Cow genome map

Conread name: Ss1.1-Tra1-TCH01C070097.5

Conread position: 3-565
Cow position:
Alignm length: 586
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 59

Conread position: 4-685
Cow position:
Alignm length: 703
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 58

Conread position: 19-347
Cow position:
Alignm length: 343
Alignm identity: 229
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 197

Conread position: 19-444
Cow position:
Alignm length: 452
Alignm identity: 300
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 22, 101

Conread position: 19-585
Cow position:
Alignm length: 597
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 211

Conread position: 19-685
Cow position:
Alignm length: 696
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 211

Conread position: 19-685
Cow position:
Alignm length: 694
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 98

Conread position: 19-685
Cow position:
Alignm length: 697
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 212

Conread position: 19-686
Cow position:
Alignm length: 699
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 90

Conread position: 20-403
Cow position:
Alignm length: 395
Alignm identity: 266
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 60, 49

Conread position: 20-685
Cow position:
Alignm length: 689
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 15

Conread position: 22-312
Cow position:
Alignm length: 298
Alignm identity: 200
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 29, 157

Conread position: 22-685
Cow position:
Alignm length: 698
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 212

Conread position: 22-686
Cow position:
Alignm length: 694
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 218

Conread position: 22-842
Cow position:
Alignm length: 865
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 126

Conread position: 23-315
Cow position:
Alignm length: 306
Alignm identity: 203
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 100

Conread position: 25-403
Cow position:
Alignm length: 400
Alignm identity: 265
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 49, 34

Conread position: 25-685
Cow position:
Alignm length: 688
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 10

Conread position: 27-685
Cow position:
Alignm length: 691
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 204

Conread position: 35-452
Cow position:
Alignm length: 432
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 192

Conread position: 36-728
Cow position:
Alignm length: 724
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 104

Conread position: 49-417
Cow position:
Alignm length: 382
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 120

Conread position: 49-671
Cow position:
Alignm length: 634
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 171

Conread position: 49-682
Cow position:
Alignm length: 655
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 20

Conread position: 49-772
Cow position:
Alignm length: 746
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 36

Conread position: 51-318
Cow position:
Alignm length: 278
Alignm identity: 198
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 21, 178

Conread position: 59-314
Cow position:
Alignm length: 274
Alignm identity: 198
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 14, 171

Conread position: 68-493
Cow position:
Alignm length: 444
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 158

Conread position: 69-530
Cow position:
Alignm length: 481
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 79

Conread position: 69-685
Cow position:
Alignm length: 641
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 67

Conread position: 70-272
Cow position:
Alignm length: 210
Alignm identity: 144
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 38, 156

Conread position: 72-267
Cow position:
Alignm length: 202
Alignm identity: 140
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 15, 135

Conread position: 72-372
Cow position:
Alignm length: 314
Alignm identity: 215
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 42, 12

Conread position: 72-384
Cow position:
Alignm length: 326
Alignm identity: 222
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 15, 153

Conread position: 72-412
Cow position:
Alignm length: 353
Alignm identity: 244
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 15, 153

Conread position: 72-530
Cow position:
Alignm length: 481
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 70

Conread position: 72-617
Cow position:
Alignm length: 568
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 152

Conread position: 72-623
Cow position:
Alignm length: 575
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position:
Alignm length: 636
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position:
Alignm length: 633
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 152

Conread position: 72-685
Cow position:
Alignm length: 637
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position:
Alignm length: 638
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position:
Alignm length: 630
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 48

Conread position: 72-685
Cow position:
Alignm length: 638
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position:
Alignm length: 637
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 121

Conread position: 72-685
Cow position:
Alignm length: 638
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-686
Cow position:
Alignm length: 641
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 56

Conread position: 72-906
Cow position:
Alignm length: 858
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 152

Conread position: 74-585
Cow position:
Alignm length: 530
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 74-685
Cow position:
Alignm length: 631
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 74-685
Cow position:
Alignm length: 635
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 139

Conread position: 74-686
Cow position:
Alignm length: 635
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 32

Conread position: 75-685
Cow position:
Alignm length: 635
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 149

Conread position: 75-685
Cow position:
Alignm length: 645
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 150

Conread position: 76-685
Cow position:
Alignm length: 636
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 154

Conread position: 84-686
Cow position:
Alignm length: 626
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 56

Conread position: 89-252
Cow position:
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 123

Conread position: 93-685
Cow position:
Alignm length: 615
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 132

Conread position: 96-685
Cow position:
Alignm length: 617
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 128

Conread position: 101-685
Cow position:
Alignm length: 606
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 13

Conread position: 111-603
Cow position:
Alignm length: 515
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 113

Conread position: 111-684
Cow position:
Alignm length: 593
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 110

Conread position: 118-685
Cow position:
Alignm length: 589
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 104

Conread position: 123-685
Cow position:
Alignm length: 586
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 107

Conread position: 132-370
Cow position:
Alignm length: 251
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 93

Conread position: 162-684
Cow position:
Alignm length: 542
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 58

Conread position: 163-685
Cow position:
Alignm length: 542
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 57

Conread position: 165-473
Cow position:
Alignm length: 315
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 19

Conread position: 165-686
Cow position:
Alignm length: 539
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 19

Conread position: 184-638
Cow position:
Alignm length: 472
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 35

Conread position: 184-686
Cow position:
Alignm length: 522
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 35

Conread position: 190-610
Cow position:
Alignm length: 438
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 29

Conread position: 190-663
Cow position:
Alignm length: 497
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 29

Conread position: 190-685
Cow position:
Alignm length: 515
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 29

Conread position: 199-598
Cow position:
Alignm length: 418
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 20

Conread position: 199-685
Cow position:
Alignm length: 504
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 20

