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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01A040047.5
        

               
Conread position:
               
3-301
               

               
Cow position:
               
chr29:15940533-15940846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
123, 29
               

               
Conread position:
               
5-270
               

               
Cow position:
               
chr29:10235039-10235302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
120, 33
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr29:41365204-41364902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
120, 34
               

               
Conread position:
               
5-304
               

               
Cow position:
               
chr29:4120951-4120634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr29:26615623-26615936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
6-304
               

               
Cow position:
               
chr29:32963631-32963343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
198, 32
               

               
Conread position:
               
7-127
               

               
Cow position:
               
chr29:22723694-22723578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-129
               

               
Cow position:
               
chr29:23825117-23825235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-140
               

               
Cow position:
               
chr29:17804627-17804502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-172
               

               
Cow position:
               
chr29:29324333-29324487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
7-174
               

               
Cow position:
               
chr29:23220408-23220577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
7-175
               

               
Cow position:
               
chr29:18012651-18012478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
7-221
               

               
Cow position:
               
chr29:34358885-34359108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
7-241
               

               
Cow position:
               
chr29:29176524-29176761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
128, 32
               

               
Conread position:
               
7-253
               

               
Cow position:
               
chr29:10156213-10156462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-270
               

               
Cow position:
               
chr29:5186400-5186671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 31
               

               
Conread position:
               
7-274
               

               
Cow position:
               
chr29:9310693-9310443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
7-277
               

               
Cow position:
               
chr29:41112788-41113045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
138, 24
               

               
Conread position:
               
7-284
               

               
Cow position:
               
chr29:19125415-19125152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
197, 32
               

               
Conread position:
               
7-284
               

               
Cow position:
               
chr29:32210978-32211251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
196, 35
               

               
Conread position:
               
7-285
               

               
Cow position:
               
chr29:26275699-26275421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
125, 22
               

               
Conread position:
               
7-290
               

               
Cow position:
               
chr29:11053767-11054051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
133, 32
               

               
Conread position:
               
7-293
               

               
Cow position:
               
chr29:11434212-11433922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
132, 35
               

               
Conread position:
               
7-294
               

               
Cow position:
               
chr29:29769258-29769547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
7-301
               

               
Cow position:
               
chr29:25737321-25737624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-302
               

               
Cow position:
               
chr29:31929080-31928769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:732710-732406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
122, 17
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:4520429-4520124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
117, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:4874787-4875114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
85, 22
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:8926368-8926670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 31
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:9709788-9709487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:12680249-12679943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:17110050-17109760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
196, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:19762361-19762061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
129, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:19949400-19949098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
105, 31
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:22162156-22162462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:23155319-23155039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
196, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:23983862-23984174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
125, 36
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:26778975-26778673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
68, 32
               

               
Conread position:
               
7-304
               

               
Cow position:
               
chr29:36217205-36216906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
7-305
               

               
Cow position:
               
chr29:11705205-11704910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
127, 32
               

               
Conread position:
               
7-309
               

               
Cow position:
               
chr29:45005536-45005835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
122, 32
               

               
Conread position:
               
8-304
               

               
Cow position:
               
chr29:40763602-40763896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
194, 21
               

               
Conread position:
               
9-304
               

               
Cow position:
               
chr29:39111221-39111519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
10-188
               

               
Cow position:
               
chr29:7624268-7624087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
10-210
               

               
Cow position:
               
chr29:5063235-5063031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
131, 32
               

               
Conread position:
               
10-230
               

               
Cow position:
               
chr29:4002982-4002759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 29
               

               
Conread position:
               
10-265
               

               
Cow position:
               
chr29:31943958-31943691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 30
               

               
Conread position:
               
10-270
               

               
Cow position:
               
chr29:34359731-34359979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
173, 29
               

               
Conread position:
               
10-281
               

               
Cow position:
               
chr29:4334808-4334539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
10-289
               

               
Cow position:
               
chr29:28979412-28979676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
193, 29
               

               
Conread position:
               
10-298
               

               
Cow position:
               
chr29:36210230-36209959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
103, 29
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr29:6286071-6286369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
128, 33
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr29:34773646-34773939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
122, 26
               

               
Conread position:
               
