Cow genome map

Conread name: Ss1.1-Thy1-THY010205G02.5

Conread position: 60-294
Cow position: chr6:17313541-17313773 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 37

Conread position: 73-276
Cow position: chr6:17669116-17669322 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 36, 154

Conread position: 85-277
Cow position: chr6:582438-582245 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 5, 113

Conread position: 93-363
Cow position: chr6:30474170-30474444 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 37

Conread position: 101-295
Cow position: chr6:13741547-13741746 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 71, 29

Conread position: 101-340
Cow position: chr6:9219125-9219365 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 25

Conread position: 102-379
Cow position: chr6:63197315-63197032 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 186
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 27

Conread position: 102-405
Cow position: chr6:51071565-51071865 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 214
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 155, 27

Conread position: 102-407
Cow position: chr6:45617583-45617274 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 27

Conread position: 103-379
Cow position: chr6:48573026-48572749 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 13, 28

Conread position: 105-265
Cow position: chr6:55892622-55892790 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 25

Conread position: 105-292
Cow position: chr6:30285550-30285730 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 150, 25

Conread position: 105-297
Cow position: chr6:10254099-10254288 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 135, 25

Conread position: 105-322
Cow position: chr6:7824620-7824841 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 68, 24

Conread position: 105-389
Cow position: chr6:44377124-44377411 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 24

Conread position: 105-415
Cow position: chr6:51191674-51192001 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 61, 24

Conread position: 105-563
Cow position: chr6:27710515-27710981 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 24

Conread position: 108-275
Cow position: chr6:38641352-38641521 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 73, 88

Conread position: 108-318
Cow position: chr6:34196294-34196080 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 21, 95

Conread position: 108-475
Cow position: chr6:29239798-29240165 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 237
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 73, 28

Conread position: 108-574
Cow position: chr6:62326999-62327458 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 92

Conread position: 109-273
Cow position: chr6:8318309-8318138 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 109-279
Cow position: chr6:28080042-28079868 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 109-300
Cow position: chr6:44372088-44371893 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 40

Conread position: 109-300
Cow position: chr6:53731381-53731574 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 14

Conread position: 109-357
Cow position: chr6:24223305-24223049 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 211

Conread position: 109-358
Cow position: chr6:6995091-6994846 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 148, 68

Conread position: 109-367
Cow position: chr6:34549266-34549522 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 72

Conread position: 109-374
Cow position: chr6:55475101-55475381 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 194
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 183

Conread position: 109-379
Cow position: chr6:56376495-56376218 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 176

Conread position: 109-388
Cow position: chr6:6188108-6188360 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 22, 69

Conread position: 109-403
Cow position: chr6:55936121-55935822 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 227
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 46

Conread position: 109-404
Cow position: chr6:29077584-29077889 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 106

Conread position: 109-407
Cow position: chr6:10423029-10423326 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 22, 101

Conread position: 109-407
Cow position: chr6:54032107-54032386 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 146, 52

Conread position: 109-414
Cow position: chr6:11383115-11382804 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 121, 68

Conread position: 109-430
Cow position: chr6:57686015-57686332 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 20, 79

Conread position: 109-436
Cow position: chr6:13592565-13592897 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 228
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 22, 48

Conread position: 110-254
Cow position: chr6:47327211-47327060 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 110-278
Cow position: chr6:37739042-37739217 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 21, 149

Conread position: 110-299
Cow position: chr6:12387468-12387276 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 110

Conread position: 110-450
Cow position: chr6:45793750-45794090 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 232
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 80

Conread position: 117-267
Cow position: chr6:57680563-57680414 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 107

Conread position: 117-271
Cow position: chr6:60350427-60350274 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 62, 12

Conread position: 117-273
Cow position: chr6:8965961-8966113 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 117-300
Cow position: chr6:45065147-45064965 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 76

Conread position: 117-358
Cow position: chr6:12964318-12964568 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 12

Conread position: 117-407
Cow position: chr6:3374701-3374412 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 15

Conread position: 117-407
Cow position: chr6:63406543-63406831 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 147, 67

