Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01C070097.5 |
| Conread position: | 3-685 |
| Cow position: | chr27:21450954-21451649 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 40 |
| Conread position: | 5-685 |
| Cow position: | chr27:27500747-27501414 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 8-407 |
| Cow position: | chr27:25059644-25060038 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 278 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 21, 204 |
| Conread position: | 11-455 |
| Cow position: | chr27:6017159-6017605 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 14-684 |
| Cow position: | chr27:26855571-26856262 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 217 |
| Conread position: | 19-289 |
| Cow position: | chr27:29952780-29953056 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 19-313 |
| Cow position: | chr27:8261173-8261473 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 36, 127 |
| Conread position: | 19-355 |
| Cow position: | chr27:20283299-20282959 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 19-665 |
| Cow position: | chr27:12749546-12750211 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 212 |
| Conread position: | 19-685 |
| Cow position: | chr27:15273558-15272863 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 19-685 |
| Cow position: | chr27:15374344-15375019 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 277 |
| Conread position: | 21-564 |
| Cow position: | chr27:22722873-22723440 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 84 |
| Conread position: | 22-536 |
| Cow position: | chr27:9332262-9332798 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 210 |
| Conread position: | 23-684 |
| Cow position: | chr27:9255612-9254938 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 203 |
| Conread position: | 27-351 |
| Cow position: | chr27:21284673-21284334 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 33-684 |
| Cow position: | chr27:5991511-5990842 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 114 |
| Conread position: | 35-268 |
| Cow position: | chr27:3995366-3995123 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 195 |
| Conread position: | 35-671 |
| Cow position: | chr27:30584628-30583975 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 194 |
| Conread position: | 47-685 |
| Cow position: | chr27:30750817-30750190 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 49-302 |
| Cow position: | chr27:25988919-25989175 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 24, 171 |
| Conread position: | 49-370 |
| Cow position: | chr27:1498608-1498925 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 10 |
| Conread position: | 49-379 |
| Cow position: | chr27:25786063-25785725 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 164 |
| Conread position: | 49-379 |
| Cow position: | chr27:26552877-26552551 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 111 |
| Conread position: | 49-426 |
| Cow position: | chr27:28923552-28923944 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 26, 186 |
| Conread position: | 49-682 |
| Cow position: | chr27:17567658-17568303 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 54-625 |
| Cow position: | chr27:13900447-13901040 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 175 |
| Conread position: | 54-685 |
| Cow position: | chr27:3232971-3232329 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 59-305 |
| Cow position: | chr27:16788891-16788647 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 59-490 |
| Cow position: | chr27:8591625-8592071 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 61 |
| Conread position: | 59-685 |
| Cow position: | chr27:23318366-23317737 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 61-685 |
| Cow position: | chr27:31267797-31268421 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 69-356 |
| Cow position: | chr27:12262870-12262580 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 69-685 |
| Cow position: | chr27:166352-165714 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 156 |
| Conread position: | 70-683 |
| Cow position: | chr27:29859048-29859644 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 393 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 152 |
| Conread position: | 71-683 |
| Cow position: | chr27:25965376-25964756 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 72-295 |
| Cow position: | chr27:27235920-27236148 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 85, 148 |
| Conread position: | 72-306 |
| Cow position: | chr27:17404290-17404051 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 15, 153 |
| Conread position: | 72-314 |
| Cow position: | chr27:28294289-28294043 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 14, 129 |
| Conread position: | 72-356 |
| Cow position: | chr27:1031414-1031707 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 153 |
| Conread position: | 72-395 |
| Cow position: | chr27:20761258-20761588 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 72-451 |
| Cow position: | chr27:28686125-28685739 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 72-493 |
| Cow position: | chr27:18696913-18697349 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 153 |
| Conread position: | 72-528 |
| Cow position: | chr27:26599500-26599961 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 72-644 |
| Cow position: | chr27:12147071-12146478 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 153 |
| Conread position: | 72-671 |
| Cow position: | chr27:24114724-24115316 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 395 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 72-674 |
| Cow position: | chr27:8960457-8959835 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 153 |
| Conread position: | 72-683 |
| Cow position: | chr27:16427258-16427866 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 72-684 |
| Cow position: | chr27:1535757-1536374 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 152 |
| Conread position: | 72-685 |
| Cow position: | chr27:1520253-1520885 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 119 |
| Conread position: | 72-685 |
| Cow position: | chr27:5984458-5983825 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 72-685 |
| Cow position: | chr27:13352869-13353511 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 72-685 |
| Cow position: | chr27:14296798-14297412 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 81 |
| Conread position: | 72-685 |
| Cow position: | chr27:16031825-16031192 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 153 |
| Conread position: | 72-685 |
| Cow position: | chr27:27665578-27666211 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 72-685 |
