Cow genome map

Conread name: Ss1.1-Tra1-TCH01A040044.5

Conread position: 857-1092
Cow position: chr12:9143257-9143493 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 13, 37

Conread position: 858-1085
Cow position: chr12:18020730-18020957 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 123, 38

Conread position: 861-1081
Cow position: chr12:18388414-18388191 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 57

Conread position: 867-1002
Cow position: chr12:26317344-26317481 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 50, 0

Conread position: 867-1004
Cow position: chr12:18421041-18420904 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 14

Conread position: 867-1021
Cow position: chr12:18023552-18023390 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 47, 15

Conread position: 867-1034
Cow position: chr12:34673459-34673292 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 32

Conread position: 867-1039
Cow position: chr12:17080142-17080313 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 19

Conread position: 867-1046
Cow position: chr12:3092691-3092520 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 39

Conread position: 867-1047
Cow position: chr12:18518548-18518734 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 45, 0

Conread position: 867-1054
Cow position: chr12:30170550-30170736 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 109, 58

Conread position: 867-1061
Cow position: chr12:39465458-39465654 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 867-1063
Cow position: chr12:17001144-17001335 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 114, 48

Conread position: 867-1066
Cow position: chr12:28582622-28582429 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 152, 58

Conread position: 867-1067
Cow position: chr12:30210364-30210564 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 135
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 117, 32

Conread position: 867-1069
Cow position: chr12:19691352-19691151 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 117

Conread position: 867-1071
Cow position: chr12:41216002-41215801 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 141
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 38, 120

Conread position: 867-1072
Cow position: chr12:24116481-24116278 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 54, 41

Conread position: 867-1074
Cow position: chr12:6485331-6485126 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 97

Conread position: 867-1075
Cow position: chr12:7884800-7884592 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 114, 49

Conread position: 867-1075
Cow position: chr12:11836113-11836325 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 53, 161

Conread position: 867-1075
Cow position: chr12:27037569-27037361 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 114, 42

Conread position: 867-1076
Cow position: chr12:17031497-17031703 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 58

Conread position: 867-1076
Cow position: chr12:17269681-17269892 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 46, 0

Conread position: 867-1076
Cow position: chr12:18123562-18123757 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 114, 48

Conread position: 867-1081
Cow position: chr12:11056756-11056966 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 164
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 114, 49

Conread position: 867-1081
Cow position: chr12:19261080-19261290 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 114, 20

Conread position: 867-1081
Cow position: chr12:20777041-20776834 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 867-1081
Cow position: chr12:30805736-30805952 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 116, 49

Conread position: 867-1081
Cow position: chr12:37770758-37770962 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 51, 28

Conread position: 867-1082
Cow position: chr12:5632000-5631788 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 59, 115

Conread position: 867-1082
Cow position: chr12:6241194-6241416 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 26

Conread position: 867-1082
Cow position: chr12:37170061-37169852 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 173
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 114, 28

Conread position: 867-1083
Cow position: chr12:36544768-36544546 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 39, 177

Conread position: 867-1085
Cow position: chr12:2813109-2813324 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 46, 13

Conread position: 867-1085
Cow position: chr12:16670147-16670364 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 57, 49

Conread position: 867-1086
Cow position: chr12:26217944-26217724 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 43, 52

Conread position: 867-1086
Cow position: chr12:39486309-39486518 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 114, 14

Conread position: 867-1087
Cow position: chr12:15703621-15703399 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 51, 163

Conread position: 867-1087
Cow position: chr12:24662998-24663215 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 117, 34

Conread position: 867-1087
Cow position: chr12:32169423-32169640 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 114, 19

Conread position: 867-1088
Cow position: chr12:29770691-29770479 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 172
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 152, 42

Conread position: 867-1088
Cow position: chr12:31959769-31959980 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 151, 46

Conread position: 867-1088
Cow position: chr12:32714926-32715143 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 114, 91

Conread position: 867-1089
Cow position: chr12:4341858-4341642 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 114, 40

