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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01A040047.5
        

               
Conread position:
               
1-304
               

               
Cow position:
               
chr1:55146907-55146598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr1:8287519-8287817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
4-288
               

               
Cow position:
               
chr1:80311548-80311281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
200, 35
               

               
Conread position:
               
4-301
               

               
Cow position:
               
chr1:61391686-61391992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
124, 13
               

               
Conread position:
               
4-303
               

               
Cow position:
               
chr1:3138018-3137730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
128, 35
               

               
Conread position:
               
4-303
               

               
Cow position:
               
chr1:34686283-34685992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
119, 7
               

               
Conread position:
               
5-172
               

               
Cow position:
               
chr1:86912543-86912373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
5-189
               

               
Cow position:
               
chr1:42541701-42541514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
138, 34
               

               
Conread position:
               
5-201
               

               
Cow position:
               
chr1:82513250-82513450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
123, 37
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr1:39426902-39427185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
6-189
               

               
Cow position:
               
chr1:50992035-50991852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr1:67688481-67688669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
134, 33
               

               
Conread position:
               
6-234
               

               
Cow position:
               
chr1:78838897-78838665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
125, 35
               

               
Conread position:
               
6-279
               

               
Cow position:
               
chr1:57297592-57297300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
6-286
               

               
Cow position:
               
chr1:84910547-84910816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
180, 27
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr1:16855597-16855894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr1:19885483-19885181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr1:26702105-26702411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
65, 33
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr1:69264910-69264618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr1:71253454-71253758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
122, 33
               

               
Conread position:
               
6-305
               

               
Cow position:
               
chr1:52995128-52994819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
6-305
               

               
Cow position:
               
chr1:88652738-88652426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
7-122
               

               
Cow position:
               
chr1:68688684-68688573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-127
               

               
Cow position:
               
chr1:45315535-45315651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-139
               

               
Cow position:
               
chr1:41027175-41027046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-142
               

               
Cow position:
               
chr1:83618503-83618637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
31, 46
               

               
Conread position:
               
7-161
               

               
Cow position:
               
chr1:81481281-81481439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
7-172
               

               
Cow position:
               
chr1:54267838-54267999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-172
               

               
Cow position:
               
chr1:95072433-95072264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-173
               

               
Cow position:
               
chr1:31855146-31855302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-174
               

               
Cow position:
               
chr1:46143361-46143530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
7-175
               

               
Cow position:
               
chr1:89158024-89158198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
119, 24
               

               
Conread position:
               
7-180
               

               
Cow position:
               
chr1:3965934-3965766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
117, 32
               

               
Conread position:
               
7-185
               

               
Cow position:
               
chr1:52467404-52467223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
123, 39
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr1:53452636-53452462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-193
               

               
Cow position:
               
chr1:759317-759499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-198
               

               
Cow position:
               
chr1:4581229-4581418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
7-199
               

               
Cow position:
               
chr1:7023222-7023028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
122, 26
               

               
Conread position:
               
7-199
               

               
Cow position:
               
chr1:80841747-80841560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr1:19226956-19227149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
125, 26
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr1:56618554-56618745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr1:68845068-68845251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
169, 32
               

               
Conread position:
               
7-204
               

               
Cow position:
               
chr1:65028635-65028432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-220
               

               
Cow position:
               
chr1:261371-261598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
19, 71
               

               
Conread position:
               
7-220
               

               
Cow position:
               
chr1:17196526-17196742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 27
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr1:20104367-20104148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 14
               

               
Conread position:
               
7-239
               

               
Cow position:
               
chr1:85549977-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
7-239
               

               
Cow position:
               
chr1:89449001-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-240
               

               
Cow position:
               
chr1:89230130-89230367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr1:97090427-97090187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-254
               

               
Cow position:
               
chr1:38401900-38401641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
50, 24
               

               
Conread position:
               
7-258
               

               
Cow position:
               
chr1:64572616-64572356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
7-260
               

               
Cow position:
               
chr1:24581677-24581424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
7-260
               

               
Cow position:
               
chr1:78097028-78096777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
7-260
               

               
Cow position:
               
chr1:85647681-85647941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
7-260
               

               
Cow position:
               
chr1:88913420-88913158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr1:31272341-31272602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr1:12978783-12978512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
120, 32
               

