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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01A040047.5
        

               
Conread position:
               
4-281
               

               
Cow position:
               
chr11:72375598-72375894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
6, 34
               

               
Conread position:
               
4-293
               

               
Cow position:
               
chr11:65762510-65762814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
100, 35
               

               
Conread position:
               
4-304
               

               
Cow position:
               
chr11:1668763-1668449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
9, 142
               

               
Conread position:
               
5-246
               

               
Cow position:
               
chr11:75874675-75874921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 34
               

               
Conread position:
               
5-299
               

               
Cow position:
               
chr11:36647423-36647137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
195, 34
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr11:39115578-39115265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
6-130
               

               
Cow position:
               
chr11:36328956-36329076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
6-165
               

               
Cow position:
               
chr11:33409183-33409343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
6-165
               

               
Cow position:
               
chr11:72884518-72884669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr11:65767278-65767084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
122, 33
               

               
Conread position:
               
6-198
               

               
Cow position:
               
chr11:39060524-39060716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
126, 18
               

               
Conread position:
               
6-221
               

               
Cow position:
               
chr11:23407543-23407317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
6-270
               

               
Cow position:
               
chr11:71492783-71493050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
6-295
               

               
Cow position:
               
chr11:2907450-2907742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
139, 25
               

               
Conread position:
               
6-295
               

               
Cow position:
               
chr11:59702569-59702265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 174
               

               
Conread position:
               
6-298
               

               
Cow position:
               
chr11:23586717-23586413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr11:9221653-9221954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr11:10992345-10992053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
197, 36
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr11:11125742-11125435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 33
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr11:17321729-17321429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 48
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr11:44636675-44636989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 33
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr11:58588423-58588116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
126, 25
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr11:62239823-62239521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 31
               

               
Conread position:
               
6-305
               

               
Cow position:
               
chr11:30476077-30475769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
39, 47
               

               
Conread position:
               
7-126
               

               
Cow position:
               
chr11:30894926-30895040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
7-130
               

               
Cow position:
               
chr11:16801879-16801993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
7-130
               

               
Cow position:
               
chr11:30483997-30483878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
7-133
               

               
Cow position:
               
chr11:18915104-18914981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
104, 32
               

               
Conread position:
               
7-138
               

               
Cow position:
               
chr11:21885910-21885785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-140
               

               
Cow position:
               
chr11:53279637-53279765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
7-142
               

               
Cow position:
               
chr11:34413262-34413394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-143
               

               
Cow position:
               
chr11:72292630-72292499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
7-163
               

               
Cow position:
               
chr11:28168345-28168505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
7-164
               

               
Cow position:
               
chr11:82740587-82740426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
7-166
               

               
Cow position:
               
chr11:17721724-17721888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
7-166
               

               
Cow position:
               
chr11:63866581-63866738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
12, 33
               

               
Conread position:
               
7-175
               

               
Cow position:
               
chr11:64406306-64406133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
129, 34
               

               
Conread position:
               
7-176
               

               
Cow position:
               
chr11:8437616-8437783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
114, 35
               

               
Conread position:
               
7-176
               

               
Cow position:
               
chr11:17676295-17676464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
7-176
               

               
Cow position:
               
chr11:24599311-24599483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
127, 11
               

               
Conread position:
               
7-186
               

               
Cow position:
               
chr11:32690893-32691067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 32
               

               
Conread position:
               
7-189
               

               
Cow position:
               
chr11:17036450-17036636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
122, 35
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr11:30494071-30493890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 14
               

               
Conread position:
               
7-191
               

               
Cow position:
               
chr11:62812872-62813060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-199
               

               
Cow position:
               
chr11:47772312-47772508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-199
               

               
Cow position:
               
chr11:62789208-62789012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
117, 32
               

               
Conread position:
               
7-200
               

               
Cow position:
               
chr11:6194283-6194088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-200
               

               
Cow position:
               
chr11:63999014-63999207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr11:5201574-5201758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr11:41293740-41293937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-201
               

               
Cow position:
               
chr11:67614844-67615047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
108, 32
               

               
Conread position:
               
7-202
               

               
Cow position:
               
chr11:83032758-83032564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
125, 31
               

               
Conread position:
               
7-204
               

               
Cow position:
               
chr11:40608517-40608718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
120, 32
               

               
Conread position:
               
