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Cow genome map

           
Conread name:
           
Ss1.1-Tra1-TCH01A080060.5
        

               
Conread position:
               
224-518
               

               
Cow position:
               
chrX:12033416-12033724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 259
               

               
Conread position:
               
234-518
               

               
Cow position:
               
chrX:11406179-11405888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
235-432
               

               
Cow position:
               
chrX:26437234-26437031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
12, 158
               

               
Conread position:
               
236-519
               

               
Cow position:
               
chrX:23522004-23522299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
17, 13
               

               
Conread position:
               
249-513
               

               
Cow position:
               
chrX:67433-67149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
251-426
               

               
Cow position:
               
chrX:37955380-37955201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
52, 165
               

               
Conread position:
               
251-518
               

               
Cow position:
               
chrX:34009226-34008946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
251-548
               

               
Cow position:
               
chrX:37105654-37105365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 178
               

               
Conread position:
               
253-396
               

               
Cow position:
               
chrX:33884624-33884477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
253-518
               

               
Cow position:
               
chrX:41733719-41733995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 19
               

               
Conread position:
               
254-598
               

               
Cow position:
               
chrX:26787628-26787271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
255-599
               

               
Cow position:
               
chrX:21582917-21582547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
51, 135
               

               
Conread position:
               
256-408
               

               
Cow position:
               
chrX:3145476-3145319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 16
               

               
Conread position:
               
256-467
               

               
Cow position:
               
chrX:22963338-22963566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
256-518
               

               
Cow position:
               
chrX:20131417-20131682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 54
               

               
Conread position:
               
256-519
               

               
Cow position:
               
chrX:13800351-13800625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
256-575
               

               
Cow position:
               
chrX:28080262-28079934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
50, 10
               

               
Conread position:
               
256-602
               

               
Cow position:
               
chrX:303963-303607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
256-602
               

               
Cow position:
               
chrX:388979-388626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
257-429
               

               
Cow position:
               
chrX:41886301-41886123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
257-440
               

               
Cow position:
               
chrX:22493480-22493291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
257-441
               

               
Cow position:
               
chrX:3154813-3154996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
88, 125
               

               
Conread position:
               
257-476
               

               
Cow position:
               
chrX:2878272-2878497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 112
               

               
Conread position:
               
257-476
               

               
Cow position:
               
chrX:26844978-26844744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
257-481
               

               
Cow position:
               
chrX:7695253-7695016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
257-513
               

               
Cow position:
               
chrX:1342797-1343065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 8
               

               
Conread position:
               
257-517
               

               
Cow position:
               
chrX:13524129-13524399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
257-518
               

               
Cow position:
               
chrX:20362677-20362946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 143
               

               
Conread position:
               
257-519
               

               
Cow position:
               
chrX:15306400-15306678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 203
               

               
Conread position:
               
257-519
               

               
Cow position:
               
chrX:24413503-24413224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
257-519
               

               
Cow position:
               
chrX:40827271-40827545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
257-597
               

               
Cow position:
               
chrX:17609986-17610349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 343
               

               
Conread position:
               
257-599
               

               
Cow position:
               
chrX:11145864-11146229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 110
               

               
Conread position:
               
257-599
               

               
Cow position:
               
chrX:22612858-22612507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 154
               

               
Conread position:
               
257-600
               

               
Cow position:
               
chrX:12640833-12640474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 128
               

               
Conread position:
               
257-605
               

               
Cow position:
               
chrX:12102492-12102864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 252
               

               
Conread position:
               
257-610
               

               
Cow position:
               
chrX:24292206-24292570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 202
               

               
Conread position:
               
257-626
               

               
Cow position:
               
chrX:3121423-3121821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
50, 101
               

               
Conread position:
               
257-626
               

               
Cow position:
               
chrX:25738524-25738124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
45, 167
               

               
Conread position:
               
257-629
               

               
Cow position:
               
chrX:22330096-22330491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 49
               

               
Conread position:
               
258-377
               

               
Cow position:
               
chrX:40591158-40591033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-392
               

               
Cow position:
               
chrX:14030490-14030350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-392
               

               
Cow position:
               
chrX:19775008-19775148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-405
               

               
Cow position:
               
chrX:2463224-2463378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
258-405
               

               
Cow position:
               
chrX:4630227-4630380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-408
               

               
Cow position:
               
chrX:17631361-17631517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-409
               

               
Cow position:
               
chrX:18078439-18078595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 151
               

               
Conread position:
               
258-413
               

               
Cow position:
               
chrX:38072295-38072455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 151
               

               
Conread position:
               
258-414
               

               
Cow position:
               
chrX:28559362-28559523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
258-414
               