               
Conread position:
               
7-271
               

               
Cow position:
               
chr1:59519016-59518750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-275
               

               
Cow position:
               
chr1:90621404-90621689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
7-275
               

               
Cow position:
               
chr1:91874816-91875085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
7-278
               

               
Cow position:
               
chr1:20667641-20667919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
130, 29
               

               
Conread position:
               
7-281
               

               
Cow position:
               
chr1:86110643-86110913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-281
               

               
Cow position:
               
chr1:89388445-89388151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
85, 32
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr1:39509957-39510240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 31
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr1:51394519-51394232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr1:83072542-83072251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-295
               

               
Cow position:
               
chr1:96276950-96277249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
7-300
               

               
Cow position:
               
chr1:74822552-74822252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 181
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr1:22827259-22826969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr1:84255868-84255554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr1:91066051-91066349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr1:25383769-25383461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr1:42887176-42887464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 35
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr1:66430392-66430095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr1:70380042-70380347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 15
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr1:79844566-79844267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:3962586-3962886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
82, 31
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:4291265-4290956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
80, 24
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:4414108-4414410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:43388951-43389250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:43505630-43505321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:50930878-50931171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:51445987-51445677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:55357194-55357488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:56225570-56225273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
129, 24
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:57575663-57575970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:61741867-61742169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:68817698-68818001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:75744963-75744658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:82880745-82880462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:97954367-97954651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
121, 24
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr1:100706227-100705930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:196904-197211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:3720343-3720630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
184, 11
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:3789968-3790259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:3923699-3923997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:5135609-5135895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:8349224-8349514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:19481980-19482276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:20384522-20384824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:25281556-25281879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:29935286-29935585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
89, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:31499726-31499424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
58, 25
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:34159937-34159628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:37321901-37322208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:37706876-37707172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
129, 31
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:37886711-37886990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:39068855-39069154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:41056779-41056481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:44125537-44125843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
120, 35
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:47233377-47233678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:52039737-52039433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:53458796-53458503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:53521016-53520703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:53671649-53671953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
81, 31
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:62036903-62036597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 24
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:62291600-62291889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
139, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:62964367-62964076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:64678796-64678494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:68253696-68253388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:68855266-68854971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
82, 35
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:71078859-71079160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:73960801-73960498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:74955920-74956227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:81355602-81355907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
74, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:81568927-81569238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:81613490-81613182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:81868628-81868929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:82936496-82936785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
196, 35
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:84811838-84812140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:85162446-85162751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
116, 27
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:89350066-89349774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:94226454-94226751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
122, 36
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:95499395-95499699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:98461387-98461087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:100393062-100393368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr1:100450075-100450388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 31
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr1:35162511-35162199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr1:69694892-69695213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr1:70538712-70538399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr1:85029055-85028755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 32
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr1:89509820-89510137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr1:93044118-93043821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
7-315
               

               
Cow position:
               
chr1:24542469-24542795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
8-290
               

               
Cow position:
               
chr1:49317396-49317683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
117, 31
               

               
Conread position:
               
9-260
               

               
Cow position:
               
chr1:45553144-45553390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
129, 33
               

               
Conread position:
               
10-130
               

               
Cow position:
               
chr1:80442841-80442725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
10-133
               

               
Cow position:
               
chr1:40935669-40935788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
10-165
               

               
Cow position:
               
chr1:80584528-80584372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
10-168
               

               
Cow position:
               
chr1:52662075-52662236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
10-169
               

               
Cow position:
               
chr1:3942117-3942273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
10-171
               

               
Cow position:
               
chr1:30136256-30136419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
121, 29
               

               
Conread position:
               
10-202
               

               
Cow position:
               
chr1:102306048-102306239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
10-248
               

               
Cow position:
               
chr1:91023369-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
118, 29
               

               
Conread position:
               
10-260
               

               
Cow position:
               
chr1:77683450-77683198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
190, 29
               

               
Conread position:
               
10-289
               

               
Cow position:
               
chr1:43703507-43703226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
10-295
               

               
Cow position:
               
chr1:7350646-7350344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
10-298
               

               
Cow position:
               
chr1:90975990-90976280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
10-299
               

               
Cow position:
               
chr1:87212031-87211747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
193, 29
               

               
Conread position:
               