7-207
               

               
Cow position:
               
chr11:35803214-35803009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
122, 65
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr11:69075988-69075764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
7-224
               

               
Cow position:
               
chr11:86720341-86720559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
7-228
               

               
Cow position:
               
chr11:70250996-70250774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
17, 21
               

               
Conread position:
               
7-229
               

               
Cow position:
               
chr11:18851985-18851766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
196, 32
               

               
Conread position:
               
7-231
               

               
Cow position:
               
chr11:69978048-69977830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-234
               

               
Cow position:
               
chr11:39499434-39499201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
7-237
               

               
Cow position:
               
chr11:45435158-45434926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
84, 32
               

               
Conread position:
               
7-242
               

               
Cow position:
               
chr11:48296108-48295867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-254
               

               
Cow position:
               
chr11:62226064-62225810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
7-256
               

               
Cow position:
               
chr11:5541-5287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
136, 32
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr11:26845516-26845765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
134, 32
               

               
Conread position:
               
7-261
               

               
Cow position:
               
chr11:42296542-42296804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr11:48496515-48496775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
7-277
               

               
Cow position:
               
chr11:13040094-13040354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-294
               

               
Cow position:
               
chr11:15382425-15382687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
265, 31
               

               
Conread position:
               
7-294
               

               
Cow position:
               
chr11:36238855-36238563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr11:17661161-17660872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
87, 32
               

               
Conread position:
               
7-298
               

               
Cow position:
               
chr11:55052949-55052653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
7-300
               

               
Cow position:
               
chr11:30934494-30934200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
124, 22
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr11:48544519-48544217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr11:76606750-76606460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr11:29960373-29960078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr11:62150816-62151108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr11:64044311-64044012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 31
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr11:41257-40953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
125, 39
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr11:8525037-8525341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr11:11558249-11557942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr11:20238754-20238445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
96, 25
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr11:35873925-35874213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
196, 27
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr11:50778445-50778143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
7-303
               

               
Cow position:
               
chr11:82940547-82940845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:377564-377877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:952346-952040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:2917509-2917808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 12
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:7590266-7589962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
125, 33
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:8428589-8428266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:11232378-11232681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
116, 24
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:15017134-15016817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
96, 28
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:16342151-16342470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:17083232-17083526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:17227567-17227868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:17278598-17278891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
154, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:22499289-22499580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
164, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:23128462-23128768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 35
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:24602048-24601742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 123
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:27404997-27405297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
125, 34
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:27747001-27746692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:28644165-28643853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:30192256-30191941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
86, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:30355136-30354838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:30638872-30639177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
147, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:31352474-31352801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
80, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:34829708-34830008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
103, 31
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:34963147-34962833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
114, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:35363559-35363266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
196, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:35580338-35580025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
107, 40
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:36658745-36659041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:41809415-41809706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
196, 25
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:43360706-43361025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:43898216-43897909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:44032089-44031771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:45631688-45631993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
131, 35
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:45646516-45646822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
122, 20
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:48272278-48271966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:49153026-49152725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:50152736-50153047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:51144791-51144489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
131, 30
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:52297143-52297452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:52380794-52381099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:62620454-62620156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:62663157-62663461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
199, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:63469953-63469654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:64090019-64090315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 31
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:65157330-65157636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:68206764-68207066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:69119371-69119071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:73924484-73924787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 44
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:80819927-80820227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:80923246-80923563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:83043285-83043589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:83066565-83066267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr11:83230323-83230616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr11:18698957-18698645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
114, 32
               

               
Conread position:
               
7-306
               

               
Cow position:
               
chr11:27248568-27248261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 25
               

               
Conread position:
               
7-311
               

               
Cow position:
               
chr11:66424802-66425125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
8-304
               

               
Cow position:
               
chr11:32436410-32436100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
125, 27
               

               
Conread position:
               
8-315
               

               
Cow position:
               
chr11:2509229-2509535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
9-298
               

               
Cow position:
               
chr11:39462699-39462395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
115, 30
               

               
Conread position:
               
10-140
               

               
Cow position:
               
chr11:48248141-48248269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
119, 28
               

               
Conread position:
               
10-147
               

               
Cow position:
               
chr11:18447417-18447553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
10-148
               

               
Cow position:
               
chr11:19606652-19606512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
10-200
               

               
Cow position:
               
chr11:84490425-84490607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
10-202
               

               
Cow position:
               
chr11:49872813-49873006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
10-245
               

