Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 73-405 |
| Cow position: | chr23:9192311-9191986 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 73-407 |
| Cow position: | chr23:21631004-21631336 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 75-407 |
| Cow position: | chr23:38027030-38026699 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 48, 34 |
| Conread position: | 93-377 |
| Cow position: | chr23:19636455-19636170 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 101-298 |
| Cow position: | chr23:15056828-15056628 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 83, 22 |
| Conread position: | 102-475 |
| Cow position: | chr23:792213-791859 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 171, 27 |
| Conread position: | 104-269 |
| Cow position: | chr23:5426248-5426413 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 80, 23 |
| Conread position: | 104-305 |
| Cow position: | chr23:19538173-19537980 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 192, 25 |
| Conread position: | 105-313 |
| Cow position: | chr23:615090-614873 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 75, 22 |
| Conread position: | 105-318 |
| Cow position: | chr23:27290960-27290748 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 24 |
| Conread position: | 105-378 |
| Cow position: | chr23:30307728-30308000 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 105-388 |
| Cow position: | chr23:3715586-3715859 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 105-473 |
| Cow position: | chr23:21659759-21660130 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 165 |
| Conread position: | 108-263 |
| Cow position: | chr23:39028600-39028756 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 108-268 |
| Cow position: | chr23:2502033-2501876 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 91 |
| Conread position: | 108-373 |
| Cow position: | chr23:16583093-16582822 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 108-374 |
| Cow position: | chr23:14164584-14164306 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 108-374 |
| Cow position: | chr23:36309241-36309509 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 71, 84 |
| Conread position: | 109-327 |
| Cow position: | chr23:38248717-38248928 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 20, 70 |
| Conread position: | 109-336 |
| Cow position: | chr23:16609993-16609757 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 20, 220 |
| Conread position: | 109-360 |
| Cow position: | chr23:7063692-7063441 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 109-379 |
| Cow position: | chr23:40651645-40651379 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 109-385 |
| Cow position: | chr23:11434439-11434161 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 109-404 |
| Cow position: | chr23:2371192-2371482 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 109-404 |
| Cow position: | chr23:11069039-11069330 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 109-406 |
| Cow position: | chr23:10415209-10414903 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 109-520 |
| Cow position: | chr23:23284962-23285369 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 109-559 |
| Cow position: | chr23:25408652-25409111 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 110-260 |
| Cow position: | chr23:22588452-22588290 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 110-270 |
| Cow position: | chr23:30773861-30773693 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 110-407 |
| Cow position: | chr23:13514995-13515308 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 110-407 |
| Cow position: | chr23:16170516-16170829 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 110-483 |
| Cow position: | chr23:37224248-37223888 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 116-363 |
| Cow position: | chr23:1663511-1663755 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 117-257 |
| Cow position: | chr23:12408678-12408539 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 117-266 |
| Cow position: | chr23:16237424-16237272 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 117-275 |
| Cow position: | chr23:344344-344186 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 117-295 |
| Cow position: | chr23:13599175-13599350 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 123-266 |
| Cow position: | chr23:1924001-1923859 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 73 |
| Conread position: | 123-278 |
| Cow position: | chr23:18296642-18296799 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 123-332 |
| Cow position: | chr23:645163-645373 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 123-406 |
| Cow position: | chr23:7321966-7321693 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 54, 107 |
| Conread position: | 123-483 |
| Cow position: | chr23:534064-534431 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 127-250 |
| Cow position: | chr23:24509541-24509665 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 127-271 |
| Cow position: | chr23:14191392-14191537 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 71 |
| Conread position: | 127-271 |
| Cow position: | chr23:29034156-29034302 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 127-389 |
| Cow position: | chr23:2436487-2436231 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 87, 50 |
| Conread position: | 128-296 |
| Cow position: | chr23:1885332-1885162 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 128-300 |
| Cow position: | chr23:20752856-20753031 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 128-327 |
| Cow position: | chr23:9546241-9546445 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 62 |
| Conread position: | 128-360 |
| Cow position: | chr23:30128265-30128037 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 47 |
| Conread position: | 128-363 |
| Cow position: | chr23:9711744-9711517 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 127 |
| Conread position: | 128-363 |
| Cow position: | chr23:21452891-21452651 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 45, 78 |
| Conread position: | 128-363 |
| Cow position: | chr23:31607317-31607076 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 131 |
| Conread position: | 128-372 |
| Cow position: | chr23:1767670-1767917 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 128-379 |
| Cow position: | chr23:20171418-20171674 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 128-388 |
| Cow position: | chr23:22524654-22524414 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 128-389 |
| Cow position: | chr23:10845052-10844792 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 129-277 |
| Cow position: | chr23:10014380-10014530 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 129-377 |
| Cow position: | chr23:40862184-40862437 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 184 |
| Conread position: | 130-273 |
| Cow position: | chr23:15872855-15872709 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 130-282 |
| Cow position: | chr23:3247427-3247579 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 50, 66 |
| Conread position: | 130-406 |
| Cow position: | chr23:7252912-7253183 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 52 |
| Conread position: | 130-483 |
| Cow position: | chr23:15742934-15743295 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 150-407 |
| Cow position: | chr23:30745720-30745452 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 174-407 |
| Cow position: | chr23:5737835-5737600 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 183-407 |
| Cow position: | chr23:9725346-9725124 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 406-574 |
| Cow position: | chr23:7253228-7253387 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 136, 46 |
| Conread position: | 406-574 |
| Cow position: | chr23:16170852-16171014 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 46 |
| Conread position: | 406-574 |
| Cow position: | chr23:36674627-36674466 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.