10-300
               

               
Cow position:
               
chr1:34771405-34771703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
126, 29
               

               
Conread position:
               
10-302
               

               
Cow position:
               
chr1:36998283-36997991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
173, 29
               

               
Conread position:
               
10-302
               

               
Cow position:
               
chr1:45555464-45555162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
10-303
               

               
Cow position:
               
chr1:78857231-78857525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:7142754-7143052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
101, 7
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:7971510-7971227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
85, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:10778661-10778370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:12464566-12464867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:20205125-20204823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:24132965-24133259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:48105338-48105637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
119, 21
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:49796090-49795801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:53398073-53397784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:54206718-54207022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:55705145-55705457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:61005465-61005769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
131, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:72011715-72012007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
121, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:83582835-83583141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
113, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:83748040-83747736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:89341882-89342196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:91800500-91800809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
148, 31
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:98551818-98551510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:100800451-100800152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 24
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr1:101634810-101634498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr1:5597113-5597454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
11-208
               

               
Cow position:
               
chr1:77232481-77232674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
11-245
               

               
Cow position:
               
chr1:8128871-8129111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
11-250
               

               
Cow position:
               
chr1:100762174-100761930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
11-254
               

               
Cow position:
               
chr1:87197917-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
11-264
               

               
Cow position:
               
chr1:70435095-70434840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
141, 28
               

               
Conread position:
               
11-287
               

               
Cow position:
               
chr1:61012410-61012123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
11-292
               

               
Cow position:
               
chr1:33330997-33331280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
110, 28
               

               
Conread position:
               
11-300
               

               
Cow position:
               
chr1:81290603-81290319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
121, 26
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr1:1956238-1956531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 18
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr1:61885010-61884712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr1:81563842-81563530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr1:93499718-93499419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 28
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr1:101714214-101713914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
121, 18
               

               
Conread position:
               
12-303
               

               
Cow position:
               
chr1:10633142-10632851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
120, 29
               

               
Conread position:
               
12-303
               

               
Cow position:
               
chr1:78811134-78810833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
113, 30
               

               
Conread position:
               
12-304
               

               
Cow position:
               
chr1:3166980-3167276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
117, 27
               

               
Conread position:
               
12-304
               

               
Cow position:
               
chr1:41697151-41696851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 27
               

               
Conread position:
               
13-189
               

               
Cow position:
               
chr1:48769897-48769721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 29
               

               
Conread position:
               
13-200
               

               
Cow position:
               
chr1:90904661-90904847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
118, 25
               

               
Conread position:
               
13-265
               

               
Cow position:
               
chr1:27380551-27380310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
13-301
               

               
Cow position:
               
chr1:94261631-94261347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
120, 29
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr1:22729151-22728844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr1:98031018-98030711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
13-305
               

               
Cow position:
               
chr1:89381370-89381074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
14-204
               

               
Cow position:
               
chr1:79640194-79640388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
14-265
               

               
Cow position:
               
chr1:42175821-42175560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
14-285
               

               
Cow position:
               
chr1:68763594-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
14-304
               

               
Cow position:
               
chr1:21836025-21835745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
14-304
               

               
Cow position:
               
chr1:42873856-42874150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
81, 25
               

               
Conread position:
               
14-304
               

               
Cow position:
               
chr1:85774551-85774256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
14-304
               

               
Cow position:
               
chr1:95177032-95176732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
118, 25
               

               
Conread position:
               
14-305
               

               
Cow position:
               
chr1:44507067-44506763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
111, 25
               

               
Conread position:
               
15-258
               

               
Cow position:
               
chr1:93554929-93554686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
15-278
               

               
Cow position:
               
chr1:96947628-96947882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
15-289
               

               
Cow position:
               
chr1:33206787-33207063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
15-295
               

               
Cow position:
               
chr1:58825634-58825354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
15-295
               

               
Cow position:
               
chr1:82337687-82337979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
15-300
               

               
Cow position:
               
chr1:75933359-75933073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
15-303
               

               
Cow position:
               
chr1:11729268-11728975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
186, 24
               

               
Conread position:
               
15-303
               

               
Cow position:
               
chr1:19466146-19465860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
114, 24
               

               
Conread position:
               
