Cow genome map

Conread name: Ss1.1-Tra1-TCH01A040044.5

Conread position: 856-1047
Cow position: chr25:14720650-14720841 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 64

Conread position: 857-1088
Cow position: chr25:40931181-40931408 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 174
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 10, 43

Conread position: 865-1075
Cow position: chr25:36021239-36021448 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 67

Conread position: 867-1001
Cow position: chr25:26642502-26642638 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 111, 0

Conread position: 867-1018
Cow position: chr25:24051881-24052034 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 42, 20

Conread position: 867-1034
Cow position: chr25:14118011-14118175 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 149, 114

Conread position: 867-1047
Cow position: chr25:36036862-36036682 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 114, 20

Conread position: 867-1049
Cow position: chr25:16319221-16319041 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 52, 14

Conread position: 867-1050
Cow position: chr25:4681149-4681326 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 867-1054
Cow position: chr25:11436892-11436703 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 164

Conread position: 867-1059
Cow position: chr25:21191405-21191598 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 114, 0

Conread position: 867-1060
Cow position: chr25:12510093-12509901 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 114, 49

Conread position: 867-1061
Cow position: chr25:20023471-20023275 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 867-1071
Cow position: chr25:4947881-4948081 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 111, 31

Conread position: 867-1071
Cow position: chr25:11051446-11051649 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 52, 113

Conread position: 867-1072
Cow position: chr25:7641536-7641328 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 59

Conread position: 867-1072
Cow position: chr25:11661898-11661696 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 41

Conread position: 867-1074
Cow position: chr25:18721202-18720996 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 70, 14

Conread position: 867-1075
Cow position: chr25:20785667-20785462 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 116, 40

Conread position: 867-1075
Cow position: chr25:21893254-21893464 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 144
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 54, 49

Conread position: 867-1081
Cow position: chr25:4521918-4521710 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 152, 38

Conread position: 867-1081
Cow position: chr25:7750368-7750580 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 114, 192

Conread position: 867-1081
Cow position: chr25:11433035-11432815 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 173
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 23, 189

Conread position: 867-1081
Cow position: chr25:13621441-13621231 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 59, 154

Conread position: 867-1081
Cow position: chr25:19364142-19363929 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 48

Conread position: 867-1081
Cow position: chr25:26679146-26679358 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 111, 52

Conread position: 867-1081
Cow position: chr25:33457648-33457860 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 114, 192

Conread position: 867-1081
Cow position: chr25:36746530-36746317 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 116, 49

Conread position: 867-1086
Cow position: chr25:13566880-13567106 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 167

Conread position: 867-1086
Cow position: chr25:15714791-15715010 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 41, 28

Conread position: 867-1087
Cow position: chr25:7007827-7008046 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 61

Conread position: 867-1087
Cow position: chr25:7673208-7673437 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 34, 60

Conread position: 867-1087
Cow position: chr25:7799471-7799685 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 42

Conread position: 867-1087
Cow position: chr25:13443495-13443276 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 77

Conread position: 867-1087
Cow position: chr25:23745175-23745397 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 111, 0

Conread position: 867-1088
Cow position: chr25:9843094-9843311 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 114, 19

Conread position: 867-1088
Cow position: chr25:26051819-26052044 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 56

Conread position: 867-1088
Cow position: chr25:30279292-30279070 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 114, 160

Conread position: 867-1088
Cow position: chr25:36872280-36872495 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 114, 39

Conread position: 867-1112
Cow position: chr25:17144342-17144595 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 40, 132

Conread position: 868-980
Cow position: chr25:7440945-7441058 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 868-1087
Cow position: chr25:12609260-12609479 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 151, 115

Conread position: 870-1063
Cow position: chr25:6961233-6961040 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 111, 34

Conread position: 870-1071
Cow position: chr25:22178842-22179035 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 111, 20

Conread position: 870-1075
Cow position: chr25:6683143-6682938 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 111, 186

Conread position: 870-1075
Cow position: chr25:7216751-7216947 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 153, 79