               
Cow position:
               
chrX:30965573-30965412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
258-416
               

               
Cow position:
               
chrX:32071209-32071373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-428
               

               
Cow position:
               
chrX:28518249-28518424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chrX:9953587-9953412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 128
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chrX:10465257-10465080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chrX:13971767-13971944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chrX:15173052-15173229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chrX:18462503-18462680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chrX:26506469-26506646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chrX:28752868-28753045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chrX:38051960-38052137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-429
               

               
Cow position:
               
chrX:40224773-40224947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 99
               

               
Conread position:
               
258-431
               

               
Cow position:
               
chrX:29064885-29064711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 88
               

               
Conread position:
               
258-434
               

               
Cow position:
               
chrX:25361034-25360855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 153
               

               
Conread position:
               
258-437
               

               
Cow position:
               
chrX:33538399-33538216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 120
               

               
Conread position:
               
258-438
               

               
Cow position:
               
chrX:10146195-10146381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-440
               

               
Cow position:
               
chrX:2500159-2500347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
258-440
               

               
Cow position:
               
chrX:4633384-4633570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 166
               

               
Conread position:
               
258-440
               

               
Cow position:
               
chrX:6279134-6279320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
258-440
               

               
Cow position:
               
chrX:12996383-12996571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-440
               

               
Cow position:
               
chrX:19211062-19211248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
48, 166
               

               
Conread position:
               
258-440
               

               
Cow position:
               
chrX:28133586-28133396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
258-440
               

               
Cow position:
               
chrX:35283749-35283566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
258-440
               

               
Cow position:
               
chrX:45464918-45464732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
69, 48
               

               
Conread position:
               
258-449
               

               
Cow position:
               
chrX:39560180-39560380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-453
               

               
Cow position:
               
chrX:11674528-11674329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 131
               

               
Conread position:
               
258-454
               

               
Cow position:
               
chrX:5375830-5375632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
258-474
               

               
Cow position:
               
chrX:12290209-12289994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
258-513
               

               
Cow position:
               
chrX:2185711-2185448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-513
               

               
Cow position:
               
chrX:11083138-11083406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
258-514
               

               
Cow position:
               
chrX:10932145-10931872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chrX:24923322-24923053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-517
               

               
Cow position:
               
chrX:30228642-30228917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-518
               

               
Cow position:
               
chrX:2300352-2300077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
48, 241
               

               
Conread position:
               
258-518
               

               
Cow position:
               
chrX:2382939-2382663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-518
               

               
Cow position:
               
chrX:20974527-20974253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
10, 132
               

               
Conread position:
               
258-518
               

               
Cow position:
               
chrX:29942622-29942351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-518
               

               
Cow position:
               
chrX:36250391-36250664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
5, 92
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:323387-323108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:2274389-2274114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:2932248-2932526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:3464604-3464883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:4177291-4177016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:7178135-7177865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:8103831-8104087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:9169142-9169420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:13405825-13406092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
87, 52
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:14598318-14598040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:14781874-14782151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:16086651-16086929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:16688740-16688462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:18451607-18451885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:23038525-23038791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:23280479-23280218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
47, 188
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:23451973-23452251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:24173693-24173967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 186
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:24441767-24442045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
18, 22
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:24735416-24735146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 154
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:26531431-26531167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
88, 48
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:27754901-27754622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:27997123-27996845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:28706574-28706296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:29849160-29849435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:29912811-29912533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:30139312-30139590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:30143812-30144090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:30421676-30421948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 128
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:30825120-30824842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:32584460-32584737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:34441971-34442248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:34719985-34719707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:37816062-37815785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:38852631-38852355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:40560073-40560347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 123
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:41156783-41156505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-519
               

               
Cow position:
               
chrX:41847062-41847336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 120
               

               
Conread position:
               
258-520
               

               
Cow position:
               
chrX:27318703-27318424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-533
               

               
Cow position:
               
chrX:15114143-15113853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
258-533
               

               
Cow position:
               
chrX:29841697-29841986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
50, 237
               

               
Conread position:
               
258-539
               

               
Cow position:
               
chrX:6493204-6492909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
258-545
               

               
Cow position:
               
chrX:40268948-40268658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
49, 259
               

               
Conread position:
               
258-566
               

               
Cow position:
               
chrX:37489198-37488865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
258-579
               

               
Cow position:
               
chrX:19657969-19657622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 340
               

               
Conread position:
               
258-592
               

               
Cow position:
               
chrX:40580691-40581052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-593
               

               
Cow position:
               
chrX:17158356-17158704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
156, 48
               

               
Conread position:
               
258-593
               

               
Cow position:
               
chrX:18244454-18244095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
51, 337
               

