Cow genome map

Conread name: Ss1.1-Tra1-TCH01A040044.5

Conread position: 854-1088
Cow position: chr24:41405780-41406009 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 112, 66

Conread position: 856-1083
Cow position: chr24:230161-230393 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 116, 227

Conread position: 858-1063
Cow position: chr24:28319325-28319118 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 865-1058
Cow position: chr24:175602-175409 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 43, 9

Conread position: 865-1088
Cow position: chr24:30308663-30308441 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 56, 161

Conread position: 867-1004
Cow position: chr24:6487813-6487948 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 867-1014
Cow position: chr24:3430629-3430775 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 114, 49

Conread position: 867-1021
Cow position: chr24:211881-212036 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 45

Conread position: 867-1023
Cow position: chr24:36404248-36404092 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 111, 152

Conread position: 867-1046
Cow position: chr24:31324178-31324358 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 40, 158

Conread position: 867-1047
Cow position: chr24:19736439-19736259 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 48, 65

Conread position: 867-1062
Cow position: chr24:37037793-37037992 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 50, 0

Conread position: 867-1063
Cow position: chr24:29063758-29063567 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 189, 42

Conread position: 867-1066
Cow position: chr24:27726119-27725918 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 867-1070
Cow position: chr24:15246748-15246545 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 50, 24

Conread position: 867-1071
Cow position: chr24:35675441-35675635 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 114, 28

Conread position: 867-1072
Cow position: chr24:17860365-17860159 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 58

Conread position: 867-1072
Cow position: chr24:27608205-27608008 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 154
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 56, 141

Conread position: 867-1073
Cow position: chr24:2402472-2402267 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 114, 42

Conread position: 867-1074
Cow position: chr24:15057297-15057496 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 867-1075
Cow position: chr24:39849991-39849786 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 156, 42

Conread position: 867-1076
Cow position: chr24:5754734-5754937 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 159
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 111, 13

Conread position: 867-1076
Cow position: chr24:18357158-18356950 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 51, 22

Conread position: 867-1076
Cow position: chr24:28233945-28234147 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 200, 30

Conread position: 867-1076
Cow position: chr24:29561678-29561471 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 14

Conread position: 867-1081
Cow position: chr24:17104676-17104460 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 62, 56

Conread position: 867-1081
Cow position: chr24:20874576-20874789 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 114, 140

Conread position: 867-1081
Cow position: chr24:30235763-30235981 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 57, 120

Conread position: 867-1081
Cow position: chr24:31359220-31359427 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 111, 47

Conread position: 867-1081
Cow position: chr24:37975085-37974875 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 55, 20

Conread position: 867-1081
Cow position: chr24:39523551-39523341 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 117, 49

Conread position: 867-1084
Cow position: chr24:33153672-33153888 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 117, 56

Conread position: 867-1086
Cow position: chr24:19769384-19769606 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 114, 49

Conread position: 867-1087
Cow position: chr24:28990459-28990671 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 111, 14

Conread position: 867-1096
Cow position: chr24:23187025-23186792 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 114, 0

Conread position: 867-1103
Cow position: chr24:28062848-28063078 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 176
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 107, 28

Conread position: 867-1106
Cow position: chr24:39791435-39791675 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 181
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 114, 161

Conread position: 867-1110
Cow position: chr24:17955545-17955310 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 155, 40

Conread position: 868-1068
Cow position: chr24:6131976-6131775 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 12

Conread position: 869-1096
Cow position: chr24:37650569-37650792 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 153

Conread position: 870-1052
Cow position: chr24:39483376-39483556 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 0

Conread position: 870-1072
Cow position: chr24:25885262-25885061 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 43, 112

Conread position: 870-1074
Cow position: chr24:31812088-31812292 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 111, 11

Conread position: 870-1075
Cow position: chr24:27713508-27713302 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 111, 157

Conread position: 870-1076
Cow position: chr24:28496684-28496479 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 56, 24

Conread position: 870-1076
Cow position: chr24:30314130-30313924 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 42, 29

Conread position: 870-1087
Cow position: chr24:15373306-15373517 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 111, 37

Conread position: 870-1087
Cow position: chr24:29673419-29673636 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 56

Conread position: 870-1090
Cow position: chr24:5141843-5142058 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 164
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 114, 39

Conread position: 870-1095
Cow position: chr24:18741671-18741449 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 159
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 115, 37

Conread position: 870-1097
Cow position: chr24:33222043-33221820 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 111, 156

Conread position: 870-1107
Cow position: chr24:24457346-24457117 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 110, 14

Conread position: 871-1069
Cow position: chr24:24250628-24250819 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 57, 104

Conread position: 871-1075
Cow position: chr24:1269692-1269885 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 38, 0

Conread position: 871-1080
Cow position: chr24:10499112-10499326 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 93, 126

Conread position: 871-1081
Cow position: chr24:17311317-17311115 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 206, 15

Conread position: 871-1088
Cow position: chr24:24662230-24662014 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 113, 36

Conread position: 872-1076
Cow position: chr24:28042873-28043079 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 200

Conread position: 872-1085
Cow position: chr24:35150423-35150633 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 191, 47

Conread position: 873-1046
Cow position: chr24:30897636-30897464 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 108, 161

Conread position: 873-1075
Cow position: chr24:3165718-3165922 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 139
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 54, 36

Conread position: 873-1076
Cow position: chr24:31816478-31816682 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 108, 0

Conread position: 874-1049
Cow position: chr24:24755346-24755524 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 40, 55

Conread position: 874-1074
Cow position: chr24:24491115-24490916 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 44, 52

Conread position: 874-1087
Cow position: chr24:28303464-28303253 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 107, 135

Conread position: 874-1088
Cow position: chr24:6912463-6912251 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 42, 12

Conread position: 874-1088
Cow position: chr24:34008673-34008460 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 34

Conread position: 875-1071
Cow position: chr24:37823432-37823626 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 106, 34

Conread position: 876-1069
Cow position: chr24:4710341-4710152 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 36

Conread position: 876-1076
Cow position: chr24:14457818-14457622 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 68, 0

Conread position: 877-1087
Cow position: chr24:13948027-13948233 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 104, 120

Conread position: 878-1073
Cow position: chr24:20364503-20364311 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 44, 20

Conread position: 881-1047
Cow position: chr24:201730-201562 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 39, 94

Conread position: 881-1087
Cow position: chr24:27349270-27349063 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 28, 106

Conread position: 882-1074
Cow position: chr24:43028419-43028227 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 99, 85

Conread position: 882-1075
Cow position: chr24:15288731-15288931 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 26, 155

Conread position: 882-1084
Cow position: chr24:11887069-11887268 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 30, 42

Conread position: 887-1087
Cow position: chr24:27284736-27284933 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 131, 28

Conread position: 888-1075
Cow position: chr24:27844613-27844425 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 32, 21

Conread position: 892-1095
Cow position: chr24:18474808-18474613 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 86, 17

Conread position: 895-1060
Cow position: chr24:27824382-27824550 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 912-1075
Cow position: chr24:5360659-5360819 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 107, 10

Conread position: 912-1082
Cow position: chr24:42981818-42981650 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 151, 15

Conread position: 920-1073
Cow position: chr24:17375585-17375740 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 920-1081
Cow position: chr24:22133118-22133277 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 63, 139

Conread position: 941-1088
Cow position: chr24:29539961-29539814 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 43, 48

Conread position: 945-1081
Cow position: chr24:3412655-3412790 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 40, 105

Show alignments to all cow chromosomes.