15-303
               

               
Cow position:
               
chr1:37309426-37309713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
110, 24
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr1:49433171-49433468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr1:49839577-49839304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
173, 24
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr1:72285975-72286253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr1:90868348-90868639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
117, 24
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr1:93528794-93528487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr1:99642276-99642573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
15-305
               

               
Cow position:
               
chr1:69539784-69539494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
185, 23
               

               
Conread position:
               
15-314
               

               
Cow position:
               
chr1:28563476-28563783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
114, 24
               

               
Conread position:
               
16-235
               

               
Cow position:
               
chr1:5023670-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 21
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr1:95215099-95215389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
186, 22
               

               
Conread position:
               
21-304
               

               
Cow position:
               
chr1:85597032-85596741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
23-304
               

               
Cow position:
               
chr1:98311157-98310858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
109, 23
               

               
Conread position:
               
25-304
               

               
Cow position:
               
chr1:6077979-6077691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
26-270
               

               
Cow position:
               
chr1:55428867-55429124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
14, 157
               

               
Conread position:
               
26-284
               

               
Cow position:
               
chr1:43352567-43352840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 56
               

               
Conread position:
               
26-295
               

               
Cow position:
               
chr1:99609457-99609171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
26-303
               

               
Cow position:
               
chr1:54258655-54258365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 149
               

               
Conread position:
               
26-304
               

               
Cow position:
               
chr1:11226159-11226449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
26-304
               

               
Cow position:
               
chr1:80336160-80336450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
27-200
               

               
Cow position:
               
chr1:91369925-91370102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
94, 11
               

               
Conread position:
               
27-304
               

               
Cow position:
               
chr1:82884307-82884593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
31-175
               

               
Cow position:
               
chr1:92032526-92032670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
110, 90
               

               
Conread position:
               
31-256
               

               
Cow position:
               
chr1:60281454-60281215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 136
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr1:79591180-79590897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 96
               

               
Conread position:
               
33-237
               

               
Cow position:
               
chr1:41047223-41047436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
96, 43
               

               
Conread position:
               
33-258
               

               
Cow position:
               
chr1:70026266-70026501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
61, 52
               

               
Conread position:
               
33-261
               

               
Cow position:
               
chr1:101946635-101946867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
99, 206
               

               
Conread position:
               
33-303
               

               
Cow position:
               
chr1:4374258-4374541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
92, 133
               

               
Conread position:
               
33-304
               

               
Cow position:
               
chr1:40600124-40599845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
99, 241
               

               
Conread position:
               
33-304
               

               
Cow position:
               
chr1:72304309-72304574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
144, 93
               

               
Conread position:
               
33-304
               

               
Cow position:
               
chr1:75383056-75382788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
160, 46
               

               
Conread position:
               
34-167
               

               
Cow position:
               
chr1:80904845-80904706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
34-200
               

               
Cow position:
               
chr1:51044226-51044399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
34-287
               

               
Cow position:
               
chr1:42398113-42398383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
34-305
               

               
Cow position:
               
chr1:80900198-80899903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
35-304
               

               
Cow position:
               
chr1:97611583-97611856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
90, 149
               

               
Conread position:
               
35-305
               

               
Cow position:
               
chr1:69678243-69678530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
36-187
               

               
Cow position:
               
chr1:61560647-61560807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
36-201
               

               
Cow position:
               
chr1:98512003-98511834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
36-244
               

               
Cow position:
               
chr1:87440543-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
93, 9
               

               
Conread position:
               
36-250
               

               
Cow position:
               
chr1:24534181-24534402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
88, 36
               

               
Conread position:
               
36-290
               

               
Cow position:
               
chr1:92369814-92369539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
36-291
               

               
Cow position:
               
chr1:91039098-91039367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
36-292
               

               
Cow position:
               
chr1:68618855-68619129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 75
               

               
Conread position:
               
36-295
               

               
Cow position:
               
chr1:6788207-6788484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
36-295
               

               
Cow position:
               
chr1:31934583-31934319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
167, 211
               

               
Conread position:
               
36-295
               

               
Cow position:
               
chr1:89498029-89497771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
96, 21
               

               
Conread position:
               
36-301
               

               
Cow position:
               
chr1:13637587-13637871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
96, 238
               

               
Conread position:
               
36-302
               

               
Cow position:
               
chr1:8691-8421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
89, 153
               

               
Conread position:
               
