Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 73-366 |
| Cow position: | chr24:18970750-18970453 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 73-407 |
| Cow position: | chr24:17763509-17763168 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 36 |
| Conread position: | 73-570 |
| Cow position: | chr24:12234573-12234034 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 352 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 101-407 |
| Cow position: | chr24:26846490-26846164 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 103-405 |
| Cow position: | chr24:31786905-31786625 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 180, 26 |
| Conread position: | 104-475 |
| Cow position: | chr24:28721682-28722046 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 69, 37 |
| Conread position: | 105-258 |
| Cow position: | chr24:16909435-16909585 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 105-272 |
| Cow position: | chr24:7079582-7079753 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 74, 22 |
| Conread position: | 105-272 |
| Cow position: | chr24:25677829-25677994 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 105-356 |
| Cow position: | chr24:34369212-34368962 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 70, 24 |
| Conread position: | 105-501 |
| Cow position: | chr24:32758968-32758587 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 108-314 |
| Cow position: | chr24:31036147-31036352 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 108-360 |
| Cow position: | chr24:17104776-17104521 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 109-267 |
| Cow position: | chr24:43733760-43733927 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 109-268 |
| Cow position: | chr24:6507973-6507815 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 105 |
| Conread position: | 109-271 |
| Cow position: | chr24:14746426-14746594 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 109-299 |
| Cow position: | chr24:37205088-37204896 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 22, 167 |
| Conread position: | 109-360 |
| Cow position: | chr24:39350418-39350167 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 98 |
| Conread position: | 109-363 |
| Cow position: | chr24:39681646-39681903 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 91 |
| Conread position: | 109-379 |
| Cow position: | chr24:14617447-14617727 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 264 |
| Conread position: | 109-408 |
| Cow position: | chr24:30900437-30900136 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 109-520 |
| Cow position: | chr24:28349376-28349778 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 109-574 |
| Cow position: | chr24:14913744-14913295 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 275, 68 |
| Conread position: | 110-266 |
| Cow position: | chr24:18787127-18786964 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 110-300 |
| Cow position: | chr24:30860428-30860625 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 110-407 |
| Cow position: | chr24:37386549-37386254 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 114-379 |
| Cow position: | chr24:18243672-18243400 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 183 |
| Conread position: | 115-361 |
| Cow position: | chr24:40091775-40091530 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 136 |
| Conread position: | 116-272 |
| Cow position: | chr24:21860423-21860262 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 116-284 |
| Cow position: | chr24:24250530-24250697 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 85 |
| Conread position: | 116-294 |
| Cow position: | chr24:27967878-27968058 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 15, 86 |
| Conread position: | 116-294 |
| Cow position: | chr24:43364161-43364335 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 81 |
| Conread position: | 117-572 |
| Cow position: | chr24:25245855-25246318 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 329 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 166, 12 |
| Conread position: | 118-323 |
| Cow position: | chr24:18390485-18390282 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 119-273 |
| Cow position: | chr24:25885355-25885199 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 119-300 |
| Cow position: | chr24:20862156-20861972 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 12, 142 |
| Conread position: | 123-260 |
| Cow position: | chr24:21264702-21264562 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 132 |
| Conread position: | 123-267 |
| Cow position: | chr24:31258530-31258381 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 123-379 |
| Cow position: | chr24:40041032-40040777 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 123-386 |
| Cow position: | chr24:25229249-25228990 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 125-300 |
| Cow position: | chr24:16895625-16895451 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 127-255 |
| Cow position: | chr24:28062765-28062893 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 127-255 |
| Cow position: | chr24:39500466-39500336 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 127-266 |
| Cow position: | chr24:30897725-30897584 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 127-268 |
| Cow position: | chr24:5141757-5141899 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 127-278 |
| Cow position: | chr24:33724034-33723879 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 127-294 |
| Cow position: | chr24:35794923-35794761 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 128-266 |
| Cow position: | chr24:15919521-15919663 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 128-267 |
| Cow position: | chr24:211799-211940 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 128-314 |
| Cow position: | chr24:24311318-24311509 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 67 |
| Conread position: | 128-317 |
| Cow position: | chr24:31378574-31378762 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 154, 55 |
| Conread position: | 128-327 |
| Cow position: | chr24:28028890-28028695 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 133, 49 |
| Conread position: | 128-357 |
| Cow position: | chr24:16476221-16476451 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 128-379 |
| Cow position: | chr24:27054221-27054478 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 179 |
| Conread position: | 128-404 |
| Cow position: | chr24:30695883-30695610 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 128-407 |
| Cow position: | chr24:15473774-15474039 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 143, 50 |
| Conread position: | 128-407 |
| Cow position: | chr24:21093643-21093380 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 127, 13 |
| Conread position: | 128-407 |
| Cow position: | chr24:35836422-35836152 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 128-416 |
| Cow position: | chr24:12572340-12572634 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 47, 164 |
| Conread position: | 129-363 |
| Cow position: | chr24:35827556-35827789 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 128, 48 |
| Conread position: | 129-574 |
| Cow position: | chr24:38643454-38643901 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 314 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 162, 48 |
| Conread position: | 138-266 |
| Cow position: | chr24:37037723-37037850 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 141-397 |
| Cow position: | chr24:17416971-17417216 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 153-379 |
| Cow position: | chr24:26455678-26455908 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 126 |
| Conread position: | 172-373 |
| Cow position: | chr24:41405457-41405252 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 172-407 |
| Cow position: | chr24:6177261-6177491 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 84, 43 |
| Conread position: | 180-403 |
| Cow position: | chr24:42817129-42817351 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 198-405 |
| Cow position: | chr24:28440475-28440685 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 115 |
| Conread position: | 206-404 |
| Cow position: | chr24:19627221-19627422 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 56, 115 |
| Conread position: | 218-475 |
| Cow position: | chr24:36173058-36173322 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 104 |
| Conread position: | 244-407 |
| Cow position: | chr24:36853255-36853418 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 406-536 |
| Cow position: | chr24:36853440-36853569 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 429-574 |
| Cow position: | chr24:32579320-32579460 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 116, 28 |
Show alignments to all cow chromosomes.