| Cow position: | chr27:29036798-29036175 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 153 |
| Conread position: | 73-429 |
| Cow position: | chr27:11488589-11488946 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 138 |
| Conread position: | 74-306 |
| Cow position: | chr27:26327637-26327872 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 89, 149 |
| Conread position: | 74-442 |
| Cow position: | chr27:8200382-8200758 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 150 |
| Conread position: | 74-492 |
| Cow position: | chr27:15034517-15034087 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 150 |
| Conread position: | 74-685 |
| Cow position: | chr27:4981947-4982577 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 150 |
| Conread position: | 74-685 |
| Cow position: | chr27:9990631-9989998 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 74 |
| Conread position: | 74-685 |
| Cow position: | chr27:15634757-15634137 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 145 |
| Conread position: | 74-685 |
| Cow position: | chr27:19524137-19523503 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 150 |
| Conread position: | 74-685 |
| Cow position: | chr27:20809989-20810626 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 150 |
| Conread position: | 75-427 |
| Cow position: | chr27:2896911-2897269 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 75-461 |
| Cow position: | chr27:3991589-3991976 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 75-685 |
| Cow position: | chr27:27729898-27729282 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 78-685 |
| Cow position: | chr27:5924833-5925478 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 152 |
| Conread position: | 79-303 |
| Cow position: | chr27:25972043-25971811 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 80-685 |
| Cow position: | chr27:19487604-19488209 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 473, 587 |
| Conread position: | 81-614 |
| Cow position: | chr27:30035391-30035952 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 141 |
| Conread position: | 84-406 |
| Cow position: | chr27:26657336-26657019 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 133 |
| Conread position: | 84-685 |
| Cow position: | chr27:5913527-5914138 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 85-414 |
| Cow position: | chr27:2380173-2380507 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 35, 140 |
| Conread position: | 85-446 |
| Cow position: | chr27:26031481-26031122 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 85-685 |
| Cow position: | chr27:8726165-8726783 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 135 |
| Conread position: | 88-552 |
| Cow position: | chr27:22742812-22742342 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 10 |
| Conread position: | 88-685 |
| Cow position: | chr27:27290983-27291594 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 100-756 |
| Cow position: | chr27:15405253-15405915 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 111-631 |
| Cow position: | chr27:10378799-10379338 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 112-391 |
| Cow position: | chr27:26452812-26452525 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 35, 112 |
| Conread position: | 113-685 |
| Cow position: | chr27:15543629-15544220 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 111 |
| Conread position: | 117-685 |
| Cow position: | chr27:25801585-25801000 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 157-675 |
| Cow position: | chr27:865270-865818 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 368 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 162-436 |
| Cow position: | chr27:15874416-15874142 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 162-683 |
| Cow position: | chr27:6030463-6030971 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 167-648 |
| Cow position: | chr27:23075272-23074778 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 53 |
| Conread position: | 189-355 |
| Cow position: | chr27:2348538-2348709 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 118, 30 |
| Conread position: | 190-493 |
| Cow position: | chr27:773471-773783 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 29 |
| Conread position: | 190-625 |
| Cow position: | chr27:22648210-22647760 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 29 |
| Conread position: | 190-733 |
| Cow position: | chr27:30571529-30572090 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 192-686 |
| Cow position: | chr27:8426560-8427063 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 27 |
| Conread position: | 197-685 |
| Cow position: | chr27:8972150-8972649 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 22 |
| Conread position: | 198-602 |
| Cow position: | chr27:8297943-8297536 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 100, 21 |
| Conread position: | 205-452 |
| Cow position: | chr27:24260984-24260726 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 83, 170 |
| Conread position: | 226-682 |
| Cow position: | chr27:1082432-1081960 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 139 |
| Conread position: | 233-685 |
| Cow position: | chr27:4332003-4331535 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 132 |
| Conread position: | 237-494 |
| Cow position: | chr27:8428553-8428812 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 80, 39 |
| Conread position: | 239-686 |
| Cow position: | chr27:28894739-28895208 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 243-686 |
| Cow position: | chr27:25799006-25799463 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 128 |
| Conread position: | 244-686 |
| Cow position: | chr27:27044932-27045383 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 120 |
| Conread position: | 278-685 |
| Cow position: | chr27:3759656-3760073 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 86 |
| Conread position: | 280-685 |
| Cow position: | chr27:2000628-2001050 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 280-685 |
| Cow position: | chr27:10578731-10579152 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 283-685 |
| Cow position: | chr27:24296474-24296064 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 75 |
| Conread position: | 283-685 |
| Cow position: | chr27:25971804-25971396 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 20 |
| Conread position: | 283-685 |
| Cow position: | chr27:28051972-28051579 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 67 |
| Conread position: | 287-675 |
| Cow position: | chr27:17422384-17422779 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 288-694 |
| Cow position: | chr27:31249050-31249456 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 290-685 |
| Cow position: | chr27:27235305-27234899 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 307 |
