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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01A040044.5
        

               
Conread position:
               
845-1076
               

               
Cow position:
               
chr1:86682657-86682430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
856-1047
               

               
Cow position:
               
chr1:4414292-4414104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
147, 101
               

               
Conread position:
               
857-1074
               

               
Cow position:
               
chr1:61005638-61005431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
122, 10
               

               
Conread position:
               
865-1075
               

               
Cow position:
               
chr1:78066614-78066405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
866-1029
               

               
Cow position:
               
chr1:101634630-101634799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 20
               

               
Conread position:
               
866-1056
               

               
Cow position:
               
chr1:45288946-45288756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 61
               

               
Conread position:
               
866-1085
               

               
Cow position:
               
chr1:3965765-3965975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
157, 58
               

               
Conread position:
               
867-1000
               

               
Cow position:
               
chr1:44155177-44155308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 23
               

               
Conread position:
               
867-1001
               

               
Cow position:
               
chr1:41695526-41695660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
867-1016
               

               
Cow position:
               
chr1:91370082-91369935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
116, 56
               

               
Conread position:
               
867-1046
               

               
Cow position:
               
chr1:81563663-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 166
               

               
Conread position:
               
867-1047
               

               
Cow position:
               
chr1:12978607-12978787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
48, 42
               

               
Conread position:
               
867-1047
               

               
Cow position:
               
chr1:64678622-64678800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
112, 45
               

               
Conread position:
               
867-1047
               

               
Cow position:
               
chr1:100393240-100393058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 58
               

               
Conread position:
               
867-1049
               

               
Cow position:
               
chr1:89230303-89230124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
152, 19
               

               
Conread position:
               
867-1050
               

               
Cow position:
               
chr1:81355782-81355595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 166
               

               
Conread position:
               
867-1054
               

               
Cow position:
               
chr1:30189073-30189264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
867-1054
               

               
Cow position:
               
chr1:38401721-38401911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 165
               

               
Conread position:
               
867-1054
               

               
Cow position:
               
chr1:52467228-52467415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
133, 114
               

               
Conread position:
               
867-1054
               

               
Cow position:
               
chr1:64572440-64572627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
117, 49
               

               
Conread position:
               
867-1054
               

               
Cow position:
               
chr1:82884463-82884283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
867-1058
               

               
Cow position:
               
chr1:40599970-40600157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
867-1058
               

               
Cow position:
               
chr1:43822327-43822515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
867-1061
               

               
Cow position:
               
chr1:85028879-85029073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
867-1061
               

               
Cow position:
               
chr1:89349889-89350084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
57, 49
               

               
Conread position:
               
867-1061
               

               
Cow position:
               
chr1:96277127-96276932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
104, 49
               

               
Conread position:
               
867-1061
               

               
Cow position:
               
chr1:102306216-102306027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
867-1062
               

               
Cow position:
               
chr1:54478251-54478449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
40, 164
               

               
Conread position:
               
867-1062
               

               
Cow position:
               
chr1:70538534-70538731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
867-1067
               

               
Cow position:
               
chr1:88652557-88652761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
109, 28
               

               
Conread position:
               
867-1068
               

               
Cow position:
               
chr1:17196703-17196500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
867-1071
               

               
Cow position:
               
chr1:41696985-41697185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
189, 49
               

               
Conread position:
               
867-1071
               

               
Cow position:
               
chr1:78838725-78838922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
867-1072
               

               
Cow position:
               
chr1:8129044-8128839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
867-1072
               

               
Cow position:
               
chr1:57575832-57575633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
867-1072
               

               
Cow position:
               
chr1:83583008-83582805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 15
               

               
Conread position:
               
867-1073
               

               
Cow position:
               
chr1:7023047-7023252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
114, 20
               

               
Conread position:
               
867-1074
               

               
Cow position:
               
chr1:1956407-1956203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
42, 60
               

               
Conread position:
               
867-1074
               

               
Cow position:
               
chr1:61012236-61012445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
54, 187
               

               
Conread position:
               
867-1074
               

               
Cow position:
               
chr1:67688653-67688451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
17, 57
               

               
Conread position:
               
867-1074
               

               
Cow position:
               
chr1:68817872-68817667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
109, 56
               

               
Conread position:
               