36-302
               

               
Cow position:
               
chr1:67821147-67821411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
23, 88
               

               
Conread position:
               
36-303
               

               
Cow position:
               
chr1:56477668-56477392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
93, 184
               

               
Conread position:
               
36-303
               

               
Cow position:
               
chr1:79165007-79165293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
36-303
               

               
Cow position:
               
chr1:81913079-81913354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
36-303
               

               
Cow position:
               
chr1:92963471-92963196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:1981037-1981313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
87, 225
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:6304788-6305072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:6941544-6941262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:6958957-6958675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:15547546-15547265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
89, 27
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:21787412-21787123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:22730810-22730558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:31413896-31414162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 144
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:33720177-33719910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
167, 57
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:36932230-36931956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 59
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:46218649-46218380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
56, 77
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:53623032-53622760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
89, 43
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:55135912-55135630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
51, 103
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:64250976-64251255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 149
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:97761676-97761423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
141, 92
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr1:102785030-102784757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
36-305
               

               
Cow position:
               
chr1:68951701-68951427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
85, 21
               

               
Conread position:
               
36-334
               

               
Cow position:
               
chr1:46030285-46030586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
167, 224
               

               
Conread position:
               
37-254
               

               
Cow position:
               
chr1:86682485-86682716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
37-274
               

               
Cow position:
               
chr1:73196154-73196405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
37-294
               

               
Cow position:
               
chr1:58754722-58754978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
86, 34
               

               
Conread position:
               
37-295
               

               
Cow position:
               
chr1:12222532-12222799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
37-302
               

               
Cow position:
               
chr1:55230051-55229783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
116, 92
               

               
Conread position:
               
37-303
               

               
Cow position:
               
chr1:16961935-16962216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr1:23633855-23634104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
134, 55
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr1:41181920-41181641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
92, 243
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr1:48581204-48580928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
95, 215
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr1:54478404-54478121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr1:56635173-56634895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 180
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr1:64804027-64804311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 129
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr1:72034849-72035132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr1:78809951-78809680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
97, 211
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr1:102647198-102647472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 227
               

               
Conread position:
               
37-305
               

               
Cow position:
               
chr1:18936762-18937038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
37-305
               

               
Cow position:
               
chr1:34300476-34300752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 204
               

               
Conread position:
               
37-305
               

               
Cow position:
               
chr1:47658420-47658149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
103, 125
               

               
Conread position:
               
37-305
               

               
Cow position:
               
chr1:63434731-63435014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
97, 193
               

               
Conread position:
               
38-295
               

               
Cow position:
               
chr1:51654498-51654216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
38-296
               

               
Cow position:
               
chr1:79278373-79278641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
87, 31
               

               
Conread position:
               
38-300
               

               
Cow position:
               
chr1:84905989-84906267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
38-304
               

               
Cow position:
               
chr1:77720174-77720435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
165, 44
               

               
Conread position:
               
38-304
               

               
Cow position:
               
chr1:87072770-87072501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
31, 22
               

               
Conread position:
               
40-304
               

               
Cow position:
               
chr1:11913806-11914081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 48
               

               
Conread position:
               
40-304
               

               
Cow position:
               
chr1:51981294-51981024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 107
               

               
Conread position:
               
41-274
               

               
Cow position:
               
chr1:95765021-95765258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
41-303
               

               
Cow position:
               
chr1:56229309-56229052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
98, 82
               

               
Conread position:
               
41-304
               

               
Cow position:
               
chr1:25793368-25793642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
41-304
               

               
Cow position:
               
chr1:71136224-71135949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
73, 106
               

               
Conread position:
               
41-305
               

               
Cow position:
               
chr1:15691406-15691133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
41-305
               

               
Cow position:
               
chr1:101822442-101822702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
88, 31
               

               
Conread position:
               
41-313
               

               
Cow position:
               
chr1:24413521-24413229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
42-295
               

               
Cow position:
               
chr1:71643591-71643858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
42-299
               

               
Cow position:
               
chr1:724810-724536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
90, 198
               

               
Conread position:
               
42-303
               

               
Cow position:
               
chr1:10942024-10942294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
82, 152
               

               
Conread position:
               
42-303
               

               
Cow position:
               
chr1:10964362-10964092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
82, 152
               

               
Conread position:
               
