Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 73-363 |
| Cow position: | chr28:616174-616467 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 26, 71 |
| Conread position: | 101-359 |
| Cow position: | chr28:25563897-25564161 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 105-254 |
| Cow position: | chr28:23231242-23231094 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 105-351 |
| Cow position: | chr28:34208528-34208777 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 68, 25 |
| Conread position: | 105-407 |
| Cow position: | chr28:13725987-13726287 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 106-266 |
| Cow position: | chr28:25596450-25596609 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 108-267 |
| Cow position: | chr28:11422985-11422831 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 136, 20 |
| Conread position: | 108-267 |
| Cow position: | chr28:34150708-34150543 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 108-297 |
| Cow position: | chr28:18760223-18760034 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 108-314 |
| Cow position: | chr28:16253038-16252825 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 108-368 |
| Cow position: | chr28:23793483-23793223 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 108-481 |
| Cow position: | chr28:23007906-23007537 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 71, 22 |
| Conread position: | 109-255 |
| Cow position: | chr28:21873593-21873742 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 109-255 |
| Cow position: | chr28:30978102-30978245 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 109-264 |
| Cow position: | chr28:34116973-34117127 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 105 |
| Conread position: | 109-267 |
| Cow position: | chr28:16686853-16687010 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 109-267 |
| Cow position: | chr28:31971931-31971770 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 109-271 |
| Cow position: | chr28:10642197-10642030 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 109-277 |
| Cow position: | chr28:12942201-12942374 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 109-314 |
| Cow position: | chr28:9851451-9851644 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 31 |
| Conread position: | 109-324 |
| Cow position: | chr28:32300539-32300315 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 109-378 |
| Cow position: | chr28:2814679-2814414 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 72 |
| Conread position: | 109-378 |
| Cow position: | chr28:21570010-21570286 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 112 |
| Conread position: | 109-381 |
| Cow position: | chr28:7345354-7345628 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 110-267 |
| Cow position: | chr28:16350220-16350071 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 153, 31 |
| Conread position: | 110-407 |
| Cow position: | chr28:20265210-20265525 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 21, 218 |
| Conread position: | 110-574 |
| Cow position: | chr28:22855126-22855594 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 111-264 |
| Cow position: | chr28:10035222-10035377 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 139 |
| Conread position: | 111-388 |
| Cow position: | chr28:30370624-30370893 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 112-294 |
| Cow position: | chr28:13607716-13607892 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 114-494 |
| Cow position: | chr28:26719182-26719547 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 116-406 |
| Cow position: | chr28:22613760-22614037 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 143, 13 |
| Conread position: | 118-254 |
| Cow position: | chr28:23668954-23668814 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 122-240 |
| Cow position: | chr28:10189886-10189764 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 123-314 |
| Cow position: | chr28:13902120-13901941 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 123-377 |
| Cow position: | chr28:23621386-23621631 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 123-554 |
| Cow position: | chr28:26627306-26626881 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 128 |
| Conread position: | 125-475 |
| Cow position: | chr28:33285272-33284930 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 55, 71 |
| Conread position: | 127-261 |
| Cow position: | chr28:16204486-16204351 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 127-268 |
| Cow position: | chr28:11752298-11752158 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 127-376 |
| Cow position: | chr28:11884677-11884426 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 128-267 |
| Cow position: | chr28:9285530-9285388 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 128-279 |
| Cow position: | chr28:19563977-19563825 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 128-286 |
| Cow position: | chr28:23352413-23352577 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 128-287 |
| Cow position: | chr28:16250195-16250039 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 79, 13 |
| Conread position: | 128-293 |
| Cow position: | chr28:13693594-13693763 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 163 |
| Conread position: | 128-295 |
| Cow position: | chr28:2752653-2752484 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 128-299 |
| Cow position: | chr28:13267629-13267801 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 128-318 |
| Cow position: | chr28:27218168-27218358 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 72 |
| Conread position: | 128-351 |
| Cow position: | chr28:7590338-7590119 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 128-379 |
| Cow position: | chr28:20963684-20963433 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 126, 16 |
| Conread position: | 128-381 |
| Cow position: | chr28:2340379-2340635 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 42, 119 |
| Conread position: | 128-389 |
| Cow position: | chr28:11380195-11379934 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 54 |
| Conread position: | 128-406 |
| Cow position: | chr28:6486441-6486718 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 163, 71 |
| Conread position: | 128-407 |
| Cow position: | chr28:5475186-5474904 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 128-483 |
| Cow position: | chr28:25796970-25797307 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 128-533 |
| Cow position: | chr28:21940043-21940458 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 80 |
| Conread position: | 128-569 |
| Cow position: | chr28:7607075-7607535 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 196 |
| Conread position: | 129-268 |
| Cow position: | chr28:4070814-4070955 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 129-368 |
| Cow position: | chr28:11687184-11686942 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 129-482 |
| Cow position: | chr28:15934802-15934445 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 156 |
| Conread position: | 133-475 |
| Cow position: | chr28:30746879-30746540 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 147-408 |
| Cow position: | chr28:22829794-22830050 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 114, 30 |
| Conread position: | 150-406 |
| Cow position: | chr28:34636534-34636788 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 172-405 |
| Cow position: | chr28:6277660-6277428 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 119, 115 |
| Conread position: | 186-405 |
| Cow position: | chr28:13936298-13936520 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 82, 135 |
| Conread position: | 196-380 |
| Cow position: | chr28:16466533-16466720 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 406-571 |
| Cow position: | chr28:15915104-15914944 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 406-574 |
| Cow position: | chr28:15349607-15349770 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 406-574 |
| Cow position: | chr28:22830071-22830233 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 409-572 |
| Cow position: | chr28:22360788-22360948 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 122, 42 |
| Conread position: | 409-574 |
| Cow position: | chr28:16805331-16805158 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 45 |
Show alignments to all cow chromosomes.