867-1074
               

               
Cow position:
               
chr1:89509996-89509789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 28
               

               
Conread position:
               
867-1075
               

               
Cow position:
               
chr1:62036730-62036936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
60, 20
               

               
Conread position:
               
867-1075
               

               
Cow position:
               
chr1:82513429-82513221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
114, 187
               

               
Conread position:
               
867-1076
               

               
Cow position:
               
chr1:22728978-22729188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
46, 192
               

               
Conread position:
               
867-1076
               

               
Cow position:
               
chr1:25281734-25281523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
867-1076
               

               
Cow position:
               
chr1:37322075-37321868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
867-1076
               

               
Cow position:
               
chr1:82936665-82936465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
114, 32
               

               
Conread position:
               
867-1076
               

               
Cow position:
               
chr1:84812016-84811804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
867-1076
               

               
Cow position:
               
chr1:85647855-85647648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
49, 59
               

               
Conread position:
               
867-1076
               

               
Cow position:
               
chr1:95499567-95499363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
111, 42
               

               
Conread position:
               
867-1076
               

               
Cow position:
               
chr1:96947790-96947587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
867-1076
               

               
Cow position:
               
chr1:101860562-101860351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
867-1077
               

               
Cow position:
               
chr1:84255690-84255904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:13637738-13637526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:24133132-24132924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
204, 28
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:33331161-33330955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
152, 44
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:55705323-55705105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
59, 112
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:56618724-56618517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:58754869-58754658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:71079031-71078823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:75744787-75745002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
117, 52
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:78096851-78097065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
114, 211
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:79640364-79640150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 211
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:83072364-83072581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:89342068-89341842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
61, 175
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:89388264-89388482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
97, 196
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:91023541-91023327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 42
               

               
Conread position:
               
867-1081
               

               
Cow position:
               
chr1:91874982-91874778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
117, 58
               

               
Conread position:
               
867-1082
               

               
Cow position:
               
chr1:41047377-41047165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
867-1082
               

               
Cow position:
               
chr1:69678402-69678186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
54, 59
               

               
Conread position:
               
867-1082
               

               
Cow position:
               
chr1:89448824-89449038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
114, 199
               

               
Conread position:
               
867-1084
               

               
Cow position:
               
chr1:81569104-81568887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
867-1086
               

               
Cow position:
               
chr1:61884840-61885058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
867-1086
               

               
Cow position:
               
chr1:98511855-98512069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
867-1087
               

               
Cow position:
               
chr1:261558-261324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
49, 117
               

               
Conread position:
               
867-1087
               

               
Cow position:
               
chr1:42175651-42175867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 42
               

               
Conread position:
               
867-1087
               

               
Cow position:
               
chr1:74822376-74822593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
867-1087
               

               
Cow position:
               
chr1:78857395-78857187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
111, 37
               

               
Conread position:
               
867-1087
               

               
Cow position:
               
chr1:86110804-86110603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
152, 40
               

               
Conread position:
               
867-1087
               

               
Cow position:
               
chr1:98551643-98551863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
49, 177
               

               
Conread position:
               
867-1088
               

               
Cow position:
               
chr1:3882538-3882311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
867-1088
               

               
Cow position:
               
chr1:45553317-45553098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
48, 117
               

               
Conread position:
               
867-1088
               

               
Cow position:
               
chr1:50991861-50992081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
867-1088
               

               
Cow position:
               
chr1:81580096-81580322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 165
               

               
Conread position:
               
867-1088
               

               
Cow position:
               
chr1:85162623-85162402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
116, 165
               

               
Conread position:
               
867-1088
               

               
Cow position:
               
chr1:101834750-101834957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
173, 14
               

               
Conread position:
               
867-1089
               

               
Cow position:
               
chr1:48769730-48769945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
867-1092
               

               
Cow position:
               
chr1:47233552-47233331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
111, 42
               

               
Conread position:
               
867-1094
               

               
Cow position:
               
chr1:100800283-100800501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
104, 33
               

               
Conread position:
               
867-1096
               

               
Cow position:
               
chr1:48105507-48105278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
49, 88
               

               
Conread position:
               
867-1099
               

               
Cow position:
               
chr1:56225393-56225627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 46
               

               
Conread position:
               
867-1103
               

               
Cow position:
               
chr1:39510128-39509894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
867-1108
               

