Cow genome map

Conread name: Ss1.1-Tra1-TCH01A040044.5

Conread position: 849-1077
Cow position: chr27:22418712-22418938 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 115

Conread position: 855-1021
Cow position: chr27:21130356-21130189 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 9

Conread position: 855-1114
Cow position: chr27:22421802-22422062 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 17

Conread position: 857-1081
Cow position: chr27:15668725-15668951 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 11

Conread position: 857-1081
Cow position: chr27:22171345-22171124 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 52, 11

Conread position: 859-1074
Cow position: chr27:20641285-20641504 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 71

Conread position: 865-1061
Cow position: chr27:26853319-26853514 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 60, 119

Conread position: 867-1004
Cow position: chr27:24306864-24306729 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 42

Conread position: 867-1014
Cow position: chr27:30890323-30890181 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 117, 45

Conread position: 867-1034
Cow position: chr27:16625934-16625770 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 137
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 52, 0

Conread position: 867-1034
Cow position: chr27:22225559-22225722 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 70, 42

Conread position: 867-1047
Cow position: chr27:20629098-20628926 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 46

Conread position: 867-1054
Cow position: chr27:8353510-8353329 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 867-1058
Cow position: chr27:26407129-26407313 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 867-1062
Cow position: chr27:1498353-1498160 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 62

Conread position: 867-1062
Cow position: chr27:8405789-8405978 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 114, 51

Conread position: 867-1062
Cow position: chr27:29504610-29504808 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 867-1072
Cow position: chr27:15408998-15409202 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 115, 190

Conread position: 867-1072
Cow position: chr27:16478303-16478504 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 60

Conread position: 867-1072
Cow position: chr27:17331535-17331337 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 115

Conread position: 867-1075
Cow position: chr27:22220592-22220382 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 114, 0

Conread position: 867-1075
Cow position: chr27:28206836-28206632 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 107, 28

Conread position: 867-1076
Cow position: chr27:19388050-19387846 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 200, 32

Conread position: 867-1076
Cow position: chr27:23107865-23108073 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 54, 121

Conread position: 867-1076
Cow position: chr27:23452495-23452292 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 0

Conread position: 867-1076
Cow position: chr27:30407001-30407210 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 36

Conread position: 867-1077
Cow position: chr27:4673055-4672841 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 48, 195

Conread position: 867-1081
Cow position: chr27:16103844-16103634 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 196, 48

Conread position: 867-1082
Cow position: chr27:23890975-23890757 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 59

Conread position: 867-1086
Cow position: chr27:23483263-23483047 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 121

Conread position: 867-1087
Cow position: chr27:27388982-27389204 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 64

Conread position: 867-1087
Cow position: chr27:29593592-29593808 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 867-1088
Cow position: chr27:4720076-4720297 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 48, 117

Conread position: 867-1088
Cow position: chr27:6550493-6550281 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 152, 47

Conread position: 867-1088
Cow position: chr27:7212675-7212894 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 114, 182

Conread position: 867-1088
Cow position: chr27:16780904-16780689 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 147, 0

Conread position: 867-1088
Cow position: chr27:20517695-20517479 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 29

Conread position: 867-1088
Cow position: chr27:23511026-23510801 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 135

Conread position: 867-1100
Cow position: chr27:19717958-19717720 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 12

Conread position: 867-1142
Cow position: chr27:20812947-20812668 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 54

Conread position: 868-1040
Cow position: chr27:4812845-4813019 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 50, 160

Conread position: 868-1072
Cow position: chr27:23472291-23472094 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 151, 41

Conread position: 868-1081
Cow position: chr27:299344-299553 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 42

Conread position: 869-1054
Cow position: chr27:1123065-1122882 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 869-1084
Cow position: chr27:19685677-19685892 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 110, 187

Conread position: 870-1004
Cow position: chr27:20789344-20789479 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 8

Conread position: 870-1021
Cow position: chr27:815399-815245 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 65

Conread position: 870-1071
Cow position: chr27:27632573-27632765 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 111, 35

Conread position: 870-1078
Cow position: chr27:24321219-24321014 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 168, 46

Conread position: 870-1087
Cow position: chr27:6925122-6924905 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 162

Conread position: 870-1088
Cow position: chr27:30359438-30359220 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 153
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 16

Conread position: 870-1099
Cow position: chr27:23559997-23560225 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 172
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 49, 38

Conread position: 871-1069
Cow position: chr27:25720908-25721113 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 135

Conread position: 871-1073
Cow position: chr27:20067944-20068142 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 871-1081
Cow position: chr27:427000-426793 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 193, 23

Conread position: 871-1081
Cow position: chr27:23485245-23485037 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 40, 112

Conread position: 871-1088
Cow position: chr27:20795825-20795610 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 48, 111

Conread position: 872-1076
Cow position: chr27:26984380-26984177 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 112, 156

Conread position: 872-1088
Cow position: chr27:15378447-15378656 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 37, 9

Conread position: 872-1090
Cow position: chr27:20828677-20828893 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 147
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 109, 171

Conread position: 874-1054
Cow position: chr27:20092800-20092984 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 35

Conread position: 874-1073
Cow position: chr27:7412414-7412226 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 109, 32

Conread position: 875-1047
Cow position: chr27:16284505-16284333 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 51

Conread position: 875-1074
Cow position: chr27:22035347-22035548 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 55

Conread position: 875-1082
Cow position: chr27:23594350-23594143 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 107, 48

Conread position: 877-1069
Cow position: chr27:20549681-20549875 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 35, 49

Conread position: 880-1067
Cow position: chr27:237294-237108 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 44

Conread position: 880-1073
Cow position: chr27:20897000-20897188 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 142, 104

Conread position: 880-1081
Cow position: chr27:29597726-29597924 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 192, 72

Conread position: 882-1074
Cow position: chr27:15454236-15454043 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 33, 107

Conread position: 882-1076
Cow position: chr27:17397430-17397624 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 40, 147

Conread position: 882-1082
Cow position: chr27:26643707-26643515 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 62, 0

Conread position: 882-1087
Cow position: chr27:590739-590946 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 27, 49

Conread position: 882-1092
Cow position: chr27:14670367-14670567 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 99, 27

Conread position: 884-1047
Cow position: chr27:26151042-26150875 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 29, 147

Conread position: 888-1076
Cow position: chr27:21669104-21669286 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 93, 21

Conread position: 888-1087
Cow position: chr27:19509030-19508831 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 32, 24

Conread position: 889-1073
Cow position: chr27:4944499-4944680 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 92, 20

Conread position: 890-1088
Cow position: chr27:22348500-22348307 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 20

Conread position: 891-1070
Cow position: chr27:28478594-28478414 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 90, 136

Conread position: 892-1076
Cow position: chr27:31210559-31210377 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 916-1076
Cow position: chr27:26239014-26238853 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 65, 121

Conread position: 919-1082
Cow position: chr27:6106684-6106528 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 9

Conread position: 919-1088
Cow position: chr27:16589716-16589885 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 159

Conread position: 919-1088
Cow position: chr27:30489424-30489593 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 65, 159

Conread position: 919-1107
Cow position: chr27:6674264-6674078 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 5

Conread position: 921-1074
Cow position: chr27:7343444-7343598 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 123

Conread position: 921-1081
Cow position: chr27:15002994-15003156 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 60, 0

Conread position: 928-1075
Cow position: chr27:788820-788965 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 60, 122

Conread position: 954-1081
Cow position: chr27:26504253-26504127 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 124, 33

Show alignments to all cow chromosomes.