Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 |
| Conread position: | 73-407 |
| Cow position: | chr29:19931122-19931447 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 92-298 |
| Cow position: | chr29:650078-650289 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 98-294 |
| Cow position: | chr29:5186688-5186497 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 101-282 |
| Cow position: | chr29:2744461-2744282 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 21 |
| Conread position: | 101-348 |
| Cow position: | chr29:31489130-31489372 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 105-407 |
| Cow position: | chr29:8906339-8906648 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 105-407 |
| Cow position: | chr29:42268510-42268814 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 105-414 |
| Cow position: | chr29:477921-478232 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 107-267 |
| Cow position: | chr29:4480355-4480195 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 107-300 |
| Cow position: | chr29:23984142-23983945 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 108-313 |
| Cow position: | chr29:26986751-26986953 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 24 |
| Conread position: | 108-483 |
| Cow position: | chr29:4520148-4520531 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 109-266 |
| Cow position: | chr29:296004-295847 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 22, 89 |
| Conread position: | 109-299 |
| Cow position: | chr29:13553946-13554150 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 109-300 |
| Cow position: | chr29:4367534-4367736 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 109-407 |
| Cow position: | chr29:2481520-2481222 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 109-407 |
| Cow position: | chr29:17339483-17339188 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 109-407 |
| Cow position: | chr29:34757845-34758139 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 109-504 |
| Cow position: | chr29:31488681-31489088 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 110-316 |
| Cow position: | chr29:34736651-34736446 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 142 |
| Conread position: | 111-268 |
| Cow position: | chr29:19508775-19508930 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 83 |
| Conread position: | 111-381 |
| Cow position: | chr29:43963705-43963441 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 114-285 |
| Cow position: | chr29:3395929-3396097 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 67, 86 |
| Conread position: | 114-384 |
| Cow position: | chr29:2885632-2885360 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 116-284 |
| Cow position: | chr29:22162430-22162261 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 85 |
| Conread position: | 117-365 |
| Cow position: | chr29:7828641-7828386 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 117-367 |
| Cow position: | chr29:38246915-38246664 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 56, 12 |
| Conread position: | 117-406 |
| Cow position: | chr29:16359442-16359737 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 117-407 |
| Cow position: | chr29:18338715-18338426 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 122-364 |
| Cow position: | chr29:16662912-16663167 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 9, 203 |
| Conread position: | 123-380 |
| Cow position: | chr29:37961146-37960886 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 56, 95 |
| Conread position: | 123-401 |
| Cow position: | chr29:30812582-30812860 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 54 |
| Conread position: | 123-475 |
| Cow position: | chr29:2589060-2588707 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 127-261 |
| Cow position: | chr29:32211220-32211090 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 127-269 |
| Cow position: | chr29:4334563-4334703 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 70 |
| Conread position: | 127-271 |
| Cow position: | chr29:44682261-44682117 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 67 |
| Conread position: | 128-254 |
| Cow position: | chr29:3100421-3100293 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 128-277 |
| Cow position: | chr29:22778341-22778190 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 128-279 |
| Cow position: | chr29:709284-709129 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 128-355 |
| Cow position: | chr29:24952525-24952753 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 128-360 |
| Cow position: | chr29:14034488-14034255 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 49 |
| Conread position: | 128-374 |
| Cow position: | chr29:9912009-9912260 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 128-407 |
| Cow position: | chr29:6472155-6472425 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 129-357 |
| Cow position: | chr29:25924130-25923893 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 48, 186 |
| Conread position: | 129-379 |
| Cow position: | chr29:13634459-13634209 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 132, 45 |
| Conread position: | 129-574 |
| Cow position: | chr29:22454955-22454525 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 304 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 132-407 |
| Cow position: | chr29:9512714-9512991 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 41, 103 |
| Conread position: | 173-407 |
| Cow position: | chr29:798515-798278 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 182-364 |
| Cow position: | chr29:13653118-13653311 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 6, 138 |
| Conread position: | 403-574 |
| Cow position: | chr29:21198513-21198338 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 411-574 |
| Cow position: | chr29:18338398-18338233 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 41 |
Show alignments to all cow chromosomes.