Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 91-380 |
| Cow position: | chr27:1141875-1142174 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 103-258 |
| Cow position: | chr27:29679184-29679337 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 105-287 |
| Cow position: | chr27:13860603-13860776 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 144, 24 |
| Conread position: | 105-299 |
| Cow position: | chr27:8048600-8048795 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 106-329 |
| Cow position: | chr27:13005979-13005757 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 107-265 |
| Cow position: | chr27:26440922-26441081 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 107-379 |
| Cow position: | chr27:6454349-6454072 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 108-277 |
| Cow position: | chr27:4011816-4011648 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 15 |
| Conread position: | 108-294 |
| Cow position: | chr27:30765174-30764989 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 108-301 |
| Cow position: | chr27:19685572-19685770 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 109-317 |
| Cow position: | chr27:20765822-20766033 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 22, 109 |
| Conread position: | 109-318 |
| Cow position: | chr27:19647800-19648016 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 109-363 |
| Cow position: | chr27:14937287-14937549 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 109-379 |
| Cow position: | chr27:12243994-12244260 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 110-407 |
| Cow position: | chr27:19577815-19577512 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 21, 220 |
| Conread position: | 114-270 |
| Cow position: | chr27:11416581-11416422 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 116-266 |
| Cow position: | chr27:16871781-16871934 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 116-267 |
| Cow position: | chr27:20789245-20789400 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 85 |
| Conread position: | 116-270 |
| Cow position: | chr27:27003147-27003299 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 122-374 |
| Cow position: | chr27:29038820-29039071 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 123-262 |
| Cow position: | chr27:27550624-27550759 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 123-360 |
| Cow position: | chr27:26161619-26161385 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 138, 36 |
| Conread position: | 123-406 |
| Cow position: | chr27:3934565-3934845 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 123-479 |
| Cow position: | chr27:16103927-16103570 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 127-264 |
| Cow position: | chr27:815485-815346 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 73 |
| Conread position: | 127-272 |
| Cow position: | chr27:22220669-22220531 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 128-268 |
| Cow position: | chr27:25998819-25998680 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 131, 49 |
| Conread position: | 128-270 |
| Cow position: | chr27:15200812-15200676 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 128-272 |
| Cow position: | chr27:24357380-24357233 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 61, 125 |
| Conread position: | 128-276 |
| Cow position: | chr27:465076-464924 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 128-276 |
| Cow position: | chr27:22268619-22268472 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 128-297 |
| Cow position: | chr27:8430326-8430490 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 128-300 |
| Cow position: | chr27:19896871-19896701 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 128-301 |
| Cow position: | chr27:23070245-23070414 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 128-342 |
| Cow position: | chr27:8587546-8587772 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 167 |
| Conread position: | 128-363 |
| Cow position: | chr27:26299957-26299723 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 120 |
| Conread position: | 128-373 |
| Cow position: | chr27:8168311-8168559 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 74 |
| Conread position: | 128-377 |
| Cow position: | chr27:28921782-28922026 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 128-378 |
| Cow position: | chr27:24342018-24341771 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 128-407 |
| Cow position: | chr27:25676343-25676067 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 87 |
| Conread position: | 128-407 |
| Cow position: | chr27:27737807-27738090 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 48, 186 |
| Conread position: | 128-407 |
| Cow position: | chr27:30888776-30889055 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 128-436 |
| Cow position: | chr27:4007130-4007448 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 129-381 |
| Cow position: | chr27:18569576-18569331 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 89 |
| Conread position: | 129-381 |
| Cow position: | chr27:23554206-23554464 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 145 |
| Conread position: | 129-474 |
| Cow position: | chr27:11672128-11671775 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 130-389 |
| Cow position: | chr27:9159311-9159064 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 134 |
| Conread position: | 130-389 |
| Cow position: | chr27:30698509-30698763 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 133-545 |
| Cow position: | chr27:30573141-30573546 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 128, 44 |
| Conread position: | 141-403 |
| Cow position: | chr27:156321-156580 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 143-385 |
| Cow position: | chr27:27234125-27233879 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 147 |
| Conread position: | 159-381 |
| Cow position: | chr27:28293247-28293024 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 8 |
| Conread position: | 167-407 |
| Cow position: | chr27:9261911-9261667 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 155 |
| Conread position: | 168-475 |
| Cow position: | chr27:19083641-19083935 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 20 |
| Conread position: | 172-406 |
| Cow position: | chr27:5530826-5530589 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 83, 149 |
| Conread position: | 263-407 |
| Cow position: | chr27:9184607-9184457 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 55 |
| Conread position: | 406-560 |
| Cow position: | chr27:11935519-11935371 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 406-574 |
| Cow position: | chr27:3934869-3935037 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 83, 46 |
Show alignments to all cow chromosomes.