Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 73-277 |
| Cow position: | chr26:14924282-14924490 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 36 |
| Conread position: | 73-410 |
| Cow position: | chr26:21013156-21013482 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 14 |
| Conread position: | 101-262 |
| Cow position: | chr26:32659626-32659463 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 105-286 |
| Cow position: | chr26:7103199-7103018 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 105-300 |
| Cow position: | chr26:8504095-8504290 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 70, 24 |
| Conread position: | 105-305 |
| Cow position: | chr26:2389215-2389019 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 25 |
| Conread position: | 105-329 |
| Cow position: | chr26:6252684-6252912 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 25 |
| Conread position: | 105-363 |
| Cow position: | chr26:29353674-29353419 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 105-407 |
| Cow position: | chr26:15632327-15632622 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 140, 24 |
| Conread position: | 105-475 |
| Cow position: | chr26:9632534-9632173 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 18 |
| Conread position: | 107-277 |
| Cow position: | chr26:23315605-23315777 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 108-274 |
| Cow position: | chr26:27594466-27594635 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 89 |
| Conread position: | 108-300 |
| Cow position: | chr26:33567212-33567015 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 109-242 |
| Cow position: | chr26:7961468-7961602 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 72, 90 |
| Conread position: | 109-270 |
| Cow position: | chr26:32866056-32865892 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 109-278 |
| Cow position: | chr26:6475596-6475422 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 92 |
| Conread position: | 109-360 |
| Cow position: | chr26:14080551-14080796 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 64, 89 |
| Conread position: | 109-363 |
| Cow position: | chr26:4664597-4664337 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 109-379 |
| Cow position: | chr26:12669030-12669307 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 21, 110 |
| Conread position: | 109-475 |
| Cow position: | chr26:21242935-21243296 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 110-270 |
| Cow position: | chr26:30605530-30605364 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 21, 154 |
| Conread position: | 110-407 |
| Cow position: | chr26:12069457-12069745 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 110-458 |
| Cow position: | chr26:22162036-22161678 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 220 |
| Conread position: | 114-360 |
| Cow position: | chr26:17204303-17204055 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 117-272 |
| Cow position: | chr26:25737315-25737472 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 86 |
| Conread position: | 117-300 |
| Cow position: | chr26:14175125-14175311 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 117-300 |
| Cow position: | chr26:21351535-21351720 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 117-315 |
| Cow position: | chr26:16549829-16550027 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 64, 83 |
| Conread position: | 117-323 |
| Cow position: | chr26:25393876-25394086 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 122-407 |
| Cow position: | chr26:28421904-28421626 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 143, 57 |
| Conread position: | 123-363 |
| Cow position: | chr26:2769990-2769750 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 83 |
| Conread position: | 127-272 |
| Cow position: | chr26:13706150-13706004 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 127-366 |
| Cow position: | chr26:22249624-22249381 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 127-574 |
| Cow position: | chr26:30603266-30602798 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 57, 210 |
| Conread position: | 128-254 |
| Cow position: | chr26:19769226-19769100 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 49 |
| Conread position: | 128-271 |
| Cow position: | chr26:17675878-17675736 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 48, 105 |
| Conread position: | 128-272 |
| Cow position: | chr26:17289060-17289209 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 128-294 |
| Cow position: | chr26:27491646-27491483 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 128-300 |
| Cow position: | chr26:20129816-20129641 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 128-364 |
| Cow position: | chr26:16510641-16510883 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 159 |
| Conread position: | 128-380 |
| Cow position: | chr26:22622840-22623098 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 128-382 |
| Cow position: | chr26:2609945-2609695 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 124 |
| Conread position: | 128-388 |
| Cow position: | chr26:6828025-6828281 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 45, 13 |
| Conread position: | 128-406 |
| Cow position: | chr26:14364231-14363949 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 155 |
| Conread position: | 128-408 |
| Cow position: | chr26:16906213-16906482 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 154, 47 |
| Conread position: | 128-411 |
| Cow position: | chr26:34031960-34032235 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 99, 31 |
| Conread position: | 138-473 |
| Cow position: | chr26:14905945-14905609 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 406-570 |
| Cow position: | chr26:34089838-34089994 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 139, 46 |
| Conread position: | 420-576 |
| Cow position: | chr26:19492933-19493085 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 125, 35 |
Show alignments to all cow chromosomes.