Cow genome map

Conread name: Ss1.1-Tra1-TCH01A040044.5

Conread position: 864-1047
Cow position: chr20:6358575-6358762 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 68

Conread position: 866-1076
Cow position: chr20:8556308-8556098 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 118, 72

Conread position: 867-1004
Cow position: chr20:39019657-39019795 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 62, 42

Conread position: 867-1021
Cow position: chr20:3606999-3606845 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 867-1046
Cow position: chr20:39212618-39212440 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 52

Conread position: 867-1047
Cow position: chr20:14806849-14807029 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 114, 56

Conread position: 867-1047
Cow position: chr20:21999961-22000144 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 99, 0

Conread position: 867-1047
Cow position: chr20:28441292-28441469 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 114, 54

Conread position: 867-1047
Cow position: chr20:39266995-39266816 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 114, 72

Conread position: 867-1051
Cow position: chr20:17100324-17100508 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 867-1054
Cow position: chr20:19363400-19363214 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 55, 14

Conread position: 867-1054
Cow position: chr20:20203179-20203366 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 46, 58

Conread position: 867-1054
Cow position: chr20:35710135-35710325 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 42, 14

Conread position: 867-1055
Cow position: chr20:23792573-23792754 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 114, 35

Conread position: 867-1058
Cow position: chr20:38817969-38818155 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 180, 56

Conread position: 867-1061
Cow position: chr20:4787050-4786862 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 47, 115

Conread position: 867-1061
Cow position: chr20:9412452-9412644 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 111, 24

Conread position: 867-1062
Cow position: chr20:21204323-21204510 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 34

Conread position: 867-1066
Cow position: chr20:40511795-40511595 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 74

Conread position: 867-1067
Cow position: chr20:7438890-7438689 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 136
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 867-1071
Cow position: chr20:398341-398141 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 114, 24

Conread position: 867-1072
Cow position: chr20:10208769-10208973 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 48, 37

Conread position: 867-1074
Cow position: chr20:11542320-11542114 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 47, 73

Conread position: 867-1075
Cow position: chr20:5702685-5702896 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 57

Conread position: 867-1075
Cow position: chr20:38768493-38768293 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 152, 42

Conread position: 867-1076
Cow position: chr20:15548937-15548717 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 50

Conread position: 867-1081
Cow position: chr20:3255011-3255210 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 114, 14

Conread position: 867-1081
Cow position: chr20:8547028-8547240 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 53, 132

Conread position: 867-1081
Cow position: chr20:11550329-11550542 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 62, 115

Conread position: 867-1081
Cow position: chr20:12581993-12581780 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 114, 183

Conread position: 867-1081
Cow position: chr20:18379339-18379553 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 52, 147

Conread position: 867-1081
Cow position: chr20:24069767-24069981 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 111, 179

Conread position: 867-1081
Cow position: chr20:28982662-28982874 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 53, 131

Conread position: 867-1081
Cow position: chr20:32463558-32463349 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 867-1082
Cow position: chr20:22484826-22485036 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 147
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 117, 40

Conread position: 867-1086
Cow position: chr20:7426231-7426015 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 114, 36

Conread position: 867-1086
Cow position: chr20:12420656-12420436 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 114, 41

Conread position: 867-1086
Cow position: chr20:39398449-39398661 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 114, 48

Conread position: 867-1087
Cow position: chr20:5814532-5814745 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 867-1087
Cow position: chr20:5998709-5998481 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 114, 49

Conread position: 867-1087
Cow position: chr20:8578211-8578427 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 53

Conread position: 867-1087
Cow position: chr20:22030283-22030500 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 114, 164

Conread position: 867-1087
Cow position: chr20:40157864-40158079 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 114, 47

Conread position: 867-1088
Cow position: chr20:5636447-5636662 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 115, 42

Conread position: 867-1088
Cow position: chr20:5826904-5827126 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 40, 91