               
Conread position:
               
258-596
               

               
Cow position:
               
chrX:16465772-16465408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
49, 339
               

               
Conread position:
               
258-596
               

               
Cow position:
               
chrX:25459166-25459532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
15, 159
               

               
Conread position:
               
258-597
               

               
Cow position:
               
chrX:2324178-2323813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
258-597
               

               
Cow position:
               
chrX:31496208-31495843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-597
               

               
Cow position:
               
chrX:39548871-39548505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:1947487-1947843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:2486158-2486527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
45, 350
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:4996087-4995715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 343
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:10866394-10866767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 302
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:18455310-18455665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:22888130-22887767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:27590562-27590925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:28157007-28156637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
51, 241
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:39556323-39556691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
258-598
               

               
Cow position:
               
chrX:39558893-39559253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:671531-671889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 180
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:2048584-2048216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 342
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:2103877-2103509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 342
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:2293128-2293496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:2813010-2813378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 342
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:3211073-3211432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 329
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:4905518-4905883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
48, 337
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:5646632-5647000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:6372653-6372284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 341
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:7096930-7096563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 299
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:7551331-7551697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:7755373-7755010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 94
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:7805848-7805485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
48, 42
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:8434732-8435098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
49, 236
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:9011799-9011435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
52, 337
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:10444943-10445311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:11408862-11409230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:11950021-11950381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
54, 128
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:11975974-11976342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:16040209-16040575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:16046619-16046251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:16782752-16782384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
48, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:17055041-17054672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
48, 343
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:17782971-17782604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 102
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:18194162-18193794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 158
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:18898178-18898545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
48, 19
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:18950265-18950632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:20801245-20800893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:21226946-21226581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 337
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:21255248-21254883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
48, 296
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:21686091-21685723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 342
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:21833341-21832988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 248
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:23341521-23341887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:23986721-23986354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:24482897-24483259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 188
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:24769388-24769752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:26760096-26760464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 335
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:28313897-28313529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:29722687-29722338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:29760159-29759792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 339
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:29907730-29908098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 342
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:30172236-30172602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:30196769-30196402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 222
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:31372935-31372566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
20, 339
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:31728935-31728572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 335
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:31978369-31978737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:32643958-32643590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:34519198-34518830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:34761538-34761170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:35533323-35532959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:36479163-36479531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:36729856-36729488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:38151161-38150792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
18, 341
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:38230795-38231163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
48, 342
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:38330854-38330488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:39714023-39713655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:42733338-42732976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
258-599
               

               
Cow position:
               
chrX:45236938-45236570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-600
               

               
Cow position:
               
chrX:5639465-5639820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 321
               

               
Conread position:
               
258-600
               

               
Cow position:
               
chrX:6044017-6044357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
47, 147
               

               
Conread position:
               
258-600
               

               
Cow position:
               
chrX:13912568-13912196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 142
               

               
Conread position:
               
258-600
               

               
Cow position:
               
chrX:20652880-20652516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 76
               

               
Conread position:
               
258-602
               

               
Cow position:
               
chrX:44054275-44053918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 77
               

               
Conread position:
               
258-603
               

               
Cow position:
               
chrX:6766273-6766634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 85
               

               
Conread position:
               
258-605
               

               
Cow position:
               
chrX:34222223-34221860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 152
               

               
Conread position:
               
258-607
               

               
Cow position:
               
chrX:3361293-3360917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
49, 340
               

               
Conread position:
               
258-607
               

               
Cow position:
               
chrX:15621060-15621435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
49, 153
               

               
Conread position:
               
258-607
               

               
Cow position:
               
chrX:17663446-17663820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
15, 226
               

               
Conread position:
               
258-607
               

               
Cow position:
               
chrX:21592759-21592388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 78
               

               
Conread position:
               
258-607
               

               
Cow position:
               
chrX:22811361-22810986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
48, 105
               

               
Conread position:
               
258-607
               

               
Cow position:
               
chrX:27705065-27704695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
86, 335
               

               
Conread position:
               
258-607
               

               
Cow position:
               
chrX:42222316-42222677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
49, 132
               

               
Conread position:
               
258-611
               

               
Cow position:
               
chrX:20504118-20503733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 343
               

               
Conread position:
               
258-611
               

               
Cow position:
               
chrX:21343866-21343487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
49, 110
               

               
Conread position:
               
258-611
               

               
Cow position:
               
chrX:22125395-22125763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 148
               

               
Conread position:
               
258-623
               

               
Cow position:
               
chrX:37832000-37832389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 228
               

               
Conread position:
               
258-626
               

               
Cow position:
               
chrX:35028713-35028328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
48, 348
               