42-303
               

               
Cow position:
               
chr1:63138911-63138636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:31348367-31348644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:52052647-52052907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 174
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:52435342-52435067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:63595984-63596263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 136
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:68845420-68845689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 37
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:70828976-70828709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
33, 146
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:73584340-73584605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
80, 24
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:81228263-81228543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
13, 216
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:85361921-85361652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 87
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:90864223-90864503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:91816701-91816977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
80, 111
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:92436920-92437194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:94212297-94212030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
22, 92
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:95654642-95654919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
5, 143
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:96478770-96478492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
70, 228
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr1:100421895-100421640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
165, 94
               

               
Conread position:
               
42-305
               

               
Cow position:
               
chr1:58889225-58889500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
42-305
               

               
Cow position:
               
chr1:101916236-101915962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
161, 102
               

               
Conread position:
               
42-325
               

               
Cow position:
               
chr1:26178741-26179039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
80, 150
               

               
Conread position:
               
43-281
               

               
Cow position:
               
chr1:99061854-99062102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
89, 20
               

               
Conread position:
               
43-292
               

               
Cow position:
               
chr1:13810717-13810457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 246
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr1:42968249-42968521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
5, 83
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr1:52753090-52753369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr1:57305889-57305629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr1:57637427-57637169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr1:61176248-61175980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
5, 73
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr1:63390697-63390977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr1:71747950-71748210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr1:92370299-92370564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
43-305
               

               
Cow position:
               
chr1:72103920-72103642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
45-300
               

               
Cow position:
               
chr1:1991351-1991624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
31, 54
               

               
Conread position:
               
45-303
               

               
Cow position:
               
chr1:76019629-76019884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 27
               

               
Conread position:
               
45-304
               

               
Cow position:
               
chr1:33996857-33997115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
215, 91
               

               
Conread position:
               
45-304
               

               
Cow position:
               
chr1:78092104-78091833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
87, 229
               

               
Conread position:
               
46-316
               

               
Cow position:
               
chr1:95101020-95100744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
86, 59
               

               
Conread position:
               
47-303
               

               
Cow position:
               
chr1:52487915-52488165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
158, 82
               

               
Conread position:
               
47-304
               

               
Cow position:
               
chr1:1916162-1916438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
47-304
               

               
Cow position:
               
chr1:21577874-21577601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
47-304
               

               
Cow position:
               
chr1:51628448-51628705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
148, 35
               

               
Conread position:
               
47-304
               

               
Cow position:
               
chr1:85867654-85867390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
148, 82
               

               
Conread position:
               
48-239
               

               
Cow position:
               
chr1:85301481-85301280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 55
               

               
Conread position:
               
48-304
               

               
Cow position:
               
chr1:89937304-89937564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
140, 73
               

               
Conread position:
               
49-300
               

               
Cow position:
               
chr1:54199316-54199583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
49-304
               

               
Cow position:
               
chr1:51968525-51968267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
83, 51
               

               
Conread position:
               
49-304
               

               
Cow position:
               
chr1:57639452-57639724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
51-304
               

               
Cow position:
               
chr1:99136369-99136634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
78, 53
               

               
Conread position:
               
52-304
               

               
Cow position:
               
chr1:26729778-26729524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
80, 140
               

               
Conread position:
               
52-304
               

               
Cow position:
               
chr1:99614506-99614244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
54-254
               

               
Cow position:
               
chr1:426872-427074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
31, 43
               

               
Conread position:
               
54-278
               

               
Cow position:
               
chr1:24445570-24445806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
75, 31
               

               
Conread position:
               
54-300
               

               
Cow position:
               
chr1:60032541-60032798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
54-302
               

               
Cow position:
               
chr1:44155308-44155061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 115
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr1:635252-634988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr1:10655539-10655274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
85, 9
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr1:57395878-57396130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
149, 89
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr1:61564851-61564589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
67, 35
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr1:97755578-97755318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
77, 200
               

               
Conread position:
               
55-265
               

               
Cow position:
               
chr1:89508606-89508392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
146, 73
               

               
Conread position:
               
55-304
               

               
Cow position:
               
chr1:77620603-77620347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
77, 150
               

               
Conread position:
               
56-296
               

               
Cow position:
               
chr1:82443399-82443652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
58-304
               

               
Cow position:
               
chr1:24235465-24235724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
74, 100
               