               
Cow position:
               
chr11:55494754-55494514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
126, 29
               

               
Conread position:
               
10-252
               

               
Cow position:
               
chr11:30830539-30830791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
113, 29
               

               
Conread position:
               
10-292
               

               
Cow position:
               
chr11:52983750-52983474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
10-293
               

               
Cow position:
               
chr11:41985971-41986261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
10-300
               

               
Cow position:
               
chr11:53778691-53778388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
10-302
               

               
Cow position:
               
chr11:13061161-13061450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
123, 17
               

               
Conread position:
               
10-302
               

               
Cow position:
               
chr11:66188242-66188547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
10-302
               

               
Cow position:
               
chr11:77319489-77319197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
117, 29
               

               
Conread position:
               
10-303
               

               
Cow position:
               
chr11:2084218-2083920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
10-303
               

               
Cow position:
               
chr11:47545206-47544900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
122, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:259097-259407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
115, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:17831147-17831456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
131, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:33341070-33341374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:34467641-34467374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
193, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:44222960-44222672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:48474778-48474480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:50073012-50072733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:73512368-73512648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 32
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:80564368-80564076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr11:81162358-81162660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
119, 29
               

               
Conread position:
               
10-305
               

               
Cow position:
               
chr11:36987024-36986732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
109, 29
               

               
Conread position:
               
10-305
               

               
Cow position:
               
chr11:74316784-74316476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
11-134
               

               
Cow position:
               
chr11:897747-897628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
11-201
               

               
Cow position:
               
chr11:80537561-80537368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
121, 25
               

               
Conread position:
               
11-231
               

               
Cow position:
               
chr11:35213094-35213315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
117, 20
               

               
Conread position:
               
11-260
               

               
Cow position:
               
chr11:30955074-30954815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
11-265
               

               
Cow position:
               
chr11:34646663-34646403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 28
               

               
Conread position:
               
11-281
               

               
Cow position:
               
chr11:25387142-25386860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
81, 28
               

               
Conread position:
               
11-295
               

               
Cow position:
               
chr11:35684427-35684717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
11-299
               

               
Cow position:
               
chr11:19500718-19501001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr11:1071017-1071318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
120, 28
               

               
Conread position:
               
11-303
               

               
Cow position:
               
chr11:15285541-15285845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
117, 31
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr11:3393136-3393439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 31
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr11:11469574-11469862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
155, 28
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr11:20761916-20761616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr11:34121273-34120969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
115, 20
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr11:35153750-35154056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr11:36182768-36182460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
60, 27
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr11:40818553-40818867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr11:44036793-44036487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr11:47899342-47899048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 31
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chr11:65607617-65607905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
85, 8
               

               
Conread position:
               
12-304
               

               
Cow position:
               
chr11:34113337-34113046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
69, 8
               

               
Conread position:
               
12-304
               

               
Cow position:
               
chr11:70620117-70619827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
119, 27
               

               
Conread position:
               
13-260
               

               
Cow position:
               
chr11:82796217-82796469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
13-293
               

               
Cow position:
               
chr11:69810975-69810686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
131, 26
               

               
Conread position:
               
13-301
               

               
Cow position:
               
chr11:45897978-45898281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
73, 18
               

               
Conread position:
               
13-302
               

               
Cow position:
               
chr11:44234427-44234128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 21
               

               
Conread position:
               
14-190
               

               
Cow position:
               
chr11:69392633-69392450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
14-292
               

               
Cow position:
               
chr11:42043925-42044207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
122, 25
               

               
Conread position:
               
14-294
               

               
Cow position:
               
chr11:46746704-46746416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 42
               

               
Conread position:
               
15-189
               

               
Cow position:
               
chr11:75965582-75965756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
115, 27
               

               
Conread position:
               
15-239
               

               
Cow position:
               
chr11:17493553-17493316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 162
               

               
Conread position:
               
15-257
               

               
Cow position:
               
chr11:9270656-9270908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
15-298
               

               
Cow position:
               
chr11:2092404-2092118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
114, 24
               

               
Conread position:
               
15-301
               

               
Cow position:
               
chr11:9970917-9971193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 45
               

               
Conread position:
               
15-303
               

               
Cow position:
               
chr11:8988161-8988457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
15-303
               

               
Cow position:
               
chr11:41272207-41271911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 23
               

               
Conread position:
               
