Cow genome map


           Conread name:
           Ss1.1-Thy1-THY010205H02.5.5
        

               Conread position:
               1-154
               

               Cow position:
               chr1:51259566-51259415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               139
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               141-224
               

               Cow position:
               chr1:51259113-51259030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               84
               

               Alignm identity:
               78
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               417-622
               

               Cow position:
               chr1:51258317-51258112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               619-697
               

               Cow position:
               chr1:51258016-51257938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               79
               

               Alignm identity:
               74
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               743-877
               

               Cow position:
               chr1:51255807-51255673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               121
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               875-965
               

               Cow position:
               chr1:51255071-51254981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               91
               

               Alignm identity:
               89
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               962-1058
               

               Cow position:
               chr1:51254882-51254786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               97
               

               Alignm identity:
               90
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1056-1189
               

               Cow position:
               chr1:51254613-51254480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               125
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1186-1285
               

               Cow position:
               chr1:51254346-51254247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               92
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1277-2580
               

               Cow position:
               chr1:51254167-51252875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1334
               

               Alignm identity:
               1062
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               483, 199
               
Show alignments to all cow chromosomes.