               
Conread position:
               
60-188
               

               
Cow position:
               
chr1:41695654-41695518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
63-304
               

               
Cow position:
               
chr1:68217312-68217562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
64-265
               

               
Cow position:
               
chr1:70028628-70028418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
64-304
               

               
Cow position:
               
chr1:71045803-71045551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
65-304
               

               
Cow position:
               
chr1:98563209-98562957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
67, 133
               

               
Conread position:
               
66-277
               

               
Cow position:
               
chr1:80631745-80631522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 114
               

               
Conread position:
               
66-304
               

               
Cow position:
               
chr1:45535753-45535498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
67-304
               

               
Cow position:
               
chr1:43447784-43448026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
58, 18
               

               
Conread position:
               
67-304
               

               
Cow position:
               
chr1:95017484-95017719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
68-285
               

               
Cow position:
               
chr1:99039311-99039537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8.99999e-40
               

               
Alignm gaps (pig, cow):
               
64, 115
               

               
Conread position:
               
69-304
               

               
Cow position:
               
chr1:62920211-62919973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
54, 168
               

               
Conread position:
               
70-304
               

               
Cow position:
               
chr1:55163961-55163719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
88, 79
               

               
Conread position:
               
72-304
               

               
Cow position:
               
chr1:99807685-99807927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
73-304
               

               
Cow position:
               
chr1:22448542-22448790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
73-304
               

               
Cow position:
               
chr1:43379985-43380232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
73-304
               

               
Cow position:
               
chr1:73561608-73561853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 98
               

               
Conread position:
               
77-300
               

               
Cow position:
               
chr1:81471168-81470929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 39
               

               
Conread position:
               
82-304
               

               
Cow position:
               
chr1:47009065-47008827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
10, 174
               

               
Conread position:
               
84-304
               

               
Cow position:
               
chr1:3340966-3340734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 109
               

               
Conread position:
               
85-304
               

               
Cow position:
               
chr1:1403454-1403675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
47, 175
               

               
Conread position:
               
85-304
               

               
Cow position:
               
chr1:11770265-11770497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
85-304
               

               
Cow position:
               
chr1:80870142-80869903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
85-305
               

               
Cow position:
               
chr1:3034972-3035197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
118, 58
               

               
Conread position:
               
86-304
               

               
Cow position:
               
chr1:29671495-29671727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
86-304
               

               
Cow position:
               
chr1:84239083-84239310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 167
               

               
Conread position:
               
88-293
               

               
Cow position:
               
chr1:83593784-83594000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
88-304
               

               
Cow position:
               
chr1:666390-666157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
41, 180
               

               
Conread position:
               
89-304
               

               
Cow position:
               
chr1:53540414-53540187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
89-304
               

               
Cow position:
               
chr1:63905451-63905677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
51, 156
               

               
Conread position:
               
89-304
               

               
Cow position:
               
chr1:71818439-71818665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
89-304
               

               
Cow position:
               
chr1:78783571-78783343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 76
               

               
Conread position:
               
89-304
               

               
Cow position:
               
chr1:84240915-84240696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 155
               

               
Conread position:
               
91-303
               

               
Cow position:
               
chr1:24655979-24655757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
95-303
               

               
Cow position:
               
chr1:71946353-71946573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
95-303
               

               
Cow position:
               
chr1:84170493-84170285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
95-304
               

               
Cow position:
               
chr1:79663656-79663869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 69
               

               
Conread position:
               
95-305
               

               
Cow position:
               
chr1:33811941-33811730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
15, 78
               

               
Conread position:
               
96-304
               

               
Cow position:
               
chr1:12595885-12596104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 171
               

               
Conread position:
               
96-304
               

               
Cow position:
               
chr1:52563793-52563994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 94
               

               
Conread position:
               
96-304
               

               
Cow position:
               
chr1:99118387-99118182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
97-304
               

               
Cow position:
               
chr1:57900726-57900944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
97-304
               

               
Cow position:
               
chr1:94404229-94404013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
35, 171
               

               
Conread position:
               
97-305
               

               
Cow position:
               
chr1:61725099-61725317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
35, 63
               

               
Conread position:
               
99-304
               

               
Cow position:
               
chr1:32013967-32013753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 170
               

               
Conread position:
               