| Conread position: | 313-507 |
| Cow position: | chr27:22329038-22329237 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 137, 45 |
| Conread position: | 313-517 |
| Cow position: | chr27:8261675-8261881 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 136, 52 |
| Conread position: | 313-595 |
| Cow position: | chr27:29447252-29446960 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 45 |
| Conread position: | 313-626 |
| Cow position: | chr27:16788616-16788285 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 119, 50 |
| Conread position: | 313-685 |
| Cow position: | chr27:29811160-29811532 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 24 |
| Conread position: | 313-686 |
| Cow position: | chr27:26784646-26785028 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 45 |
| Conread position: | 324-685 |
| Cow position: | chr27:26329768-26330137 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 34 |
| Conread position: | 333-677 |
| Cow position: | chr27:27556652-27557003 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 30 |
| Conread position: | 341-623 |
| Cow position: | chr27:7911835-7912124 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 355-780 |
| Cow position: | chr27:1501426-1501826 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 198, 110 |
| Conread position: | 363-685 |
| Cow position: | chr27:21204329-21204003 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 107 |
| Conread position: | 366-685 |
| Cow position: | chr27:1188530-1188871 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 322 |
| Conread position: | 383-663 |
| Cow position: | chr27:21284336-21284050 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 232 |
| Conread position: | 390-685 |
| Cow position: | chr27:13308544-13308849 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 287 |
| Conread position: | 390-685 |
| Cow position: | chr27:27849170-27849475 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 285 |
| Conread position: | 395-683 |
| Cow position: | chr27:21342434-21342729 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 281 |
| Conread position: | 396-685 |
| Cow position: | chr27:2558085-2557786 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 281 |
| Conread position: | 405-685 |
| Cow position: | chr27:11434091-11434380 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 175 |
| Conread position: | 409-631 |
| Cow position: | chr27:15926000-15925767 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 414-685 |
| Cow position: | chr27:22797732-22797452 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 415-685 |
| Cow position: | chr27:8200863-8201143 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 59, 95 |
| Conread position: | 425-685 |
| Cow position: | chr27:4768370-4768640 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 37, 250 |
| Conread position: | 431-683 |
| Cow position: | chr27:11489579-11489845 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 248 |
| Conread position: | 431-685 |
| Cow position: | chr27:526157-525894 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 31, 245 |
| Conread position: | 436-686 |
| Cow position: | chr27:25784800-25784548 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 436-767 |
| Cow position: | chr27:344973-344630 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 22, 236 |
| Conread position: | 438-774 |
| Cow position: | chr27:12281649-12281999 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 470-685 |
| Cow position: | chr27:8290831-8291048 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 31, 100 |
| Conread position: | 470-685 |
| Cow position: | chr27:19424393-19424172 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 203 |
| Conread position: | 475-617 |
| Cow position: | chr27:2681311-2681458 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 475-671 |
| Cow position: | chr27:30307278-30307078 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 15, 131 |
| Conread position: | 475-685 |
| Cow position: | chr27:3990810-3990595 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 192 |
| Conread position: | 475-685 |
| Cow position: | chr27:18473246-18473449 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 24, 110 |
| Conread position: | 476-686 |
| Cow position: | chr27:12277102-12277316 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 167 |
| Conread position: | 480-685 |
| Cow position: | chr27:19932567-19932361 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 188 |
| Conread position: | 483-683 |
| Cow position: | chr27:15872327-15872116 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 14 |
| Conread position: | 486-686 |
| Cow position: | chr27:4804795-4804994 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 491-731 |
| Cow position: | chr27:4823835-4824090 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 500-685 |
| Cow position: | chr27:6017926-6018106 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 500-685 |
| Cow position: | chr27:8429022-8429208 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 52, 168 |
| Conread position: | 502-685 |
| Cow position: | chr27:6524257-6524073 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 88 |
| Conread position: | 505-771 |
| Cow position: | chr27:22329521-22329805 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 61 |
| Conread position: | 506-685 |
| Cow position: | chr27:3653673-3653495 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 47, 21 |
| Conread position: | 506-685 |
| Cow position: | chr27:12006174-12006353 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 161 |
| Conread position: | 511-684 |
| Cow position: | chr27:4828530-4828704 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 156 |
| Conread position: | 515-659 |
| Cow position: | chr27:3866202-3866347 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 524-767 |
| Cow position: | chr27:13183219-13182974 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 167 |
| Conread position: | 525-685 |
| Cow position: | chr27:20001461-20001621 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 28, 140 |
| Conread position: | 535-685 |
| Cow position: | chr27:24260724-24260576 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 42 |
| Conread position: | 538-685 |
| Cow position: | chr27:27930265-27930413 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 543-685 |
| Cow position: | chr27:15348725-15348867 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 124 |
| Conread position: | 553-781 |
| Cow position: | chr27:14669271-14669503 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 192 |
| Conread position: | 582-716 |
| Cow position: | chr27:11256562-11256431 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 95, 84 |
Show alignments to all cow chromosomes.