Conread position: 870-1075
Cow position: chr25:23829209-23829004 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 113, 74

Conread position: 870-1076
Cow position: chr25:24572990-24573191 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 870-1081
Cow position: chr25:3992704-3992911 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 88, 106

Conread position: 870-1081
Cow position: chr25:22315120-22315335 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 40, 161

Conread position: 870-1082
Cow position: chr25:13272488-13272699 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 113, 186

Conread position: 870-1086
Cow position: chr25:22751088-22750871 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 40

Conread position: 870-1087
Cow position: chr25:12806965-12807174 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 207, 43

Conread position: 870-1088
Cow position: chr25:21245682-21245469 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 114, 45

Conread position: 870-1094
Cow position: chr25:30618985-30619206 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 117, 44

Conread position: 871-972
Cow position: chr25:35902435-35902536 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 871-1076
Cow position: chr25:21668168-21668373 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 56, 158

Conread position: 871-1088
Cow position: chr25:11585439-11585653 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 43, 55

Conread position: 871-1092
Cow position: chr25:14157543-14157767 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 66

Conread position: 872-1047
Cow position: chr25:14809203-14809370 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 109, 45

Conread position: 872-1072
Cow position: chr25:4547793-4547596 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 13

Conread position: 872-1087
Cow position: chr25:23504970-23505188 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 166
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 35, 158

Conread position: 873-994
Cow position: chr25:14266596-14266477 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 55, 61

Conread position: 873-1072
Cow position: chr25:19679268-19679475 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 166

Conread position: 874-1072
Cow position: chr25:12117077-12116877 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 38, 155

Conread position: 874-1087
Cow position: chr25:35826363-35826145 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 41, 161

Conread position: 874-1107
Cow position: chr25:19478597-19478834 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 209

Conread position: 875-1061
Cow position: chr25:7379224-7379036 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 20

Conread position: 876-1047
Cow position: chr25:10156501-10156666 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 105, 32

Conread position: 877-1081
Cow position: chr25:33550436-33550642 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 104, 39

Conread position: 877-1085
Cow position: chr25:22341454-22341661 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 142
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 104, 32

Conread position: 878-1070
Cow position: chr25:13767898-13768088 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 103, 130

Conread position: 881-1058
Cow position: chr25:7012360-7012535 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 100, 28

Conread position: 881-1081
Cow position: chr25:23245070-23244873 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 100, 36

Conread position: 882-1074
Cow position: chr25:15273606-15273797 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 99, 39

Conread position: 882-1081
Cow position: chr25:26306273-26306072 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 96, 148

Conread position: 883-1081
Cow position: chr25:1840255-1840452 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 43, 177

Conread position: 883-1088
Cow position: chr25:22531215-22531418 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 100, 84

Conread position: 884-1069
Cow position: chr25:6134157-6133974 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 100, 113

Conread position: 884-1087
Cow position: chr25:36019733-36019532 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 171, 110

Conread position: 900-1081
Cow position: chr25:22298585-22298763 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 124

Conread position: 907-1072
Cow position: chr25:18810298-18810467 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 910-1087
Cow position: chr25:22348503-22348327 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 73, 13

Conread position: 911-1081
Cow position: chr25:18288806-18288639 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 73, 14

Conread position: 912-1133
Cow position: chr25:15463548-15463782 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 913-1087
Cow position: chr25:28597650-28597472 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 913-1110
Cow position: chr25:18929230-18929029 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 117

Conread position: 914-1073
Cow position: chr25:13222863-13223024 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 70, 0

Conread position: 918-1075
Cow position: chr25:35109302-35109146 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 67, 139

Conread position: 919-1099
Cow position: chr25:15254381-15254198 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 109

Conread position: 920-1074
Cow position: chr25:9107555-9107399 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 920-1088
Cow position: chr25:9990141-9989974 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 136

Conread position: 934-1088
Cow position: chr25:30625100-30624946 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 93

Show alignments to all cow chromosomes.