Cow genome map
| Conread name: | Ss1.1-Thy1-THY010205G02.5 | 
| Conread position: | 60-294 | 
| Cow position: | chr6:17313541-17313773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 42, 37 | 
| Conread position: | 73-276 | 
| Cow position: | chr6:17669116-17669322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 36, 154 | 
| Conread position: | 85-277 | 
| Cow position: | chr6:582438-582245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 5, 113 | 
| Conread position: | 93-363 | 
| Cow position: | chr6:30474170-30474444 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 13, 37 | 
| Conread position: | 101-295 | 
| Cow position: | chr6:13741547-13741746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 71, 29 | 
| Conread position: | 101-340 | 
| Cow position: | chr6:9219125-9219365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 79, 25 | 
| Conread position: | 102-379 | 
| Cow position: | chr6:63197315-63197032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 88, 27 | 
| Conread position: | 102-405 | 
| Cow position: | chr6:51071565-51071865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 155, 27 | 
| Conread position: | 102-407 | 
| Cow position: | chr6:45617583-45617274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 27 | 
| Conread position: | 103-379 | 
| Cow position: | chr6:48573026-48572749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 13, 28 | 
| Conread position: | 105-265 | 
| Cow position: | chr6:55892622-55892790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 56, 25 | 
| Conread position: | 105-292 | 
| Cow position: | chr6:30285550-30285730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 9e-30 | 
| Alignm gaps (pig, cow): | 150, 25 | 
| Conread position: | 105-297 | 
| Cow position: | chr6:10254099-10254288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 135, 25 | 
| Conread position: | 105-322 | 
| Cow position: | chr6:7824620-7824841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 68, 24 | 
| Conread position: | 105-389 | 
| Cow position: | chr6:44377124-44377411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 24 | 
| Conread position: | 105-415 | 
| Cow position: | chr6:51191674-51192001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 61, 24 | 
| Conread position: | 105-563 | 
| Cow position: | chr6:27710515-27710981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 232, 24 | 
| Conread position: | 108-275 | 
| Cow position: | chr6:38641352-38641521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 73, 88 | 
| Conread position: | 108-318 | 
| Cow position: | chr6:34196294-34196080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 21, 95 | 
| Conread position: | 108-475 | 
| Cow position: | chr6:29239798-29240165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 73, 28 | 
| Conread position: | 108-574 | 
| Cow position: | chr6:62326999-62327458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 92 | 
| Conread position: | 109-273 | 
| Cow position: | chr6:8318309-8318138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 22, 0 | 
| Conread position: | 109-279 | 
| Cow position: | chr6:28080042-28079868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 109-300 | 
| Cow position: | chr6:44372088-44371893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 22, 40 | 
| Conread position: | 109-300 | 
| Cow position: | chr6:53731381-53731574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 71, 14 | 
| Conread position: | 109-357 | 
| Cow position: | chr6:24223305-24223049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 22, 211 | 
| Conread position: | 109-358 | 
| Cow position: | chr6:6995091-6994846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 148, 68 | 
| Conread position: | 109-367 | 
| Cow position: | chr6:34549266-34549522 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 22, 72 | 
| Conread position: | 109-374 | 
| Cow position: | chr6:55475101-55475381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 22, 183 | 
| Conread position: | 109-379 | 
| Cow position: | chr6:56376495-56376218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 20, 176 | 
| Conread position: | 109-388 | 
| Cow position: | chr6:6188108-6188360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 22, 69 | 
| Conread position: | 109-403 | 
| Cow position: | chr6:55936121-55935822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 22, 46 | 
| Conread position: | 109-404 | 
| Cow position: | chr6:29077584-29077889 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 106 | 
| Conread position: | 109-407 | 
| Cow position: | chr6:10423029-10423326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 22, 101 | 
| Conread position: | 109-407 | 
| Cow position: | chr6:54032107-54032386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 146, 52 | 
| Conread position: | 109-414 | 
| Cow position: | chr6:11383115-11382804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 121, 68 | 
| Conread position: | 109-430 | 
| Cow position: | chr6:57686015-57686332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 20, 79 | 
| Conread position: | 109-436 | 
| Cow position: | chr6:13592565-13592897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 6e-37 | 
| Alignm gaps (pig, cow): | 22, 48 | 
| Conread position: | 110-254 | 
| Cow position: | chr6:47327211-47327060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 110-278 | 
| Cow position: | chr6:37739042-37739217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 21, 149 | 
| Conread position: | 110-299 | 
| Cow position: | chr6:12387468-12387276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 21, 110 | 
| Conread position: | 110-450 | 
| Cow position: | chr6:45793750-45794090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 21, 80 | 
| Conread position: | 117-267 | 
| Cow position: | chr6:57680563-57680414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 64, 107 | 
| Conread position: | 117-271 | 
| Cow position: | chr6:60350427-60350274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 62, 12 | 
| Conread position: | 117-273 | 
| Cow position: | chr6:8965961-8966113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 117-300 | 
| Cow position: | chr6:45065147-45064965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 60, 76 | 
| Conread position: | 117-358 | 
| Cow position: | chr6:12964318-12964568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 29, 12 | 
| Conread position: | 117-407 | 
| Cow position: | chr6:3374701-3374412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 15 | 
| Conread position: | 117-407 | 
| Cow position: | chr6:63406543-63406831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 147, 67 | 
| Conread position: | 118-379 | 