15-303
               

               
Cow position:
               
chr11:80530428-80530143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr11:1362398-1362709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
114, 27
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr11:21844062-21844364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 65
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr11:30879737-30879451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr11:42359190-42358896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
18, 180
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr11:64638456-64638752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
114, 16
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr11:70609867-70609559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
64, 19
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr11:73353990-73354282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
188, 24
               

               
Conread position:
               
16-304
               

               
Cow position:
               
chr11:33311046-33310743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 150
               

               
Conread position:
               
16-308
               

               
Cow position:
               
chr11:67550309-67550596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
123, 23
               

               
Conread position:
               
17-168
               

               
Cow position:
               
chr11:54218785-54218631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
115, 10
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr11:38639179-38638892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
173, 22
               

               
Conread position:
               
18-305
               

               
Cow position:
               
chr11:48697520-48697218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
26-260
               

               
Cow position:
               
chr11:15373905-15373668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
11, 107
               

               
Conread position:
               
26-303
               

               
Cow position:
               
chr11:36799241-36799526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 227
               

               
Conread position:
               
26-304
               

               
Cow position:
               
chr11:53553282-53553023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 99
               

               
Conread position:
               
27-304
               

               
Cow position:
               
chr11:16000985-16000697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr11:10213506-10213796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
98, 149
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr11:31225754-31226022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
75, 99
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr11:53313512-53313797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 77
               

               
Conread position:
               
32-304
               

               
Cow position:
               
chr11:44642231-44642514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
91, 25
               

               
Conread position:
               
32-304
               

               
Cow position:
               
chr11:76114702-76114426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 5
               

               
Conread position:
               
33-304
               

               
Cow position:
               
chr11:37278168-37278428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
227, 96
               

               
Conread position:
               
34-236
               

               
Cow position:
               
chr11:71390506-71390723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
34-304
               

               
Cow position:
               
chr11:46580413-46580138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 217
               

               
Conread position:
               
36-127
               

               
Cow position:
               
chr11:16842931-16843022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
36-164
               

               
Cow position:
               
chr11:36914674-36914802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
103, 92
               

               
Conread position:
               
36-248
               

               
Cow position:
               
chr11:16906998-16907214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 36
               

               
Conread position:
               
36-264
               

               
Cow position:
               
chr11:67600837-67600595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
36-270
               

               
Cow position:
               
chr11:49231926-49231684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
96, 171
               

               
Conread position:
               
36-274
               

               
Cow position:
               
chr11:15339116-15338876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
89, 113
               

               
Conread position:
               
36-285
               

               
Cow position:
               
chr11:63434005-63434268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
36-286
               

               
Cow position:
               
chr11:36286748-36286488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 211
               

               
Conread position:
               
36-288
               

               
Cow position:
               
chr11:4207364-4207100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
92, 142
               

               
Conread position:
               
36-294
               

               
Cow position:
               
chr11:61858850-61859118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
88, 158
               

               
Conread position:
               
36-301
               

               
Cow position:
               
chr11:67804802-67804523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
92, 139
               

               
Conread position:
               
36-303
               

               
Cow position:
               
chr11:44575692-44575964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
84, 144
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:1849118-1849394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
145, 93
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:3234128-3233852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
116, 93
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:3833310-3833576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
98, 46
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:8840695-8840969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
93, 47
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:11533876-11534132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
220, 40
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:18572853-18572575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:21497575-21497312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
90, 173
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:22977821-22978088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
92, 159
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:23138002-23138290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
62, 46
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:24937718-24937433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:30120609-30120890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 52
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:33348134-33348413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
88, 81
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:54334381-54334106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:58400301-58400035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
143, 43
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:70836323-70836596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 148
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr11:83323616-83323345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
165, 112
               

               
Conread position:
               
36-310
               

               
Cow position:
               
chr11:38874349-38874635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
93, 266
               

               
Conread position:
               
37-201
               

               
Cow position:
               
chr11:64867969-64868133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
55, 59
               

               
Conread position:
               
37-216
               

               
Cow position:
               
chr11:67615195-67615382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
37-270
               

               
Cow position:
               
chr11:13592787-13592544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
86, 241
               

               
Conread position:
               
37-285
               

               
Cow position:
               
chr11:61958692-61958959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
92, 126
               

               
Conread position:
               
37-295
               

               
Cow position:
               
chr11:19591943-19592218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
95, 69
               