               
Conread position:
               
259-400
               

               
Cow position:
               
chrX:9018832-9018979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-403
               

               
Cow position:
               
chrX:18024511-18024361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-414
               

               
Cow position:
               
chrX:5408526-5408366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
259-426
               

               
Cow position:
               
chrX:26230045-26230215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 131
               

               
Conread position:
               
259-428
               

               
Cow position:
               
chrX:12001676-12001851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-429
               

               
Cow position:
               
chrX:1576792-1576968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-429
               

               
Cow position:
               
chrX:7119173-7119349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-429
               

               
Cow position:
               
chrX:10923100-10923276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-429
               

               
Cow position:
               
chrX:12458168-12457993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-429
               

               
Cow position:
               
chrX:16285682-16285506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
259-429
               

               
Cow position:
               
chrX:26617450-26617626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-429
               

               
Cow position:
               
chrX:32331102-32330926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-429
               

               
Cow position:
               
chrX:38014565-38014389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-431
               

               
Cow position:
               
chrX:42120774-42120596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-436
               

               
Cow position:
               
chrX:30822055-30821872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-440
               

               
Cow position:
               
chrX:11358594-11358781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-449
               

               
Cow position:
               
chrX:22521750-22521949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-449
               

               
Cow position:
               
chrX:36535264-36535463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 150
               

               
Conread position:
               
259-467
               

               
Cow position:
               
chrX:17291401-17291189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
48, 108
               

               
Conread position:
               
259-487
               

               
Cow position:
               
chrX:24320801-24321040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-517
               

               
Cow position:
               
chrX:19880465-19880196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
259-518
               

               
Cow position:
               
chrX:15346498-15346774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-518
               

               
Cow position:
               
chrX:17265576-17265840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 70
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:361982-362259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:5892699-5892422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:12145573-12145296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:14162663-14162386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:16853919-16854192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
47, 108
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:21768275-21767998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:24509338-24509061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:29169870-29170148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:30688536-30688273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 146
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:30816798-30817075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:32419636-32419377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
86, 45
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:33763815-33763538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:34253700-34253423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-519
               

               
Cow position:
               
chrX:45903648-45903371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-533
               

               
Cow position:
               
chrX:30159524-30159809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
48, 185
               

               
Conread position:
               
259-593
               

               
Cow position:
               
chrX:5406531-5406171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 339
               

               
Conread position:
               
259-598
               

               
Cow position:
               
chrX:14458696-14459063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-598
               

               
Cow position:
               
chrX:15140077-15140431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 92
               

               
Conread position:
               
259-598
               

               
Cow position:
               
chrX:27095590-27095234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 329
               

               
Conread position:
               
259-598
               

               
Cow position:
               
chrX:37403765-37404129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:2160236-2159869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:2579890-2579523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:3417666-3418032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 225
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:5123888-5124255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
47, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:5320248-5320612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 66
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:5334348-5334711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 337
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:5392104-5392471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:6454167-6453801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:6581405-6581039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 236
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:8641259-8640892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
48, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:9128527-9128159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 342
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:9641961-9642328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
48, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:10528303-10528682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 350
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:11566385-11566018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:12360359-12359992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:13030740-13031107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
48, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:14049723-14050090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:18488243-18488610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:18656334-18656701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
48, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:19109570-19109937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:19399249-19398882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:19473689-19474044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:22076871-22077238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:22564216-22564578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
48, 149
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:25289208-25289575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:26275609-26275243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 312
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:27305400-27305033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 339
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:27422810-27423178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 155
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:27759178-27758813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 272
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:28503807-28503440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:28588442-28588074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:29225949-29225582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:30052998-30053364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:30199521-30199888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:30836844-30836491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
48, 145
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:36195563-36195200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
48, 335
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:37080048-37080414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 232
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:37852610-37852240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 342
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:38961375-38961746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 345
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:39185644-39185277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
48, 341
               

               
Conread position:
               
259-599
               

               
Cow position:
               
chrX:39730668-39731033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 278
               

               
Conread position:
               
259-600
               

               
Cow position:
               
chrX:15091298-15091661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
48, 234
               

               
Conread position:
               
259-607
               

               
Cow position:
               
chrX:3081660-3082034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
48, 338
               

               
Conread position:
               
259-607
               

               
Cow position:
               
chrX:11855640-11855261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 343
               

               
Conread position:
               
259-619
               

               
Cow position:
               
chrX:2247886-2248267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 248
               

               
Conread position:
               
259-626
               

               
Cow position:
               
chrX:25015009-25015394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
12, 27
               

               
Conread position:
               
259-661
               

               
Cow position:
               
chrX:27594709-27595116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
48, 152
               

