Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01A040044.5 |
| Conread position: | 843-1082 |
| Cow position: | chr29:21665983-21666217 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 134, 25 |
| Conread position: | 855-1088 |
| Cow position: | chr29:23220596-23220365 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 19, 165 |
| Conread position: | 864-965 |
| Cow position: | chr29:32215399-32215501 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 867-1047 |
| Cow position: | chr29:22162334-22162152 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 867-1047 |
| Cow position: | chr29:24578777-24578960 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 24, 165 |
| Conread position: | 867-1048 |
| Cow position: | chr29:23984039-23983857 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 62, 49 |
| Conread position: | 867-1049 |
| Cow position: | chr29:4520254-4520435 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 122 |
| Conread position: | 867-1054 |
| Cow position: | chr29:26615803-26615613 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 114, 49 |
| Conread position: | 867-1058 |
| Cow position: | chr29:27329811-27330000 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 114, 58 |
| Conread position: | 867-1061 |
| Cow position: | chr29:9709614-9709806 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 867-1061 |
| Cow position: | chr29:17607334-17607527 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 116, 164 |
| Conread position: | 867-1061 |
| Cow position: | chr29:20903366-20903179 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 117, 14 |
| Conread position: | 867-1065 |
| Cow position: | chr29:41811669-41811475 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 867-1067 |
| Cow position: | chr29:5186577-5186376 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 867-1071 |
| Cow position: | chr29:5063066-5063268 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 114, 49 |
| Conread position: | 867-1071 |
| Cow position: | chr29:36217036-36217233 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 867-1074 |
| Cow position: | chr29:39111396-39111192 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 867-1075 |
| Cow position: | chr29:4874969-4874755 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 55, 165 |
| Conread position: | 867-1076 |
| Cow position: | chr29:1007735-1007946 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 867-1076 |
| Cow position: | chr29:11647008-11647220 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 90 |
| Conread position: | 867-1081 |
| Cow position: | chr29:1556850-1557061 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 58 |
| Conread position: | 867-1081 |
| Cow position: | chr29:19949220-19949437 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 32, 122 |
| Conread position: | 867-1081 |
| Cow position: | chr29:20770262-20770472 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 117 |
| Conread position: | 867-1081 |
| Cow position: | chr29:29769432-29769222 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 135, 58 |
| Conread position: | 867-1082 |
| Cow position: | chr29:34359061-34358844 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 867-1082 |
| Cow position: | chr29:36530786-36530999 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 114, 19 |
| Conread position: | 867-1083 |
| Cow position: | chr29:34773815-34773604 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 111, 41 |
| Conread position: | 867-1084 |
| Cow position: | chr29:4480253-4480040 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 111, 56 |
| Conread position: | 867-1085 |
| Cow position: | chr29:12680077-12680290 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 114, 41 |
| Conread position: | 867-1086 |
| Cow position: | chr29:10058621-10058401 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 171 |
| Conread position: | 867-1087 |
| Cow position: | chr29:31928900-31929119 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 867-1088 |
| Cow position: | chr29:10156386-10156169 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 867-1088 |
| Cow position: | chr29:23243961-23243741 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 867-1088 |
| Cow position: | chr29:29314736-29314523 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 122, 114 |
| Conread position: | 867-1100 |
| Cow position: | chr29:26559322-26559100 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 152, 9 |
| Conread position: | 868-1072 |
| Cow position: | chr29:35501731-35501531 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 113, 14 |
| Conread position: | 870-1047 |
| Cow position: | chr29:18012476-18012655 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 161 |
| Conread position: | 870-1066 |
| Cow position: | chr29:463736-463536 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 171 |
| Conread position: | 870-1070 |
| Cow position: | chr29:28197083-28196889 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 870-1070 |
| Cow position: | chr29:29176693-29176499 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 870-1072 |
| Cow position: | chr29:22613348-22613549 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 870-1076 |
| Cow position: | chr29:7624096-7624302 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 870-1085 |
| Cow position: | chr29:41530769-41530983 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 870-1087 |
| Cow position: | chr29:22519208-22518991 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 112, 147 |
| Conread position: | 870-1088 |
| Cow position: | chr29:22714802-22714585 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 118, 46 |
| Conread position: | 870-1120 |
| Cow position: | chr29:13028359-13028611 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 116 |
| Conread position: | 871-1072 |
| Cow position: | chr29:40117491-40117691 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 871-1087 |
| Cow position: | chr29:87093-86872 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 41, 87 |
| Conread position: | 872-1072 |
| Cow position: | chr29:30548697-30548898 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 872-1075 |
| Cow position: | chr29:1325364-1325563 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 872-1075 |
| Cow position: | chr29:25737494-25737290 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 195 |
| Conread position: | 872-1086 |
| Cow position: | chr29:28840077-28840295 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 111, 155 |
| Conread position: | 872-1088 |
| Cow position: | chr29:18085493-18085709 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 109, 206 |
| Conread position: | 874-1047 |
| Cow position: | chr29:27826448-27826617 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 874-1071 |
| Cow position: | chr29:22029032-22028834 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 112 |
| Conread position: | 874-1074 |
| Cow position: | chr29:41112949-41112757 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 875-1047 |
| Cow position: | chr29:26778805-26778979 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 875-1088 |
| Cow position: | chr29:29324487-29324289 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 875-1107 |
| Cow position: | chr29:8926538-8926302 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 39, 204 |
| Conread position: | 879-1075 |
| Cow position: | chr29:40873939-40874137 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 102, 149 |
| Conread position: | 880-1017 |
| Cow position: | chr29:31477185-31477046 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 881-1076 |
| Cow position: | chr29:38978462-38978657 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 882-1081 |
| Cow position: | chr29:23825287-23825080 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 156 |
| Conread position: | 882-1081 |
| Cow position: | chr29:44139312-44139113 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 99, 131 |
| Conread position: | 882-1087 |
| Cow position: | chr29:45005697-45005493 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 884-1018 |
| Cow position: | chr29:31943800-31943934 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 888-1081 |
| Cow position: | chr29:29923636-29923442 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 889-1075 |
| Cow position: | chr29:21285300-21285484 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 18 |
| Conread position: | 889-1077 |
| Cow position: | chr29:4002829-4003017 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 89, 169 |
| Conread position: | 891-1088 |
| Cow position: | chr29:30681769-30681574 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 892-1074 |
| Cow position: | chr29:22167138-22166957 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 157 |
| Conread position: | 895-1054 |
| Cow position: | chr29:23155174-23155330 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 86, 16 |
| Conread position: | 912-1075 |
| Cow position: | chr29:683530-683367 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 123 |
| Conread position: | 918-1063 |
| Cow position: | chr29:32197664-32197810 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 919-1076 |
| Cow position: | chr29:39038301-39038143 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 62, 109 |
| Conread position: | 919-1081 |
| Cow position: | chr29:17804502-17804662 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 7, 89 |
| Conread position: | 920-1081 |
| Cow position: | chr29:17109929-17110087 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 925-1075 |
| Cow position: | chr29:22735131-22734984 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 926-1076 |
| Cow position: | chr29:22723576-22723727 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 927-1081 |
| Cow position: | chr29:742673-742519 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 51, 129 |
| Conread position: | 940-1081 |
| Cow position: | chr29:19363700-19363840 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 48 |
Show alignments to all cow chromosomes.