               
Conread position:
               
37-296
               

               
Cow position:
               
chr11:10095395-10095124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
37-300
               

               
Cow position:
               
chr11:80521001-80520744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
218, 66
               

               
Conread position:
               
37-302
               

               
Cow position:
               
chr11:62490490-62490207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
59, 220
               

               
Conread position:
               
37-303
               

               
Cow position:
               
chr11:62573957-62574226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 205
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:10620276-10620554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
45, 194
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:19247148-19247423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
92, 38
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:36112471-36112189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
104, 42
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:55761920-55761650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
97, 165
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:63065704-63065425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
97, 45
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:63482378-63482654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:63847898-63847621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
95, 204
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:65409102-65409386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
92, 49
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:67747336-67747053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr11:71168538-71168806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
95, 162
               

               
Conread position:
               
37-309
               

               
Cow position:
               
chr11:53773733-53773439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
37-317
               

               
Cow position:
               
chr11:7874190-7873912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
140, 91
               

               
Conread position:
               
37-317
               

               
Cow position:
               
chr11:18340989-18341280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
55, 44
               

               
Conread position:
               
37-319
               

               
Cow position:
               
chr11:77546467-77546175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 159
               

               
Conread position:
               
38-252
               

               
Cow position:
               
chr11:28993687-28993904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
163, 201
               

               
Conread position:
               
38-301
               

               
Cow position:
               
chr11:18144766-18145033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 148
               

               
Conread position:
               
38-304
               

               
Cow position:
               
chr11:1625173-1625443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
94, 154
               

               
Conread position:
               
40-304
               

               
Cow position:
               
chr11:6835582-6835300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 43
               

               
Conread position:
               
40-304
               

               
Cow position:
               
chr11:21549529-21549267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
97, 169
               

               
Conread position:
               
40-304
               

               
Cow position:
               
chr11:34616309-34616040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
8, 86
               

               
Conread position:
               
40-304
               

               
Cow position:
               
chr11:45872262-45872547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
81, 75
               

               
Conread position:
               
41-303
               

               
Cow position:
               
chr11:42519782-42519514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
99, 38
               

               
Conread position:
               
41-304
               

               
Cow position:
               
chr11:38845214-38845484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
84, 151
               

               
Conread position:
               
41-304
               

               
Cow position:
               
chr11:47193562-47193295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
74, 31
               

               
Conread position:
               
41-304
               

               
Cow position:
               
chr11:50951605-50951322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
83, 242
               

               
Conread position:
               
41-304
               

               
Cow position:
               
chr11:54856664-54856406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 88
               

               
Conread position:
               
42-264
               

               
Cow position:
               
chr11:21438255-21438028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
161, 101
               

               
Conread position:
               
42-269
               

               
Cow position:
               
chr11:7497600-7497837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
56, 66
               

               
Conread position:
               
42-300
               

               
Cow position:
               
chr11:56728996-56728722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
42-301
               

               
Cow position:
               
chr11:8147852-8148113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 234
               

               
Conread position:
               
42-303
               

               
Cow position:
               
chr11:32595504-32595239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
164, 87
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:866337-866071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:4323405-4323138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
80, 167
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:4436366-4436104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
165, 104
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:4732389-4732110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
89, 199
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:6233833-6234107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:14308686-14308409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
81, 248
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:21728229-21728496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 33
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:26483758-26483490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:32378234-32377959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:55744514-55744245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
96, 145
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:63156871-63157141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
148, 85
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:70304116-70303853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
112, 65
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr11:79728621-79728902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
42-305
               

               
Cow position:
               
chr11:34032156-34032427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
82, 24
               

               
Conread position:
               
43-303
               

               
Cow position:
               
chr11:57724778-57725056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr11:13043099-13043370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 153
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr11:17860109-17860382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr11:18588539-18588809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
5, 169
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr11:25783519-25783263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr11:68909809-68910076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 50
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr11:81300574-81300841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 82
               

               
Conread position:
               
44-304
               

               
Cow position:
               
chr11:30911957-30912221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 84
               

               
Conread position:
               
45-289
               

               
Cow position:
               
chr11:25331701-25331953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 34
               

               
Conread position:
               
45-303
               

               
Cow position:
               
chr11:7315105-7315354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
45-304
               

               
Cow position:
               
chr11:3780374-3780653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 126
               

               
Conread position:
               