               
Cow position:
               
chr1:81613316-81613558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
114, 31
               

               
Conread position:
               
867-1112
               

               
Cow position:
               
chr1:18780409-18780156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
867-1117
               

               
Cow position:
               
chr1:52994947-52995200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
40, 193
               

               
Conread position:
               
868-1071
               

               
Cow position:
               
chr1:95176863-95177064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
51, 130
               

               
Conread position:
               
868-1073
               

               
Cow position:
               
chr1:52039560-52039767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
54, 125
               

               
Conread position:
               
868-1081
               

               
Cow position:
               
chr1:80841580-80841786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 39
               

               
Conread position:
               
868-1082
               

               
Cow position:
               
chr1:1981187-1980971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
109, 47
               

               
Conread position:
               
868-1087
               

               
Cow position:
               
chr1:53671813-53671608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
868-1088
               

               
Cow position:
               
chr1:37886882-37886667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
868-1092
               

               
Cow position:
               
chr1:81290431-81290655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
50, 124
               

               
Conread position:
               
870-1021
               

               
Cow position:
               
chr1:61560797-61560644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
870-1040
               

               
Cow position:
               
chr1:20204958-20205125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
870-1047
               

               
Cow position:
               
chr1:99793473-99793652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
870-1061
               

               
Cow position:
               
chr1:89158200-89158006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
44, 159
               

               
Conread position:
               
870-1067
               

               
Cow position:
               
chr1:35671471-35671662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
12, 50
               

               
Conread position:
               
870-1074
               

               
Cow position:
               
chr1:71295376-71295159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
53, 25
               

               
Conread position:
               
870-1074
               

               
Cow position:
               
chr1:89381204-89381405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
111, 53
               

               
Conread position:
               
870-1075
               

               
Cow position:
               
chr1:23998997-23998801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
870-1075
               

               
Cow position:
               
chr1:37124055-37124266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
870-1075
               

               
Cow position:
               
chr1:98030844-98031055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
42, 163
               

               
Conread position:
               
870-1076
               

               
Cow position:
               
chr1:12464736-12464531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
113, 38
               

               
Conread position:
               
870-1076
               

               
Cow position:
               
chr1:20104198-20104399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
114, 38
               

               
Conread position:
               
870-1081
               

               
Cow position:
               
chr1:78810969-78811177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
870-1082
               

               
Cow position:
               
chr1:85550148-85549935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 49
               

               
Conread position:
               
870-1084
               

               
Cow position:
               
chr1:70828829-70829045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
46, 150
               

               
Conread position:
               
870-1088
               

               
Cow position:
               
chr1:68672670-68672457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
870-1088
               

               
Cow position:
               
chr1:77232644-77232433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
870-1102
               

               
Cow position:
               
chr1:69264742-69264969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
114, 11
               

               
Conread position:
               
871-1021
               

               
Cow position:
               
chr1:6788355-6788204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
36, 53
               

               
Conread position:
               
871-1047
               

               
Cow position:
               
chr1:80900048-80900224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
44, 38
               

               
Conread position:
               
871-1074
               

               
Cow position:
               
chr1:25383594-25383800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
871-1075
               

               
Cow position:
               
chr1:92369663-92369867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 156
               

               
Conread position:
               
871-1076
               

               
Cow position:
               
chr1:45223510-45223715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
871-1082
               

               
Cow position:
               
chr1:34771573-34771364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
871-1088
               

               
Cow position:
               
chr1:90868510-90868296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
110, 36
               

               
Conread position:
               
872-1061
               

               
Cow position:
               
chr1:65028463-65028651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
110, 179
               

               
Conread position:
               
872-1076
               

               
Cow position:
               
chr1:43389119-43388920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
872-1076
               

               
Cow position:
               
chr1:43505456-43505661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
45, 189
               

               
Conread position:
               
872-1081
               

               
Cow position:
               
chr1:197076-196867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
109, 182
               

               
Conread position:
               
872-1087
               

               
Cow position:
               
chr1:53458628-53458839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
873-1074
               

               
Cow position:
               
chr1:46143530-46143329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
192, 46
               

               
Conread position:
               
873-1074
               

               
Cow position:
               
chr1:54206886-54206684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
873-1081
               