10-304
               

               
Cow position:
               
chr29:36530957-36530652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 17
               

               
Conread position:
               
11-173
               

               
Cow position:
               
chr29:742560-742716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
11-256
               

               
Cow position:
               
chr29:27826609-27826363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 28
               

               
Conread position:
               
11-285
               

               
Cow position:
               
chr29:23243789-23244073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
11-302
               

               
Cow position:
               
chr29:42363926-42364226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 28
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr29:11915909-11915605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
34, 105
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr29:17607505-17607205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 12
               

               
Conread position:
               
11-304
               

               
Cow position:
               
chr29:28446167-28446471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 28
               

               
Conread position:
               
11-312
               

               
Cow position:
               
chr29:10818361-10818654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
189, 28
               

               
Conread position:
               
11-316
               

               
Cow position:
               
chr29:25092195-25091885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
77, 25
               

               
Conread position:
               
12-296
               

               
Cow position:
               
chr29:43008996-43009288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
120, 21
               

               
Conread position:
               
12-300
               

               
Cow position:
               
chr29:22778086-22778389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
113, 8
               

               
Conread position:
               
13-172
               

               
Cow position:
               
chr29:20770431-20770270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
113, 26
               

               
Conread position:
               
13-231
               

               
Cow position:
               
chr29:27329980-27329754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
13-257
               

               
Cow position:
               
chr29:10058449-10058700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
13-302
               

               
Cow position:
               
chr29:2984977-2984675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
13-303
               

               
Cow position:
               
chr29:19339088-19338769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
60, 26
               

               
Conread position:
               
13-303
               

               
Cow position:
               
chr29:28166135-28166428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
13-303
               

               
Cow position:
               
chr29:35501567-35501859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr29:1557018-1556721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr29:4480086-4480387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
116, 26
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr29:24578950-24578668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
121, 26
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr29:39567769-39567476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
13-304
               

               
Cow position:
               
chr29:40117658-40117357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
14-140
               

               
Cow position:
               
chr29:14444959-14445083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
14-304
               

               
Cow position:
               
chr29:20903204-20903499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
115, 25
               

               
Conread position:
               
15-265
               

               
Cow position:
               
chr29:24252320-24252066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
114, 23
               

               
Conread position:
               
15-270
               

               
Cow position:
               
chr29:43099660-43099918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 30
               

               
Conread position:
               
15-294
               

               
Cow position:
               
chr29:39329518-39329798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
186, 24
               

               
Conread position:
               
15-298
               

               
Cow position:
               
chr29:22175766-22175485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
15-303
               

               
Cow position:
               
chr29:9912261-9911967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr29:11562698-11562403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
123, 22
               

               
Conread position:
               
15-304
               

               
Cow position:
               
chr29:26653959-26654252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
77, 24
               

               
Conread position:
               
15-305
               

               
Cow position:
               
chr29:16609833-16609526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
17-304
               

               
Cow position:
               
chr29:40337449-40337735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
15, 108
               

               
Conread position:
               
18-301
               

               
Cow position:
               
chr29:5892927-5892638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
111, 20
               

               
Conread position:
               
22-304
               

               
Cow position:
               
chr29:40853006-40852721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
109, 17
               

               
Conread position:
               
24-304
               

               
Cow position:
               
chr29:40166327-40166031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
13, 165
               

               
Conread position:
               
25-304
               

               
Cow position:
               
chr29:463573-463865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
25-304
               

               
Cow position:
               
chr29:19428738-19428452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
26-304
               

               
Cow position:
               
chr29:32521951-32521657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 35
               

               
Conread position:
               
26-304
               

               
Cow position:
               
chr29:40097043-40096745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
29-302
               

               
Cow position:
               
chr29:26771515-26771231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 253
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr29:9139494-9139197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr29:11366312-11366035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 148
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr29:16657772-16657474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
72, 275
               

               
Conread position:
               
33-295
               

               
Cow position:
               
chr29:1022367-1022087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
33-304
               

               
Cow position:
               
chr29:26263907-26263640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
87, 136
               

               
Conread position:
               
34-220
               

               
Cow position:
               
chr29:32176750-32176557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
34-292
               

               
Cow position:
               
chr29:9718702-9718972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
94, 41
               