45-304
               

               
Cow position:
               
chr11:15504156-15503872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
81, 71
               

               
Conread position:
               
45-304
               

               
Cow position:
               
chr11:55333953-55333680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
45-305
               

               
Cow position:
               
chr11:85723741-85723472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
87, 209
               

               
Conread position:
               
46-221
               

               
Cow position:
               
chr11:261225-261402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
46-304
               

               
Cow position:
               
chr11:66733872-66733607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
46-305
               

               
Cow position:
               
chr11:15632511-15632789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
47-270
               

               
Cow position:
               
chr11:20684530-20684769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 237
               

               
Conread position:
               
47-295
               

               
Cow position:
               
chr11:5031734-5031997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
47-304
               

               
Cow position:
               
chr11:33349659-33349930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
49-290
               

               
Cow position:
               
chr11:2811690-2811938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
82, 221
               

               
Conread position:
               
49-302
               

               
Cow position:
               
chr11:23232475-23232740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
37, 194
               

               
Conread position:
               
49-304
               

               
Cow position:
               
chr11:11752477-11752748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
49-304
               

               
Cow position:
               
chr11:14649274-14649541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 194
               

               
Conread position:
               
51-304
               

               
Cow position:
               
chr11:18210310-18210577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
59, 67
               

               
Conread position:
               
52-273
               

               
Cow position:
               
chr11:8936458-8936681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
76, 14
               

               
Conread position:
               
53-295
               

               
Cow position:
               
chr11:2925260-2925510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
79, 90
               

               
Conread position:
               
54-210
               

               
Cow position:
               
chr11:37369715-37369555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
75, 9
               

               
Conread position:
               
54-270
               

               
Cow position:
               
chr11:48041998-48042233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
54-295
               

               
Cow position:
               
chr11:61246424-61246677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
71, 226
               

               
Conread position:
               
54-299
               

               
Cow position:
               
chr11:81406134-81406381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 28
               

               
Conread position:
               
54-301
               

               
Cow position:
               
chr11:81138246-81138000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 72
               

               
Conread position:
               
54-302
               

               
Cow position:
               
chr11:36114191-36113931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
54-302
               

               
Cow position:
               
chr11:65431089-65430835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
56, 91
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr11:8339371-8339633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr11:18591399-18591662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 230
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr11:40467091-40467352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
137, 75
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr11:62155673-62155398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 244
               

               
Conread position:
               
54-305
               

               
Cow position:
               
chr11:17889696-17889956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
78, 104
               

               
Conread position:
               
56-247
               

               
Cow position:
               
chr11:85986140-85986341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
70, 5
               

               
Conread position:
               
56-304
               

               
Cow position:
               
chr11:75355653-75355381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 132
               

               
Conread position:
               
57-305
               

               
Cow position:
               
chr11:6154440-6154182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
72, 24
               

               
Conread position:
               
58-304
               

               
Cow position:
               
chr11:60301930-60302186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
58-304
               

               
Cow position:
               
chr11:64029232-64029485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
59-304
               

               
Cow position:
               
chr11:955397-955141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
70, 222
               

               
Conread position:
               
60-304
               

               
Cow position:
               
chr11:42792944-42793204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
64-304
               

               
Cow position:
               
chr11:81174909-81174661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
81, 18
               

               
Conread position:
               
65-304
               

               
Cow position:
               
chr11:40485911-40486162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 103
               

               
Conread position:
               
66-229
               

               
Cow position:
               
chr11:75918356-75918190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
134, 67
               

               
Conread position:
               
66-303
               

               
Cow position:
               
chr11:73478632-73478393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 67
               

               
Conread position:
               
67-201
               

               
Cow position:
               
chr11:33824866-33825009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
69-303
               

               
Cow position:
               
chr11:50197413-50197672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
69-304
               

               
Cow position:
               
chr11:16251224-16251477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
60, 187
               

               
Conread position:
               
69-304
               

               
Cow position:
               
chr11:18388853-18389091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 79
               

               
Conread position:
               
69-304
               

               
Cow position:
               
chr11:83196517-83196270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
73-303
               

               
Cow position:
               
chr11:1485859-1486094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 56
               

               
Conread position:
               
73-304
               

               
Cow position:
               
chr11:48932571-48932812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
73-304
               

               
Cow position:
               
chr11:58990518-58990282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
52, 137
               

               
Conread position:
               
