Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 72-314 |
| Cow position: | chr25:18161064-18161312 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 124 |
| Conread position: | 74-291 |
| Cow position: | chr25:16241032-16240816 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 101-483 |
| Cow position: | chr25:8512282-8511912 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 103-379 |
| Cow position: | chr25:2126284-2126552 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 230, 26 |
| Conread position: | 105-255 |
| Cow position: | chr25:14467268-14467115 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 79, 24 |
| Conread position: | 108-267 |
| Cow position: | chr25:21042199-21042356 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 90 |
| Conread position: | 108-271 |
| Cow position: | chr25:8347321-8347490 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 109-300 |
| Cow position: | chr25:8560680-8560879 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 31, 40 |
| Conread position: | 109-314 |
| Cow position: | chr25:24405923-24405709 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 109-360 |
| Cow position: | chr25:22735938-22736185 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 109-376 |
| Cow position: | chr25:13122984-13123243 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 109-406 |
| Cow position: | chr25:16430217-16429930 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 109-407 |
| Cow position: | chr25:18206487-18206186 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 109-566 |
| Cow position: | chr25:30035361-30035830 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 116-277 |
| Cow position: | chr25:16001700-16001540 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 63, 84 |
| Conread position: | 117-300 |
| Cow position: | chr25:18905711-18905893 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 117-369 |
| Cow position: | chr25:33786256-33786009 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 144, 56 |
| Conread position: | 118-363 |
| Cow position: | chr25:6961329-6961079 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 122-262 |
| Cow position: | chr25:13333254-13333396 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 123-305 |
| Cow position: | chr25:11131412-11131599 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 123-317 |
| Cow position: | chr25:24136605-24136409 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 104 |
| Conread position: | 123-318 |
| Cow position: | chr25:12239317-12239119 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 148 |
| Conread position: | 123-363 |
| Cow position: | chr25:40957157-40956911 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 124-300 |
| Cow position: | chr25:20211246-20211070 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 153, 80 |
| Conread position: | 125-575 |
| Cow position: | chr25:38357936-38358392 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 127-267 |
| Cow position: | chr25:32191506-32191646 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 127-284 |
| Cow position: | chr25:20023554-20023398 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 72 |
| Conread position: | 127-300 |
| Cow position: | chr25:35347743-35347914 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 127-318 |
| Cow position: | chr25:14791589-14791785 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 127-389 |
| Cow position: | chr25:23355751-23356012 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 49, 126 |
| Conread position: | 127-479 |
| Cow position: | chr25:19129688-19130049 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 128-261 |
| Cow position: | chr25:15440944-15440806 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 128-265 |
| Cow position: | chr25:395192-395327 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 130, 49 |
| Conread position: | 128-299 |
| Cow position: | chr25:12817212-12817382 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 69, 121 |
| Conread position: | 128-305 |
| Cow position: | chr25:25827302-25827478 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 61, 131 |
| Conread position: | 128-310 |
| Cow position: | chr25:5514846-5515033 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 128-310 |
| Cow position: | chr25:9961337-9961154 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 128-315 |
| Cow position: | chr25:33691393-33691584 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 128-324 |
| Cow position: | chr25:12756729-12756531 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 45, 186 |
| Conread position: | 128-426 |
| Cow position: | chr25:13472054-13471766 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 66 |
| Conread position: | 129-265 |
| Cow position: | chr25:26679065-26679203 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 130-499 |
| Cow position: | chr25:9002513-9002883 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 131-405 |
| Cow position: | chr25:10013577-10013317 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 208, 50 |
| Conread position: | 153-360 |
| Cow position: | chr25:16691524-16691731 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 157-482 |
| Cow position: | chr25:18000660-18000352 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 163-385 |
| Cow position: | chr25:16941207-16940983 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 170-529 |
| Cow position: | chr25:14279139-14279519 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 400-574 |
| Cow position: | chr25:13123340-13123515 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 406-571 |
| Cow position: | chr25:18643934-18643766 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 120, 46 |
| Conread position: | 425-576 |
| Cow position: | chr25:23014315-23014459 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.