Cow genome map
| Conread name: | Ss1.1-Thy1-THY010206D08.5 |
| Conread position: | 1-109 |
| Cow position: | chr12:6775990-6775880 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 107-195 |
| Cow position: | chr12:6751275-6751187 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-363 |
| Cow position: | chr12:6750076-6749910 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 352-491 |
| Cow position: | chr12:6749747-6749608 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 129 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 489-629 |
| Cow position: | chr12:6747176-6747035 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 624-707 |
| Cow position: | chr12:6744391-6744308 (view UCSC Genome Browser custom track) |
| Alignm length: | 84 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 672-877 |
| Cow position: | chr12:6742146-6741940 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 871-1016 |
| Cow position: | chr12:6740351-6740206 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 139 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1014-1112 |
| Cow position: | chr12:6737353-6737255 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1111-1309 |
| Cow position: | chr12:6731868-6731670 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1306-1386 |
| Cow position: | chr12:6729589-6729509 (view UCSC Genome Browser custom track) |
| Alignm length: | 81 |
| Alignm identity: | 75 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1385-1501 |
| Cow position: | chr12:6728046-6727930 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 113 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1500-1638 |
| Cow position: | chr12:6726892-6726754 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 128 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1634-1760 |
| Cow position: | chr12:6719204-6719078 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1758-1887 |
| Cow position: | chr12:6713367-6713238 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 118 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1885-2705 |
| Cow position: | chr12:6711185-6710364 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 658 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 172 |
| Conread position: | 2661-2829 |
| Cow position: | chr12:6710354-6710186 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 137 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.