Conread position: 118-379
Cow position: chr6:36652288-36652553 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 180
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 53, 5

Conread position: 122-255
Cow position: chr6:60152908-60153043 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 55

Conread position: 122-489
Cow position: chr6:58594229-58593849 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 264
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 55, 32

Conread position: 123-254
Cow position: chr6:65852670-65852541 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 123-377
Cow position: chr6:9026390-9026648 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 187

Conread position: 123-401
Cow position: chr6:29084353-29084055 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 40, 25

Conread position: 123-406
Cow position: chr6:31526939-31526658 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 65

Conread position: 123-407
Cow position: chr6:11160136-11159847 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 12, 196

Conread position: 127-249
Cow position: chr6:49398737-49398613 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 72

Conread position: 127-253
Cow position: chr6:57571354-57571482 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 127-264
Cow position: chr6:19264619-19264482 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 73

Conread position: 127-268
Cow position: chr6:61608388-61608531 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 56, 73

Conread position: 127-310
Cow position: chr6:45160417-45160237 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 69

Conread position: 127-376
Cow position: chr6:7173876-7173621 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 166
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 128-257
Cow position: chr6:48807118-48806987 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 21

Conread position: 128-265
Cow position: chr6:52602365-52602231 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 82

Conread position: 128-271
Cow position: chr6:1907422-1907561 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 63

Conread position: 128-282
Cow position: chr6:48344210-48344363 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 71

Conread position: 128-299
Cow position: chr6:28164676-28164852 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 128-312
Cow position: chr6:6721982-6722169 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 146
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 121, 49

Conread position: 128-357
Cow position: chr6:55842280-55842054 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 22

Conread position: 128-360
Cow position: chr6:27870656-27870891 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 18

Conread position: 128-363
Cow position: chr6:47616731-47616494 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 50, 157

Conread position: 128-363
Cow position: chr6:57164304-57164545 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 69

Conread position: 128-377
Cow position: chr6:7190241-7189989 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 167
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 32

Conread position: 128-378
Cow position: chr6:41152528-41152776 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 123

Conread position: 128-381
Cow position: chr6:60931016-60930763 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 161, 23

Conread position: 128-403
Cow position: chr6:30315178-30314895 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 188
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 199

Conread position: 128-407
Cow position: chr6:23891432-23891716 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 45, 187

Conread position: 128-407
Cow position: chr6:38899876-38899613 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 114, 49

Conread position: 128-407
Cow position: chr6:50822116-50822388 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 121, 43

Conread position: 128-415
Cow position: chr6:41557355-41557635 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 46, 109

Conread position: 128-482
Cow position: chr6:35725973-35726330 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 234
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 73

Conread position: 129-294
Cow position: chr6:12543054-12542892 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 67

Conread position: 129-356
Cow position: chr6:20172101-20172334 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 48, 195

Conread position: 130-300
Cow position: chr6:19427333-19427507 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 130-379
Cow position: chr6:57119059-57118811 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 46, 96

Conread position: 131-301
Cow position: chr6:16634337-16634168 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 127

Conread position: 132-275
Cow position: chr6:15242718-15242858 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 128, 54

Conread position: 138-574
Cow position: chr6:3017339-3017799 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 323
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 125, 39

Conread position: 145-407
Cow position: chr6:32428125-32428392 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 32, 74

Conread position: 150-407
Cow position: chr6:7997921-7998174 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 27, 106

Conread position: 161-361
Cow position: chr6:59588496-59588294 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 18, 121

Conread position: 162-406
Cow position: chr6:20332571-20332326 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 185
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 22, 50

Conread position: 171-415
Cow position: chr6:57474591-57474828 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 116, 85

Conread position: 181-408
Cow position: chr6:67821757-67821985 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 166
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 86, 50

Conread position: 211-574
Cow position: chr6:31688223-31687853 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 252
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 84, 46

Conread position: 338-569
Cow position: chr6:39292998-39293226 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 61, 118

Conread position: 406-569
Cow position: chr6:45617252-45617096 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 410-576
Cow position: chr6:3374262-3374086 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 77, 42

Show alignments to all cow chromosomes.