               
Cow position:
               
chr1:68855095-68855305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 91
               

               
Conread position:
               
874-1088
               

               
Cow position:
               
chr1:10716428-10716641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 74
               

               
Conread position:
               
875-1074
               

               
Cow position:
               
chr1:97090258-97090459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
32, 50
               

               
Conread position:
               
875-1081
               

               
Cow position:
               
chr1:54267999-54267801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
144, 26
               

               
Conread position:
               
875-1088
               

               
Cow position:
               
chr1:86912373-86912583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 50
               

               
Conread position:
               
875-1088
               

               
Cow position:
               
chr1:95072264-95072479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
51, 41
               

               
Conread position:
               
875-1111
               

               
Cow position:
               
chr1:98575980-98576219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
110, 57
               

               
Conread position:
               
876-1020
               

               
Cow position:
               
chr1:89497889-89498031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
39, 66
               

               
Conread position:
               
876-1068
               

               
Cow position:
               
chr1:79844402-79844591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 59
               

               
Conread position:
               
876-1069
               

               
Cow position:
               
chr1:30136419-30136225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 48
               

               
Conread position:
               
876-1107
               

               
Cow position:
               
chr1:48214226-48213993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
34, 111
               

               
Conread position:
               
877-1088
               

               
Cow position:
               
chr1:71253616-71253413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
878-1061
               

               
Cow position:
               
chr1:48206598-48206417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
38, 97
               

               
Conread position:
               
878-1087
               

               
Cow position:
               
chr1:61742032-61741824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
119, 105
               

               
Conread position:
               
881-1073
               

               
Cow position:
               
chr1:5597269-5597080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 34
               

               
Conread position:
               
881-1074
               

               
Cow position:
               
chr1:64113854-64113661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
35, 171
               

               
Conread position:
               
881-1076
               

               
Cow position:
               
chr1:79146881-79146685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
881-1076
               

               
Cow position:
               
chr1:80584371-80584561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
881-1098
               

               
Cow position:
               
chr1:79003914-79004128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
97, 117
               

               
Conread position:
               
882-1062
               

               
Cow position:
               
chr1:3167133-3166956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
882-1066
               

               
Cow position:
               
chr1:4581391-4581209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
882-1076
               

               
Cow position:
               
chr1:93043961-93044149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
882-1081
               

               
Cow position:
               
chr1:41056618-41056819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
102, 48
               

               
Conread position:
               
882-1081
               

               
Cow position:
               
chr1:87197757-87197959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
33, 199
               

               
Conread position:
               
883-1018
               

               
Cow position:
               
chr1:87440407-87440543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 125
               

               
Conread position:
               
886-1085
               

               
Cow position:
               
chr1:102529911-102529716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
887-1072
               

               
Cow position:
               
chr1:22827101-22827285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 164
               

               
Conread position:
               
887-1081
               

               
Cow position:
               
chr1:81481438-81481246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
97, 172
               

               
Conread position:
               
887-1087
               

               
Cow position:
               
chr1:92197399-92197597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
888-1061
               

               
Cow position:
               
chr1:92590142-92590310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
93, 76
               

               
Conread position:
               
891-1088
               

               
Cow position:
               
chr1:816461-816267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
900-1087
               

               
Cow position:
               
chr1:62997756-62997940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
902-1088
               

               
Cow position:
               
chr1:8670733-8670919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
82, 13
               

               
Conread position:
               
906-1084
               

               
Cow position:
               
chr1:67654356-67654180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
78, 17
               

               
Conread position:
               
913-1093
               

               
Cow position:
               
chr1:82556439-82556266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
915-1081
               

               
Cow position:
               
chr1:83025190-83025026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 10
               

               
Conread position:
               
916-1081
               

               
Cow position:
               
chr1:41027048-41027211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
917-1061
               

               
Cow position:
               
chr1:31855273-31855128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
918-1076
               

               
Cow position:
               
chr1:42887302-42887145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 132
               

               
Conread position:
               
918-1081
               

               
Cow position:
               
chr1:19962029-19962188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
927-1076
               

               
Cow position:
               
chr1:45315652-45315504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 123
               

               
Conread position:
               
929-1087
               

               
Cow position:
               
chr1:759432-759274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
55, 101
               
Show alignments to all cow chromosomes.