184 |
| Conread position: | 110-388 |
| Cow position: | chr21:6619099-6618831 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 145, 19 |
| Conread position: | 110-407 |
| Cow position: | chr21:37941803-37941502 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 71 |
| Conread position: | 110-531 |
| Cow position: | chr21:1991184-1991605 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 116-264 |
| Cow position: | chr21:395761-395909 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 116-264 |
| Cow position: | chr21:34653967-34654114 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 116-265 |
| Cow position: | chr21:46924-47078 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 83 |
| Conread position: | 116-273 |
| Cow position: | chr21:22860887-22861049 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 116-282 |
| Cow position: | chr21:15911286-15911454 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 137 |
| Conread position: | 116-407 |
| Cow position: | chr21:48282643-48282919 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 116-475 |
| Cow position: | chr21:30849054-30848691 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 116-479 |
| Cow position: | chr21:11645083-11644705 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 117-271 |
| Cow position: | chr21:29002266-29002110 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 118-277 |
| Cow position: | chr21:20262441-20262281 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 86 |
| Conread position: | 118-573 |
| Cow position: | chr21:39765741-39766191 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 329 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 122-262 |
| Cow position: | chr21:6833944-6834086 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 80 |
| Conread position: | 122-374 |
| Cow position: | chr21:29978860-29978610 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 122-535 |
| Cow position: | chr21:37282205-37282605 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 83 |
| Conread position: | 123-267 |
| Cow position: | chr21:28944467-28944320 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 123-273 |
| Cow position: | chr21:27229898-27229743 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 123-282 |
| Cow position: | chr21:39401491-39401649 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 123-294 |
| Cow position: | chr21:42905482-42905309 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 154 |
| Conread position: | 123-295 |
| Cow position: | chr21:49662221-49662048 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 135, 67 |
| Conread position: | 123-318 |
| Cow position: | chr21:12462073-12461873 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 77 |
| Conread position: | 123-373 |
| Cow position: | chr21:14452133-14452383 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 74 |
| Conread position: | 126-473 |
| Cow position: | chr21:9940295-9939953 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 13, 252 |
| Conread position: | 127-257 |
| Cow position: | chr21:27810309-27810441 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 127-260 |
| Cow position: | chr21:18845114-18844979 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 127-284 |
| Cow position: | chr21:13488424-13488580 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 127-300 |
| Cow position: | chr21:41514705-41514883 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 127-324 |
| Cow position: | chr21:25286414-25286615 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 150 |
| Conread position: | 127-508 |
| Cow position: | chr21:33982904-33982522 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 128-284 |
| Cow position: | chr21:3236429-3236579 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 128-289 |
| Cow position: | chr21:36819311-36819140 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 128-299 |
| Cow position: | chr21:28998000-28997823 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 128-319 |
| Cow position: | chr21:34565307-34565116 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 54 |
| Conread position: | 128-320 |
| Cow position: | chr21:29942908-29943102 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 127, 49 |
| Conread position: | 128-381 |
| Cow position: | chr21:32904253-32903998 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 128-385 |
| Cow position: | chr21:23785931-23786192 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 241 |
| Conread position: | 128-389 |
| Cow position: | chr21:27344499-27344242 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 85 |
| Conread position: | 128-407 |
| Cow position: | chr21:10866782-10867056 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 45, 63 |
| Conread position: | 128-407 |
| Cow position: | chr21:34141283-34140990 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 279 |
| Conread position: | 128-407 |
| Cow position: | chr21:37886316-37886586 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 45, 66 |
| Conread position: | 128-407 |
| Cow position: | chr21:39075807-39075527 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 194 |
| Conread position: | 128-407 |
| Cow position: | chr21:45447507-45447772 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 164, 36 |
| Conread position: | 128-483 |
| Cow position: | chr21:23586782-23587139 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 52, 68 |
| Conread position: | 128-487 |
| Cow position: | chr21:957574-957937 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 66 |
| Conread position: | 129-274 |
| Cow position: | chr21:42135717-42135571 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 71 |
| Conread position: | 129-379 |
| Cow position: | chr21:21181079-21181332 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 162 |
| Conread position: | 131-249 |
| Cow position: | chr21:8521158-8521272 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 46, 85 |
| Conread position: | 131-326 |
| Cow position: | chr21:5597055-5597252 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 56, 191 |
| Conread position: | 132-436 |
| Cow position: | chr21:26614761-26614449 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 194 |
| Conread position: | 133-278 |
| Cow position: | chr21:35044402-35044255 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 147-407 |
| Cow position: | chr21:33292633-33292898 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 88, 35 |
| Conread position: | 224-403 |
| Cow position: | chr21:25018859-25019044 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 258-405 |
| Cow position: | chr21:6280325-6280472 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 261-576 |
| Cow position: | chr21:23398991-23399319 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 57 |
| Conread position: | 270-570 |
| Cow position: | chr21:41041457-41041763 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 339-574 |
| Cow position: | chr21:26632329-26632093 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 406-574 |
| Cow position: | chr21:25019069-25019232 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 429-574 |
| Cow position: | chr21:37941271-37941127 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.