               
Conread position:
               
34-304
               

               
Cow position:
               
chr29:24952760-24952473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
36-168
               

               
Cow position:
               
chr29:38980005-38980140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
36-296
               

               
Cow position:
               
chr29:22613498-22613224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
96, 248
               

               
Conread position:
               
36-301
               

               
Cow position:
               
chr29:709065-709331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
158, 78
               

               
Conread position:
               
36-302
               

               
Cow position:
               
chr29:44682036-44682300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
82, 102
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr29:868843-868561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr29:1229675-1229397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
93, 80
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr29:7955922-7956195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr29:18085640-18085379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
93, 149
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr29:26672843-26673117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
158, 108
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr29:28195453-28195728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
93, 42
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr29:38581047-38580764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
36-304
               

               
Cow position:
               
chr29:41811522-41811789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
37-159
               

               
Cow position:
               
chr29:31477046-31477177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
37-293
               

               
Cow position:
               
chr29:29057242-29056980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
92, 40
               

               
Conread position:
               
37-301
               

               
Cow position:
               
chr29:30441004-30440717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
37-302
               

               
Cow position:
               
chr29:1933504-1933766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
166, 92
               

               
Conread position:
               
37-303
               

               
Cow position:
               
chr29:31489386-31489109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:356388-356115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
88, 155
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:6293411-6293679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 221
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:6337731-6337451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
10, 220
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:9638253-9638523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 205
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:13639299-13639578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 131
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:17409402-17409118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:24604069-24604362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:28868710-28868421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
37, 150
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:34744558-34744828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:35292160-35291888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 236
               

               
Conread position:
               
37-304
               

               
Cow position:
               
chr29:41530917-41530638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
38-248
               

               
Cow position:
               
chr29:29314586-29314810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
38-304
               

               
Cow position:
               
chr29:2071505-2071780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
38-304
               

               
Cow position:
               
chr29:18735573-18735854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 43
               

               
Conread position:
               
38-304
               

               
Cow position:
               
chr29:22714657-22714939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
94, 60
               

               
Conread position:
               
39-304
               

               
Cow position:
               
chr29:24103476-24103760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
40-301
               

               
Cow position:
               
chr29:5947741-5947995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
40-302
               

               
Cow position:
               
chr29:29975102-29974832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
105, 87
               

               
Conread position:
               
40-304
               

               
Cow position:
               
chr29:4367790-4367509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
41-299
               

               
Cow position:
               
chr29:14034262-14034533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
90, 123
               

               
Conread position:
               
41-300
               

               
Cow position:
               
chr29:9938016-9938277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
72, 162
               

               
Conread position:
               
41-304
               

               
Cow position:
               
chr29:7407840-7408100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
41-304
               

               
Cow position:
               
chr29:18073003-18072718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
30, 128
               

               
Conread position:
               
41-304
               

               
Cow position:
               
chr29:18695316-18695046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
42-252
               

               
Cow position:
               
chr29:31674695-31674471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
86, 144
               

               
Conread position:
               
42-292
               

               
Cow position:
               
chr29:3100205-3100461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
159, 87
               

               
Conread position:
               
42-294
               

               
Cow position:
               
chr29:20626629-20626375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
161, 87
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr29:86949-87233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr29:2744205-2744483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr29:4624937-4625204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
80, 28
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr29:5098704-5098973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
119, 82
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr29:14501655-14501379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
79, 151
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr29:20673748-20674016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
161, 87
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr29:21443276-21443555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
87, 163
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr29:23844900-23844620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
80, 127
               

               
Conread position:
               
42-304
               

               
Cow position:
               
chr29:25088805-25088542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
103, 33
               

               
Conread position:
               
42-305
               

               
Cow position:
               
chr29:19253767-19254035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
150, 91
               

               
Conread position:
               
42-329
               

               
Cow position:
               
chr29:35677481-35677781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 217
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr29:17050-17316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
86, 18
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr29:465337-465613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr29:19389540-19389275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr29:26130835-26130572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
5, 87
               

               
Conread position:
               
43-304
               

               
Cow position:
               
chr29:34745596-34745866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
5, 61
               

               
Conread position:
               
45-270
               

               
Cow position:
               
chr29:27588982-27588743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
84, 62
               