               
Conread position:
               
260-429
               

               
Cow position:
               
chrX:2701367-2701538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 119
               

               
Conread position:
               
260-484
               

               
Cow position:
               
chrX:1793698-1793936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
260-490
               

               
Cow position:
               
chrX:2366135-2365887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 100
               

               
Conread position:
               
260-533
               

               
Cow position:
               
chrX:2764034-2763753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 100
               

               
Conread position:
               
260-600
               

               
Cow position:
               
chrX:23218532-23218177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
260-626
               

               
Cow position:
               
chrX:4299506-4299877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 138
               

               
Conread position:
               
262-400
               

               
Cow position:
               
chrX:32039374-32039518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
262-403
               

               
Cow position:
               
chrX:4869027-4868878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
262-429
               

               
Cow position:
               
chrX:5306069-5305896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
262-429
               

               
Cow position:
               
chrX:15439169-15439339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 81
               

               
Conread position:
               
262-431
               

               
Cow position:
               
chrX:11819832-11819660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 128
               

               
Conread position:
               
262-519
               

               
Cow position:
               
chrX:20742455-20742186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
45, 105
               

               
Conread position:
               
262-519
               

               
Cow position:
               
chrX:20878294-20878573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
262-519
               

               
Cow position:
               
chrX:40545154-40545428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
262-519
               

               
Cow position:
               
chrX:41879462-41879722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
44, 189
               

               
Conread position:
               
262-593
               

               
Cow position:
               
chrX:23022781-23022424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
41, 336
               

               
Conread position:
               
262-598
               

               
Cow position:
               
chrX:29876593-29876953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
262-599
               

               
Cow position:
               
chrX:4622486-4622849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
262-599
               

               
Cow position:
               
chrX:5331969-5332329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 334
               

               
Conread position:
               
262-599
               

               
Cow position:
               
chrX:6870095-6870460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
45, 337
               

               
Conread position:
               
262-599
               

               
Cow position:
               
chrX:16359541-16359903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 149
               

               
Conread position:
               
262-599
               

               
Cow position:
               
chrX:17994927-17994563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 338
               

               
Conread position:
               
262-599
               

               
Cow position:
               
chrX:30060356-30059991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 343
               

               
Conread position:
               
262-599
               

               
Cow position:
               
chrX:46297128-46296766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
45, 222
               

               
Conread position:
               
263-598
               

               
Cow position:
               
chrX:14462776-14462420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
265-513
               

               
Cow position:
               
chrX:42540064-42539804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
265-518
               

               
Cow position:
               
chrX:37781612-37781873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 79
               

               
Conread position:
               
265-519
               

               
Cow position:
               
chrX:28633011-28633272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
266-468
               

               
Cow position:
               
chrX:1002452-1002251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
80, 36
               

               
Conread position:
               
266-518
               

               
Cow position:
               
chrX:34078514-34078242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
39, 241
               

               
Conread position:
               
266-518
               

               
Cow position:
               
chrX:37681848-37682115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
266-519
               

               
Cow position:
               
chrX:3405889-3406148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 170
               

               
Conread position:
               
266-519
               

               
Cow position:
               
chrX:24888674-24888939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 200
               

               
Conread position:
               
266-519
               

               
Cow position:
               
chrX:40707932-40707667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 243
               

               
Conread position:
               
266-519
               

               
Cow position:
               
chrX:41106546-41106808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
40, 101
               

               
Conread position:
               
266-533
               

               
Cow position:
               
chrX:22600951-22601229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
41, 225
               

               
Conread position:
               
266-533
               

               
Cow position:
               
chrX:27098553-27098816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 27
               

               
Conread position:
               
266-550
               

               
Cow position:
               
chrX:19929896-19929601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
266-597
               

               
Cow position:
               
chrX:18247813-18247463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
266-599
               

               
Cow position:
               
chrX:1055927-1056283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
40, 328
               

               
Conread position:
               
266-600
               

               
Cow position:
               
chrX:6088931-6089269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
40, 123
               

               
Conread position:
               
266-605
               

               
Cow position:
               
chrX:24006370-24006732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
266-605
               

               
Cow position:
               
chrX:42380378-42380743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 318
               

               
Conread position:
               
266-610
               

               
Cow position:
               
chrX:25282029-25282401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
267-395
               

               
Cow position:
               
chrX:29055382-29055248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
267-417
               

               
Cow position:
               
chrX:19636356-19636200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
267-426
               

               
Cow position:
               
chrX:30429895-30430060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
267-427
               

               
Cow position:
               
chrX:16478378-16478212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
267-428
               

               
Cow position:
               
chrX:6202970-6202803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
267-440
               