Conread position: 867-1088
Cow position: chr20:23846706-23846482 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 33, 59

Conread position: 867-1088
Cow position: chr20:38514745-38514962 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 114, 37

Conread position: 867-1090
Cow position: chr20:26996497-26996713 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 111, 39

Conread position: 867-1093
Cow position: chr20:18320828-18320609 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 867-1103
Cow position: chr20:21428123-21428358 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 49

Conread position: 867-1160
Cow position: chr20:28067463-28067163 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 174
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 18

Conread position: 868-1039
Cow position: chr20:8307983-8308151 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 868-1066
Cow position: chr20:30887997-30888194 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 94, 51

Conread position: 868-1075
Cow position: chr20:21345392-21345601 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 45

Conread position: 868-1075
Cow position: chr20:36779764-36779560 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 113, 54

Conread position: 869-1024
Cow position: chr20:31740256-31740100 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 114, 0

Conread position: 870-1047
Cow position: chr20:22265279-22265110 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 38

Conread position: 870-1067
Cow position: chr20:19459701-19459505 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 54

Conread position: 870-1075
Cow position: chr20:10772170-10772375 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 122, 130

Conread position: 870-1076
Cow position: chr20:6240555-6240350 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 54

Conread position: 870-1087
Cow position: chr20:38089878-38090092 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 114, 46

Conread position: 870-1089
Cow position: chr20:5078590-5078810 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 150
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 56, 206

Conread position: 871-1047
Cow position: chr20:25162161-25161983 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 53, 44

Conread position: 871-1054
Cow position: chr20:13269594-13269764 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 871-1081
Cow position: chr20:7738259-7738058 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 113, 34

Conread position: 871-1086
Cow position: chr20:39517974-39518184 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 111, 44

Conread position: 871-1087
Cow position: chr20:29845017-29845231 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 110, 48

Conread position: 872-1037
Cow position: chr20:32084113-32083950 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 872-1061
Cow position: chr20:36207773-36207970 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 874-1075
Cow position: chr20:23286361-23286164 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 171, 42

Conread position: 874-1081
Cow position: chr20:19060869-19060664 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 93, 110

Conread position: 874-1087
Cow position: chr20:21815531-21815742 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 110, 21

Conread position: 874-1096
Cow position: chr20:6248633-6248414 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 107, 157

Conread position: 875-1071
Cow position: chr20:22065040-22065230 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 44, 97

Conread position: 878-1060
Cow position: chr20:33363489-33363672 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 35, 28

Conread position: 881-1061
Cow position: chr20:22978303-22978483 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 126
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 103, 42

Conread position: 881-1074
Cow position: chr20:26723697-26723512 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 100, 38

Conread position: 882-1017
Cow position: chr20:35354845-35354707 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 101, 34

Conread position: 882-1073
Cow position: chr20:7756646-7756456 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 33, 27

Conread position: 885-1081
Cow position: chr20:32847322-32847518 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 12, 43

Conread position: 886-1040
Cow position: chr20:1009723-1009571 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 95, 7

Conread position: 888-1081
Cow position: chr20:28605193-28605382 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 153
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 27, 0

Conread position: 892-1109
Cow position: chr20:11043489-11043273 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 25, 93

Conread position: 894-1082
Cow position: chr20:7362955-7363137 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 904-1074
Cow position: chr20:20158132-20158307 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 13, 125

Conread position: 910-1073
Cow position: chr20:16935305-16935144 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 138, 13

Conread position: 912-1073
Cow position: chr20:25009625-25009462 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 72, 31

Conread position: 914-1085
Cow position: chr20:15529868-15530039 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 7, 83

Conread position: 915-1063
Cow position: chr20:24097009-24097159 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 5, 113

Conread position: 916-1081
Cow position: chr20:3148694-3148859 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 68, 110

Conread position: 922-1076
Cow position: chr20:15766127-15766282 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 56, 10

Show alignments to all cow chromosomes.