               
Conread position:
               
45-298
               

               
Cow position:
               
chr29:12783904-12784160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
45-301
               

               
Cow position:
               
chr29:23698037-23697770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
45-302
               

               
Cow position:
               
chr29:40891642-40891911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
94, 34
               

               
Conread position:
               
45-304
               

               
Cow position:
               
chr29:40298961-40299224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
138, 97
               

               
Conread position:
               
45-304
               

               
Cow position:
               
chr29:43328703-43328427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
46-299
               

               
Cow position:
               
chr29:26270125-26269862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
46-300
               

               
Cow position:
               
chr29:34297510-34297772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
46-304
               

               
Cow position:
               
chr29:3704140-3704415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
76, 134
               

               
Conread position:
               
46-304
               

               
Cow position:
               
chr29:13372722-13372452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 103
               

               
Conread position:
               
47-260
               

               
Cow position:
               
chr29:10018636-10018407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
47-303
               

               
Cow position:
               
chr29:16195897-16195642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
77, 36
               

               
Conread position:
               
47-304
               

               
Cow position:
               
chr29:15738283-15738556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
47-304
               

               
Cow position:
               
chr29:17131562-17131819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 129
               

               
Conread position:
               
47-306
               

               
Cow position:
               
chr29:10456508-10456766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
84, 29
               

               
Conread position:
               
52-304
               

               
Cow position:
               
chr29:44378362-44378630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
73, 117
               

               
Conread position:
               
54-304
               

               
Cow position:
               
chr29:19792226-19792492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
90, 75
               

               
Conread position:
               
56-304
               

               
Cow position:
               
chr29:10838999-10838739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
56-304
               

               
Cow position:
               
chr29:31926241-31926501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 248
               

               
Conread position:
               
59-257
               

               
Cow position:
               
chr29:1124700-1124491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
60-304
               

               
Cow position:
               
chr29:42849269-42849016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
64, 53
               

               
Conread position:
               
64-239
               

               
Cow position:
               
chr29:31594087-31594276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
64-304
               

               
Cow position:
               
chr29:6774957-6775196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
68-304
               

               
Cow position:
               
chr29:26330242-26330002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
66, 99
               

               
Conread position:
               
69-304
               

               
Cow position:
               
chr29:9685971-9686212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
72-304
               

               
Cow position:
               
chr29:2623447-2623691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
78-304
               

               
Cow position:
               
chr29:2533085-2532850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
55, 119
               

               
Conread position:
               
79-304
               

               
Cow position:
               
chr29:4328443-4328222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 106
               

               
Conread position:
               
86-304
               

               
Cow position:
               
chr29:3503060-3502846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
121, 27
               

               
Conread position:
               
89-304
               

               
Cow position:
               
chr29:94542-94760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
34, 91
               

               
Conread position:
               
95-300
               

               
Cow position:
               
chr29:6472318-6472108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
96, 41
               

               
Conread position:
               
97-302
               

               
Cow position:
               
chr29:7040841-7041047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 82
               

               
Conread position:
               
97-305
               

               
Cow position:
               
chr29:26735036-26734821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
32, 166
               

               
Conread position:
               
101-304
               

               
Cow position:
               
chr29:21000636-21000430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
78, 33
               

               
Conread position:
               
107-304
               

               
Cow position:
               
chr29:8125591-8125806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
116-304
               

               
Cow position:
               
chr29:45650360-45650555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
118-304
               

               
Cow position:
               
chr29:37960998-37961189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
129-304
               

               
Cow position:
               
chr29:3396075-3395899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 13
               

               
Conread position:
               
131-304
               

               
Cow position:
               
chr29:13554103-13553921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
137-304
               

               
Cow position:
               
chr29:17339342-17339508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
57, 68
               

               
Conread position:
               
143-304
               

               
Cow position:
               
chr29:4066042-4065876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 163
               

               
Conread position:
               
183-304
               

               
Cow position:
               
chr29:40902804-40902931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
202-289
               

               
Cow position:
               
chr29:34430376-34430289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
205-304
               

               
Cow position:
               
chr29:21665858-21665759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
207-304
               

               
Cow position:
               
chr29:45588587-45588684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
82
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.