               
Cow position:
               
chrX:16035048-16035229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
267-440
               

               
Cow position:
               
chrX:22409257-22409443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
267-443
               

               
Cow position:
               
chrX:7486327-7486145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
267-443
               

               
Cow position:
               
chrX:34866369-34866550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 170
               

               
Conread position:
               
267-447
               

               
Cow position:
               
chrX:42466561-42466747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
267-449
               

               
Cow position:
               
chrX:3096292-3096481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
267-449
               

               
Cow position:
               
chrX:4420677-4420489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
40, 93
               

               
Conread position:
               
267-468
               

               
Cow position:
               
chrX:19228606-19228814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
267-496
               

               
Cow position:
               
chrX:32182573-32182807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 124
               

               
Conread position:
               
267-510
               

               
Cow position:
               
chrX:21666848-21667098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
39, 226
               

               
Conread position:
               
267-517
               

               
Cow position:
               
chrX:4482416-4482154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 240
               

               
Conread position:
               
267-518
               

               
Cow position:
               
chrX:9837581-9837323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
39, 171
               

               
Conread position:
               
267-518
               

               
Cow position:
               
chrX:21501081-21500824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
267-518
               

               
Cow position:
               
chrX:22871577-22871315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
39, 121
               

               
Conread position:
               
267-518
               

               
Cow position:
               
chrX:40279272-40279011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
267-519
               

               
Cow position:
               
chrX:26974373-26974104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
267-519
               

               
Cow position:
               
chrX:30163775-30164044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
267-566
               

               
Cow position:
               
chrX:13885433-13885125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
267-591
               

               
Cow position:
               
chrX:15151213-15151563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 330
               

               
Conread position:
               
267-593
               

               
Cow position:
               
chrX:165338-165007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
35, 135
               

               
Conread position:
               
267-593
               

               
Cow position:
               
chrX:27977368-27977726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
267-598
               

               
Cow position:
               
chrX:8530003-8529645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 331
               

               
Conread position:
               
267-598
               

               
Cow position:
               
chrX:36840166-36839808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
267-599
               

               
Cow position:
               
chrX:4343214-4342855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
40, 331
               

               
Conread position:
               
267-599
               

               
Cow position:
               
chrX:5280390-5280748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 144
               

               
Conread position:
               
267-599
               

               
Cow position:
               
chrX:5866609-5866250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 144
               

               
Conread position:
               
267-599
               

               
Cow position:
               
chrX:10301583-10301232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
267-599
               

               
Cow position:
               
chrX:14124783-14125140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 228
               

               
Conread position:
               
267-599
               

               
Cow position:
               
chrX:15260156-15260515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
40, 333
               

               
Conread position:
               
267-599
               

               
Cow position:
               
chrX:18222876-18222518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 330
               

               
Conread position:
               
267-599
               

               
Cow position:
               
chrX:24109144-24109500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
42, 143
               

               
Conread position:
               
267-599
               

               
Cow position:
               
chrX:44192977-44193336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
40, 331
               

               
Conread position:
               
267-600
               

               
Cow position:
               
chrX:4499094-4498738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
267-600
               

               
Cow position:
               
chrX:11744731-11744371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 332
               

               
Conread position:
               
267-600
               

               
Cow position:
               
chrX:24309652-24309997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
267-600
               

               
Cow position:
               
chrX:30089590-30089943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 143
               

               
Conread position:
               
267-605
               

               
Cow position:
               
chrX:2648898-2649251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 172
               

               
Conread position:
               
268-408
               

               
Cow position:
               
chrX:41701390-41701246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 99
               

               
Conread position:
               
268-429
               

               
Cow position:
               
chrX:20580089-20580255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
268-440
               

               
Cow position:
               
chrX:35388447-35388624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
268-449
               

               
Cow position:
               
chrX:5248847-5248657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
268-465
               

               
Cow position:
               
chrX:22812524-22812321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
268-500
               

               
Cow position:
               
chrX:6835799-6836040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
268-513
               

               
Cow position:
               
chrX:16279114-16278852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
268-518
               

               
Cow position:
               
chrX:17794292-17794046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 170
               

               
Conread position:
               
268-518
               

               
Cow position:
               
chrX:20998814-20999082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
268-519
               

               
Cow position:
               
chrX:30752237-30751970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
268-598
               

               
Cow position:
               
chrX:16020922-16021271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 326
               

               
Conread position:
               
268-599
               

               
Cow position:
               
chrX:865858-865500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
268-599
               

               
Cow position:
               
chrX:5289224-5289580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 297
               

               
Conread position:
               
268-599
               

               
Cow position:
               
chrX:7572843-7572495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
268-599
               