Conread position: 201-684
Cow position:
Alignm length: 518
Alignm identity: 342
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 86, 18

Conread position: 216-425
Cow position:
Alignm length: 217
Alignm identity: 155
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 98, 148

Conread position: 226-413
Cow position:
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 226-685
Cow position:
Alignm length: 477
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 138

Conread position: 232-685
Cow position:
Alignm length: 472
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 129

Conread position: 241-685
Cow position:
Alignm length: 454
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 85

Conread position: 243-685
Cow position:
Alignm length: 474
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 130

Conread position: 251-665
Cow position:
Alignm length: 437
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 124

Conread position: 257-685
Cow position:
Alignm length: 447
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 24

Conread position: 260-514
Cow position:
Alignm length: 270
Alignm identity: 190
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 47, 108

Conread position: 274-727
Cow position:
Alignm length: 481
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 91

Conread position: 280-684
Cow position:
Alignm length: 426
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 54

Conread position: 283-685
Cow position:
Alignm length: 427
Alignm identity: 285
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 34, 53

Conread position: 287-685
Cow position:
Alignm length: 421
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 81

Conread position: 294-683
Cow position:
Alignm length: 414
Alignm identity: 277
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 23, 69

Conread position: 313-684
Cow position:
Alignm length: 383
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 9

Conread position: 313-685
Cow position:
Alignm length: 381
Alignm identity: 268
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 148, 45

Conread position: 313-685
Cow position:
Alignm length: 384
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 45

Conread position: 323-611
Cow position:
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 36

Conread position: 324-668
Cow position:
Alignm length: 357
Alignm identity: 229
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 143, 31

Conread position: 328-662
Cow position:
Alignm length: 346
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 35

Conread position: 328-686
Cow position:
Alignm length: 370
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 30

Conread position: 329-660
Cow position:
Alignm length: 341
Alignm identity: 226
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 26

Conread position: 332-677
Cow position:
Alignm length: 352
Alignm identity: 246
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 127, 23

Conread position: 342-685
Cow position:
Alignm length: 356
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 13

Conread position: 344-565
Cow position:
Alignm length: 236
Alignm identity: 167
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 345-685
Cow position:
Alignm length: 352
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 13

Conread position: 354-685
Cow position:
Alignm length: 345
Alignm identity: 247
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 93, 8

Conread position: 368-685
Cow position:
Alignm length: 329
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 77

Conread position: 377-670
Cow position:
Alignm length: 306
Alignm identity: 223
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 27, 16

Conread position: 383-711
Cow position:
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 395-685
Cow position:
Alignm length: 305
Alignm identity: 205
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 72, 224

Conread position: 400-685
Cow position:
Alignm length: 296
Alignm identity: 213
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 89, 67

Conread position: 403-774
Cow position:
Alignm length: 389
Alignm identity: 263
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 14, 123

Conread position: 410-685
Cow position:
Alignm length: 286
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 89, 25

Conread position: 416-670
Cow position:
Alignm length: 265
Alignm identity: 198
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 58, 191

Conread position: 419-680
Cow position:
Alignm length: 275
Alignm identity: 186
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 32, 56

Conread position: 419-774
Cow position:
Alignm length: 379
Alignm identity: 253
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 170

Conread position: 420-656
Cow position:
Alignm length: 248
Alignm identity: 180
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 42, 0

Conread position: 422-684
Cow position:
Alignm length: 273
Alignm identity: 192
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 56, 34

Conread position: 423-685
Cow position:
Alignm length: 274
Alignm identity: 200
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 39, 254

Conread position: 423-685
Cow position:
Alignm length: 272
Alignm identity: 196
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 33, 97

Conread position: 426-728
Cow position:
Alignm length: 324
Alignm identity: 230
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 24, 55

Conread position: 431-636
Cow position:
Alignm length: 217
Alignm identity: 155
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 440-685
Cow position:
Alignm length: 257
Alignm identity: 188
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 22, 235

Conread position: 442-685
Cow position:
Alignm length: 250
Alignm identity: 182
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 48, 33

Conread position: 443-685
Cow position:
Alignm length: 254
Alignm identity: 178
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 19, 232

Conread position: 473-685
Cow position:
Alignm length: 219
Alignm identity: 164
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 21, 112

Conread position: 475-684
Cow position:
Alignm length: 217
Alignm identity: 164
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 24, 198

Conread position: 475-685
Cow position:
Alignm length: 217
Alignm identity: 161
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 15, 91

Conread position: 475-685
Cow position:
Alignm length: 224
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 155

Conread position: 475-774
Cow position:
Alignm length: 313
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 269

Conread position: 477-685
Cow position:
Alignm length: 215
Alignm identity: 149
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 23, 73

Conread position: 477-685
Cow position:
Alignm length: 211
Alignm identity: 157
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 24, 190

Conread position: 488-685
Cow position:
Alignm length: 200
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 178

Conread position: 500-668
Cow position:
Alignm length: 170
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 53, 38

Conread position: 505-684
Cow position:
Alignm length: 181
Alignm identity: 135
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 142

Conread position: 506-684
Cow position:
Alignm length: 180
Alignm identity: 135
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 169

Conread position: 506-685
Cow position:
Alignm length: 181
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 160

Conread position: 524-685
Cow position:
Alignm length: 162
Alignm identity: 123
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 142, 0

Conread position: 531-731
Cow position:
Alignm length: 207
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 19, 57

Conread position: 544-685
Cow position:
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 121

Conread position: 553-774
Cow position:
Alignm length: 238
Alignm identity: 164
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 189

Conread position: 569-685
Cow position:
Alignm length: 117
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 732-842
Cow position:
Alignm length: 115
Alignm identity: 95
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 82, 30

Show alignments to all cow chromosomes.