73-306
               

               
Cow position:
               
chr11:43989269-43989505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
65, 44
               

               
Conread position:
               
75-302
               

               
Cow position:
               
chr11:37068303-37068530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
68, 54
               

               
Conread position:
               
77-304
               

               
Cow position:
               
chr11:4412010-4412246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 83
               

               
Conread position:
               
82-296
               

               
Cow position:
               
chr11:1599379-1599166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
173, 96
               

               
Conread position:
               
82-305
               

               
Cow position:
               
chr11:4384625-4384395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
83-302
               

               
Cow position:
               
chr11:77208048-77207822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
43, 114
               

               
Conread position:
               
83-305
               

               
Cow position:
               
chr11:32610004-32609762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
85-294
               

               
Cow position:
               
chr11:26535775-26535556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
86-304
               

               
Cow position:
               
chr11:17968579-17968804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
86-304
               

               
Cow position:
               
chr11:67950969-67951190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
117, 41
               

               
Conread position:
               
89-304
               

               
Cow position:
               
chr11:59155877-59156100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
40, 76
               

               
Conread position:
               
90-304
               

               
Cow position:
               
chr11:1485360-1485589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
95-304
               

               
Cow position:
               
chr11:25165420-25165215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
96-304
               

               
Cow position:
               
chr11:55117457-55117244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 97
               

               
Conread position:
               
97-303
               

               
Cow position:
               
chr11:63516819-63516596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
97-304
               

               
Cow position:
               
chr11:53130805-53130583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
97-304
               

               
Cow position:
               
chr11:65857852-65857629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
97-304
               

               
Cow position:
               
chr11:85764927-85764723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
32, 131
               

               
Conread position:
               
100-303
               

               
Cow position:
               
chr11:41577031-41577236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
102, 159
               

               
Conread position:
               
101-304
               

               
Cow position:
               
chr11:25320044-25319822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
102-300
               

               
Cow position:
               
chr11:71309550-71309753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 27
               

               
Conread position:
               
103-304
               

               
Cow position:
               
chr11:68570683-68570900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 194
               

               
Conread position:
               
106-304
               

               
Cow position:
               
chr11:75748417-75748206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
107-295
               

               
Cow position:
               
chr11:62808670-62808868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
107-304
               

               
Cow position:
               
chr11:62749774-62749979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 67
               

               
Conread position:
               
108-291
               

               
Cow position:
               
chr11:18373056-18372862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
110-300
               

               
Cow position:
               
chr11:63520745-63520548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
93, 128
               

               
Conread position:
               
111-280
               

               
Cow position:
               
chr11:47851004-47850822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
118-304
               

               
Cow position:
               
chr11:8105745-8105554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
85, 36
               

               
Conread position:
               
123-304
               

               
Cow position:
               
chr11:2514636-2514821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
80, 20
               

               
Conread position:
               
129-304
               

               
Cow position:
               
chr11:7333768-7333950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
130-301
               

               
Cow position:
               
chr11:30867091-30866914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
73, 6
               

               
Conread position:
               
130-303
               

               
Cow position:
               
chr11:29946977-29947154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
130-304
               

               
Cow position:
               
chr11:19890814-19890653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
130-304
               

               
Cow position:
               
chr11:74929736-74929551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
131-304
               

               
Cow position:
               
chr11:24967406-24967232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 150
               

               
Conread position:
               
132-305
               

               
Cow position:
               
chr11:48901130-48901307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
137-301
               

               
Cow position:
               
chr11:17192336-17192507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
137-304
               

               
Cow position:
               
chr11:41598779-41598956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
138-304
               

               
Cow position:
               
chr11:19508240-19508069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 132
               

               
Conread position:
               
139-302
               

               
Cow position:
               
chr11:67293696-67293855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
140-304
               

               
Cow position:
               
chr11:84890807-84890981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
143-303
               

               
Cow position:
               
chr11:35276240-35276073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
143-303
               

               
Cow position:
               
chr11:71846406-71846576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
145-304
               

               
Cow position:
               
chr11:80825101-80824939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 112
               

               
Conread position:
               
155-304
               

               
Cow position:
               
chr11:38194082-38193923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
202-304
               

               
Cow position:
               
chr11:78480675-78480568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
204-295
               

               
Cow position:
               
chr11:375040-374949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
78
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
211-304
               

               
Cow position:
               
chr11:6329110-6329017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
94
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.