               
Cow position:
               
chrX:11073746-11074079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
39, 260
               

               
Conread position:
               
268-599
               

               
Cow position:
               
chrX:13928289-13928638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
39, 191
               

               
Conread position:
               
268-600
               

               
Cow position:
               
chrX:508693-509040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
268-611
               

               
Cow position:
               
chrX:40365281-40365653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
38, 332
               

               
Conread position:
               
269-519
               

               
Cow position:
               
chrX:20953993-20953727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
269-599
               

               
Cow position:
               
chrX:1550426-1550069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 329
               

               
Conread position:
               
269-599
               

               
Cow position:
               
chrX:2559499-2559856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
38, 331
               

               
Conread position:
               
269-599
               

               
Cow position:
               
chrX:20021039-20020683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
5, 140
               

               
Conread position:
               
269-599
               

               
Cow position:
               
chrX:23135039-23134693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 99
               

               
Conread position:
               
269-599
               

               
Cow position:
               
chrX:35240327-35239976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 190
               

               
Conread position:
               
270-518
               

               
Cow position:
               
chrX:25436471-25436711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
33, 154
               

               
Conread position:
               
270-599
               

               
Cow position:
               
chrX:38793809-38793467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 263
               

               
Conread position:
               
271-507
               

               
Cow position:
               
chrX:38999362-38999111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
272-585
               

               
Cow position:
               
chrX:20032373-20032713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 328
               

               
Conread position:
               
273-429
               

               
Cow position:
               
chrX:33669189-33669028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
273-484
               

               
Cow position:
               
chrX:10329265-10329053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 148
               

               
Conread position:
               
273-616
               

               
Cow position:
               
chrX:23268756-23269115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 27
               

               
Conread position:
               
274-561
               

               
Cow position:
               
chrX:37544435-37544130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
275-599
               

               
Cow position:
               
chrX:24588282-24588630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
7, 282
               

               
Conread position:
               
277-518
               

               
Cow position:
               
chrX:27629303-27629048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
277-593
               

               
Cow position:
               
chrX:9438959-9438618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 142
               

               
Conread position:
               
278-598
               

               
Cow position:
               
chrX:22102322-22102655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
25, 222
               

               
Conread position:
               
281-599
               

               
Cow position:
               
chrX:35937636-35937971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 68
               

               
Conread position:
               
282-600
               

               
Cow position:
               
chrX:10440386-10440723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
24, 306
               

               
Conread position:
               
282-617
               

               
Cow position:
               
chrX:43648863-43649194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
25, 109
               

               
Conread position:
               
285-598
               

               
Cow position:
               
chrX:43789395-43789716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 279
               

               
Conread position:
               
288-550
               

               
Cow position:
               
chrX:23587237-23586971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
8, 118
               

               
Conread position:
               
289-622
               

               
Cow position:
               
chrX:40516935-40516602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
291-465
               

               
Cow position:
               
chrX:26622202-26622380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
12, 161
               

               
Conread position:
               
295-518
               

               
Cow position:
               
chrX:13430365-13430594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
295-518
               

               
Cow position:
               
chrX:44019130-44018897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 91
               

               
Conread position:
               
297-593
               

               
Cow position:
               
chrX:35383377-35383672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
9, 114
               

               
Conread position:
               
300-600
               

               
Cow position:
               
chrX:27450634-27450946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
12, 133
               

               
Conread position:
               
304-486
               

               
Cow position:
               
chrX:7747927-7748116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 35
               

               
Conread position:
               
304-598
               

               
Cow position:
               
chrX:7277355-7277054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
42, 276
               

               
Conread position:
               
304-603
               

               
Cow position:
               
chrX:25204756-25204436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
41, 50
               

               
Conread position:
               
304-621
               

               
Cow position:
               
chrX:2790658-2790314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
304-626
               

               
Cow position:
               
chrX:23927764-23928097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
126, 146
               

               
Conread position:
               
306-449
               

               
Cow position:
               
chrX:12097714-12097567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
306-508
               

               
Cow position:
               
chrX:7444326-7444112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
306-518
               

               
Cow position:
               
chrX:16517713-16517937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
306-518
               

               
Cow position:
               
chrX:40788553-40788329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
306-519
               

               
Cow position:
               
chrX:6673795-6673573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
306-519
               

               
Cow position:
               
chrX:23572397-23572622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
306-571
               

               
Cow position:
               
chrX:3952271-3951993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 106
               

               
Conread position:
               
306-599
               

               
Cow position:
               
chrX:13206371-13206059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 286
               

               
Conread position:
               
306-599
               

               
Cow position:
               
chrX:23415276-23415591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 92
               

               
Conread position:
               