Conread position: 867-1095
Cow position: chr12:42685065-42684837 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 117, 211

Conread position: 867-1110
Cow position: chr12:19507513-19507760 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 54, 235

Conread position: 867-1119
Cow position: chr12:35669591-35669331 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 178
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 102, 219

Conread position: 867-1142
Cow position: chr12:35378083-35378359 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 185
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 72, 24

Conread position: 868-1075
Cow position: chr12:24032380-24032585 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 116, 40

Conread position: 868-1087
Cow position: chr12:11659808-11660019 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 47, 140

Conread position: 869-1081
Cow position: chr12:15122206-15122420 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 66

Conread position: 870-1001
Cow position: chr12:6164140-6164007 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 870-1075
Cow position: chr12:44203104-44202898 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 21, 99

Conread position: 870-1075
Cow position: chr12:44622239-44622438 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 55, 38

Conread position: 870-1075
Cow position: chr12:46120945-46120744 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 109, 54

Conread position: 870-1081
Cow position: chr12:30745600-30745811 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 42, 107

Conread position: 870-1082
Cow position: chr12:19502539-19502333 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 113, 55

Conread position: 870-1087
Cow position: chr12:42879580-42879794 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 111, 11

Conread position: 870-1092
Cow position: chr12:7000719-7000500 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 111, 47

Conread position: 870-1104
Cow position: chr12:45820483-45820246 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 111, 167

Conread position: 870-1119
Cow position: chr12:5905939-5906190 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 111, 205

Conread position: 871-1076
Cow position: chr12:5714514-5714717 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 110, 136

Conread position: 872-1071
Cow position: chr12:30605278-30605081 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 112, 65

Conread position: 872-1074
Cow position: chr12:25917382-25917189 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 100, 31

Conread position: 872-1081
Cow position: chr12:25561257-25561461 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 155
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 53, 0

Conread position: 872-1086
Cow position: chr12:33851245-33851458 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 54, 116

Conread position: 873-1081
Cow position: chr12:9766992-9766783 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 48, 187

Conread position: 874-1032
Cow position: chr12:6469174-6469012 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 874-1047
Cow position: chr12:18577727-18577901 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 137
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 107, 49

Conread position: 874-1081
Cow position: chr12:18583104-18582901 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 59, 0

Conread position: 875-1076
Cow position: chr12:7902913-7902712 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 101, 33

Conread position: 875-1081
Cow position: chr12:3371654-3371452 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 106, 0

Conread position: 875-1081
Cow position: chr12:15089403-15089611 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 45, 134

Conread position: 876-1088
Cow position: chr12:30819130-30819342 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 12, 53

Conread position: 881-1071
Cow position: chr12:17879408-17879217 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 144
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 35, 127

Conread position: 881-1113
Cow position: chr12:33319772-33319540 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 103, 52

Conread position: 882-1073
Cow position: chr12:15429700-15429510 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 102, 34

Conread position: 885-1071
Cow position: chr12:5554436-5554249 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 887-1081
Cow position: chr12:37514381-37514190 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 94, 163

Conread position: 894-1076
Cow position: chr12:26777283-26777103 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 21, 107

Conread position: 899-1081
Cow position: chr12:33948816-33948996 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 85, 160

Conread position: 904-1061
Cow position: chr12:23644887-23644728 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 908-1069
Cow position: chr12:17252278-17252116 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 6, 65

Conread position: 908-1071
Cow position: chr12:45092367-45092533 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 910-1076
Cow position: chr12:26151537-26151370 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 137, 0

Conread position: 913-1047
Cow position: chr12:15641184-15641046 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 915-1081
Cow position: chr12:46464138-46463976 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 69, 8

Conread position: 916-1076
Cow position: chr12:12232812-12232970 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 90, 65

Conread position: 920-1075
Cow position: chr12:19274464-19274307 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 127, 105

Conread position: 922-1087
Cow position: chr12:36261624-36261789 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 157

Conread position: 925-1073
Cow position: chr12:15260701-15260850 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 56, 102

Show alignments to all cow chromosomes.