| Cow position: | chr6:36652288-36652553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 53, 5 | 
| Conread position: | 122-255 | 
| Cow position: | chr6:60152908-60153043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 71, 55 | 
| Conread position: | 122-489 | 
| Cow position: | chr6:58594229-58593849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 55, 32 | 
| Conread position: | 123-254 | 
| Cow position: | chr6:65852670-65852541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 132 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 123-377 | 
| Cow position: | chr6:9026390-9026648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 56, 187 | 
| Conread position: | 123-401 | 
| Cow position: | chr6:29084353-29084055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 6e-37 | 
| Alignm gaps (pig, cow): | 40, 25 | 
| Conread position: | 123-406 | 
| Cow position: | chr6:31526939-31526658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 138, 65 | 
| Conread position: | 123-407 | 
| Cow position: | chr6:11160136-11159847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 12, 196 | 
| Conread position: | 127-249 | 
| Cow position: | chr6:49398737-49398613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 52, 72 | 
| Conread position: | 127-253 | 
| Cow position: | chr6:57571354-57571482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 127-264 | 
| Cow position: | chr6:19264619-19264482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 54, 73 | 
| Conread position: | 127-268 | 
| Cow position: | chr6:61608388-61608531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 56, 73 | 
| Conread position: | 127-310 | 
| Cow position: | chr6:45160417-45160237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 54, 69 | 
| Conread position: | 127-376 | 
| Cow position: | chr6:7173876-7173621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 128-257 | 
| Cow position: | chr6:48807118-48806987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 26, 21 | 
| Conread position: | 128-265 | 
| Cow position: | chr6:52602365-52602231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 45, 82 | 
| Conread position: | 128-271 | 
| Cow position: | chr6:1907422-1907561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 45, 63 | 
| Conread position: | 128-282 | 
| Cow position: | chr6:48344210-48344363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 45, 71 | 
| Conread position: | 128-299 | 
| Cow position: | chr6:28164676-28164852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 128-312 | 
| Cow position: | chr6:6721982-6722169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 121, 49 | 
| Conread position: | 128-357 | 
| Cow position: | chr6:55842280-55842054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 54, 22 | 
| Conread position: | 128-360 | 
| Cow position: | chr6:27870656-27870891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 45, 18 | 
| Conread position: | 128-363 | 
| Cow position: | chr6:47616731-47616494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 50, 157 | 
| Conread position: | 128-363 | 
| Cow position: | chr6:57164304-57164545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 54, 69 | 
| Conread position: | 128-377 | 
| Cow position: | chr6:7190241-7189989 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 45, 32 | 
| Conread position: | 128-378 | 
| Cow position: | chr6:41152528-41152776 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 51, 123 | 
| Conread position: | 128-381 | 
| Cow position: | chr6:60931016-60930763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 161, 23 | 
| Conread position: | 128-403 | 
| Cow position: | chr6:30315178-30314895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 48, 199 | 
| Conread position: | 128-407 | 
| Cow position: | chr6:23891432-23891716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 45, 187 | 
| Conread position: | 128-407 | 
| Cow position: | chr6:38899876-38899613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 114, 49 | 
| Conread position: | 128-407 | 
| Cow position: | chr6:50822116-50822388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 121, 43 | 
| Conread position: | 128-415 | 
| Cow position: | chr6:41557355-41557635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 46, 109 | 
| Conread position: | 128-482 | 
| Cow position: | chr6:35725973-35726330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 52, 73 | 
| Conread position: | 129-294 | 
| Cow position: | chr6:12543054-12542892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 50, 67 | 
| Conread position: | 129-356 | 
| Cow position: | chr6:20172101-20172334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 48, 195 | 
| Conread position: | 130-300 | 
| Cow position: | chr6:19427333-19427507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 130-379 | 
| Cow position: | chr6:57119059-57118811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 46, 96 | 
| Conread position: | 131-301 | 
| Cow position: | chr6:16634337-16634168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 48, 127 | 
| Conread position: | 132-275 | 
| Cow position: | chr6:15242718-15242858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 128, 54 | 
| Conread position: | 138-574 | 
| Cow position: | chr6:3017339-3017799 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 125, 39 | 
| Conread position: | 145-407 | 
| Cow position: | chr6:32428125-32428392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 32, 74 | 
| Conread position: | 150-407 | 
| Cow position: | chr6:7997921-7998174 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 27, 106 | 
| Conread position: | 161-361 | 
| Cow position: | chr6:59588496-59588294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 18, 121 | 
| Conread position: | 162-406 | 
| Cow position: | chr6:20332571-20332326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 8e-39 | 
| Alignm gaps (pig, cow): | 22, 50 | 
| Conread position: | 171-415 | 
| Cow position: | chr6:57474591-57474828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 116, 85 | 
| Conread position: | 181-408 | 
| Cow position: | chr6:67821757-67821985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 8e-29 | 
| Alignm gaps (pig, cow): | 86, 50 | 
| Conread position: | 211-574 | 
| Cow position: | chr6:31688223-31687853 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 84, 46 | 
| Conread position: | 338-569 | 
| Cow position: | chr6:39292998-39293226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 61, 118 | 
| Conread position: | 406-569 | 
| Cow position: | chr6:45617252-45617096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 410-576 | 
| Cow position: | chr6:3374262-3374086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 77, 42 | 
Show alignments to all cow chromosomes.