100-304
               

               
Cow position:
               
chr1:75967443-75967233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 166
               

               
Conread position:
               
100-304
               

               
Cow position:
               
chr1:95057066-95056852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
102-304
               

               
Cow position:
               
chr1:3661054-3661259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
103-303
               

               
Cow position:
               
chr1:5872958-5873174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
103-305
               

               
Cow position:
               
chr1:100537812-100537606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
143, 33
               

               
Conread position:
               
105-304
               

               
Cow position:
               
chr1:41004353-41004571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
106-304
               

               
Cow position:
               
chr1:20521693-20521886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
107-287
               

               
Cow position:
               
chr1:89083110-89082921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 20
               

               
Conread position:
               
107-303
               

               
Cow position:
               
chr1:76222683-76222893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
116-304
               

               
Cow position:
               
chr1:95327160-95327356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
118-301
               

               
Cow position:
               
chr1:15308022-15307834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 99
               

               
Conread position:
               
118-304
               

               
Cow position:
               
chr1:26159444-26159635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
122-304
               

               
Cow position:
               
chr1:46939872-46940065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
123-293
               

               
Cow position:
               
chr1:102113118-102113301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
123-295
               

               
Cow position:
               
chr1:73522164-73522338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 82
               

               
Conread position:
               
123-303
               

               
Cow position:
               
chr1:87216442-87216260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
80, 26
               

               
Conread position:
               
123-304
               

               
Cow position:
               
chr1:50634419-50634609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
123-304
               

               
Cow position:
               
chr1:52774550-52774724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
124-300
               

               
Cow position:
               
chr1:20288101-20287915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
124-303
               

               
Cow position:
               
chr1:56643607-56643791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
125-304
               

               
Cow position:
               
chr1:51836550-51836368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
129-304
               

               
Cow position:
               
chr1:26895849-26896028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
74, 125
               

               
Conread position:
               
129-304
               

               
Cow position:
               
chr1:30882356-30882519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
129-304
               

               
Cow position:
               
chr1:56748571-56748386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
74, 7
               

               
Conread position:
               
129-304
               

               
Cow position:
               
chr1:98348338-98348510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
135, 61
               

               
Conread position:
               
131-304
               

               
Cow position:
               
chr1:69415737-69415921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
59, 167
               

               
Conread position:
               
132-305
               

               
Cow position:
               
chr1:81179997-81180184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
135-306
               

               
Cow position:
               
chr1:98708412-98708237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 118
               

               
Conread position:
               
136-304
               

               
Cow position:
               
chr1:58882051-58882213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
78, 41
               

               
Conread position:
               
137-299
               

               
Cow position:
               
chr1:25119061-25119220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
137-302
               

               
Cow position:
               
chr1:85783494-85783324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
137-303
               

               
Cow position:
               
chr1:4294025-4293860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
137-304
               

               
Cow position:
               
chr1:8869693-8869868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
137-304
               

               
Cow position:
               
chr1:53039731-53039903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
54, 104
               

               
Conread position:
               
138-304
               

               
Cow position:
               
chr1:25886109-25886278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 105
               

               
Conread position:
               
139-304
               

               
Cow position:
               
chr1:53410948-53411113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
142-304
               

               
Cow position:
               
chr1:26201184-26201017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
143-301
               

               
Cow position:
               
chr1:6322168-6322010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
57, 65
               

               
Conread position:
               
143-301
               

               
Cow position:
               
chr1:49753892-49753730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
25, 21
               

               
Conread position:
               
143-304
               

               
Cow position:
               
chr1:36874977-36874812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 156
               

               
Conread position:
               
149-304
               

               
Cow position:
               
chr1:19545141-19545303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
155-304
               

               
Cow position:
               
chr1:19998089-19998239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
158-301
               

               
Cow position:
               
chr1:36613326-36613475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
158-305
               

               
Cow position:
               
chr1:30504420-30504266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 81
               

               
Conread position:
               
160-302
               

               
Cow position:
               
chr1:89437992-89438137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
189-300
               

               
Cow position:
               
chr1:99104971-99105083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
202-304
               

               
Cow position:
               
chr1:62996393-62996291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
209-302
               

               
Cow position:
               
chr1:95071877-95071784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
209-304
               

               
Cow position:
               
chr1:3872743-3872648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
96
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.