306-607
               

               
Cow position:
               
chrX:39292799-39293122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
40, 289
               

               
Conread position:
               
308-519
               

               
Cow position:
               
chrX:3596880-3596657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
309-542
               

               
Cow position:
               
chrX:10976437-10976200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
310-518
               

               
Cow position:
               
chrX:10412558-10412780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
310-520
               

               
Cow position:
               
chrX:12179094-12178872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
310-599
               

               
Cow position:
               
chrX:24205436-24205135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 172
               

               
Conread position:
               
310-600
               

               
Cow position:
               
chrX:30681089-30681401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
311-429
               

               
Cow position:
               
chrX:31604934-31605053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
311-517
               

               
Cow position:
               
chrX:19595339-19595124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
311-519
               

               
Cow position:
               
chrX:4750958-4751175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
311-519
               

               
Cow position:
               
chrX:6543679-6543456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
311-519
               

               
Cow position:
               
chrX:22819469-22819272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
311-519
               

               
Cow position:
               
chrX:38227897-38228122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
311-519
               

               
Cow position:
               
chrX:45113089-45112881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
311-524
               

               
Cow position:
               
chrX:2146506-2146290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
35, 155
               

               
Conread position:
               
311-551
               

               
Cow position:
               
chrX:13719418-13719168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
107, 144
               

               
Conread position:
               
311-568
               

               
Cow position:
               
chrX:18987852-18987598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 136
               

               
Conread position:
               
311-591
               

               
Cow position:
               
chrX:3649409-3649709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 283
               

               
Conread position:
               
311-598
               

               
Cow position:
               
chrX:15977539-15977848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
35, 284
               

               
Conread position:
               
311-599
               

               
Cow position:
               
chrX:2008296-2008594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 138
               

               
Conread position:
               
311-599
               

               
Cow position:
               
chrX:13031249-13031546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
311-599
               

               
Cow position:
               
chrX:19609090-19608779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
35, 285
               

               
Conread position:
               
311-599
               

               
Cow position:
               
chrX:23969765-23969458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
311-599
               

               
Cow position:
               
chrX:24280317-24280024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
34, 42
               

               
Conread position:
               
311-599
               

               
Cow position:
               
chrX:26508636-26508332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
34, 276
               

               
Conread position:
               
311-599
               

               
Cow position:
               
chrX:33803591-33803891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
311-600
               

               
Cow position:
               
chrX:23314399-23314708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
311-600
               

               
Cow position:
               
chrX:27385520-27385817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
35, 101
               

               
Conread position:
               
312-519
               

               
Cow position:
               
chrX:34238187-34237972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
312-600
               

               
Cow position:
               
chrX:30085895-30086199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
312-626
               

               
Cow position:
               
chrX:25848214-25847878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 167
               

               
Conread position:
               
313-599
               

               
Cow position:
               
chrX:10059877-10059569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
33, 280
               

               
Conread position:
               
313-599
               

               
Cow position:
               
chrX:19650097-19650394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
313-599
               

               
Cow position:
               
chrX:37118309-37118013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
314-599
               

               
Cow position:
               
chrX:29700543-29700839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
31, 7
               

               
Conread position:
               
316-519
               

               
Cow position:
               
chrX:35409044-35408830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 198
               

               
Conread position:
               
323-607
               

               
Cow position:
               
chrX:22538631-22538937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 270
               

               
Conread position:
               
325-508
               

               
Cow position:
               
chrX:37128295-37128107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
325-591
               

               
Cow position:
               
chrX:40070210-40070499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 269
               

               
Conread position:
               
325-620
               

               
Cow position:
               
chrX:24826404-24826090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
329-511
               

               
Cow position:
               
chrX:36376968-36376789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 77
               

               
Conread position:
               
331-592
               

               
Cow position:
               
chrX:33965291-33965552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
331-600
               

               
Cow position:
               
chrX:23032855-23032576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
336-554
               

               
Cow position:
               
chrX:40571539-40571763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 59
               

               
Conread position:
               
374-599
               

               
Cow position:
               
chrX:39903155-39903390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
408-597
               

               
Cow position:
               
chrX:31804193-31803996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 103
               

               
Conread position:
               
417-599
               

               
Cow position:
               
chrX:30354680-30354498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
418-600
               

               
Cow position:
               
chrX:21191149-21190964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
421-600
               

               
Cow position:
               
chrX:1527676-1527851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
427-624
               

               
Cow position:
               
chrX:8400275-8400472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 83
               

               
Conread position:
               
450-626
               

               
Cow position:
               
chrX:502451-502625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 34
               
Show alignments to all cow chromosomes.