Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01C070097.5 | 
| Conread position: | 3-492 | 
| Cow position: | chr6:225433-224931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 515 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 57, 104 | 
| Conread position: | 3-685 | 
| Cow position: | chr6:7192065-7191394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 708 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 44 | 
| Conread position: | 14-730 | 
| Cow position: | chr6:7161294-7162004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 739 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 29, 42 | 
| Conread position: | 16-685 | 
| Cow position: | chr6:25375606-25374928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 701 | 
| Alignm identity: | 471 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 206 | 
| Conread position: | 17-312 | 
| Cow position: | chr6:62488003-62487698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 38, 217 | 
| Conread position: | 18-574 | 
| Cow position: | chr6:14264323-14264907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 109 | 
| Conread position: | 18-671 | 
| Cow position: | chr6:63405297-63405976 (view UCSC Genome Browser custom track) | 
| Alignm length: | 694 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 35 | 
| Conread position: | 19-383 | 
| Cow position: | chr6:34237529-34237147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 211 | 
| Conread position: | 19-463 | 
| Cow position: | chr6:25358397-25357928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 22, 205 | 
| Conread position: | 19-530 | 
| Cow position: | chr6:14133254-14132718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 539 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 211 | 
| Conread position: | 19-643 | 
| Cow position: | chr6:45591037-45591687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 653 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 216 | 
| Conread position: | 19-662 | 
| Cow position: | chr6:27341103-27341759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 664 | 
| Alignm identity: | 425 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 109 | 
| Conread position: | 19-663 | 
| Cow position: | chr6:37385643-37386307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 10 | 
| Conread position: | 19-685 | 
| Cow position: | chr6:9738776-9738074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 708 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 218 | 
| Conread position: | 19-685 | 
| Cow position: | chr6:16767346-16766660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 694 | 
| Alignm identity: | 483 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 210 | 
| Conread position: | 19-685 | 
| Cow position: | chr6:21975441-21976131 (view UCSC Genome Browser custom track) | 
| Alignm length: | 696 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 212 | 
| Conread position: | 19-685 | 
| Cow position: | chr6:28159910-28160589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 40 | 
| Conread position: | 19-685 | 
| Cow position: | chr6:33465454-33466138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 693 | 
| Alignm identity: | 481 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 132 | 
| Conread position: | 19-685 | 
| Cow position: | chr6:43798410-43797721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 701 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 70 | 
| Conread position: | 19-685 | 
| Cow position: | chr6:50112591-50113232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 128 | 
| Conread position: | 19-685 | 
| Cow position: | chr6:56452607-56451915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 696 | 
| Alignm identity: | 484 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 212 | 
| Conread position: | 19-685 | 
| Cow position: | chr6:59618554-59619256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 707 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 212 | 
| Conread position: | 19-686 | 
| Cow position: | chr6:38874170-38873480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 698 | 
| Alignm identity: | 489 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 180 | 
| Conread position: | 19-686 | 
| Cow position: | chr6:53810117-53810771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 31, 110 | 
| Conread position: | 19-711 | 
| Cow position: | chr6:55238183-55238912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 733 | 
| Alignm identity: | 512 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 212 | 
| Conread position: | 19-728 | 
| Cow position: | chr6:59595740-59596480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 760 | 
| Alignm identity: | 515 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 147 | 
| Conread position: | 19-775 | 
| Cow position: | chr6:50636778-50637559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 797 | 
| Alignm identity: | 535 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 207 | 
| Conread position: | 20-685 | 
| Cow position: | chr6:31010326-31009638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 706 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 91 | 
| Conread position: | 21-680 | 
| Cow position: | chr6:6162630-6163304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 694 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 191 | 
| Conread position: | 22-458 | 
| Cow position: | chr6:13849565-13850015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 171 | 
| Conread position: | 22-685 | 
| Cow position: | chr6:16595500-16596161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 685 | 
| Alignm identity: | 435 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 37 | 
| Conread position: | 22-685 | 
| Cow position: | chr6:37387070-37387758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 695 | 
| Alignm identity: | 495 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 210 | 
| Conread position: | 22-685 | 
| Cow position: | chr6:39332040-39331351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 694 | 
| Alignm identity: | 483 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 210 | 
| Conread position: | 22-725 | 
| Cow position: | chr6:2580911-2581637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 740 | 
| Alignm identity: | 511 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 126 | 
| Conread position: | 25-285 | 
| Cow position: | chr6:38612050-38611789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 48, 10 | 
| Conread position: | 25-425 | 
| Cow position: | chr6:34029777-34030162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 68 | 
| Conread position: | 25-507 | 
| Cow position: | chr6:67266771-67267264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 198 | 
| Conread position: | 25-516 | 
| Cow position: | chr6:66746880-66747361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 41, 194 | 
| Conread position: | 25-685 | 
| Cow position: | chr6:17595788-17595105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 34 | 
| Conread position: | 25-685 | 
| Cow position: | chr6:19104412-19103728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 690 | 
| Alignm identity: | 484 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 25 | 
| Conread position: | 25-685 | 
| Cow position: | chr6:28001884-28001211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 692 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 34 | 
| Conread position: | 25-685 | 
| Cow position: | chr6:39911825-39912504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 480 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 34 | 
| Conread position: | 25-685 | 
| Cow position: | chr6:47040702-47040029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 689 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 10 | 
| Conread position: | 26-306 | 
| Cow position: | chr6:28702211-28701926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 45, 33 | 
| Conread position: | 26-685 | 
| Cow position: | chr6:12514016-12514672 (view UCSC Genome Browser custom track) | 
| Alignm length: | 680 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 202 | 
| Conread position: | 27-356 | 
| Cow position: | chr6:9264834-9264494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 46, 32 | 
| Conread position: | 27-664 | 
| Cow position: | chr6:7941281-7940628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 15, 86 | 
| Conread position: | 28-635 | 
| Cow position: | chr6:32488418-32487799 (view UCSC Genome Browser custom track) | 
| Alignm length: | 631 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 13, 98 | 
| Conread position: | 28-663 | 
| Cow position: | chr6:14840351-14840993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 657 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 83 | 
| Conread position: | 30-725 | 
| Cow position: | chr6:19329434-19328736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 718 | 
| Alignm identity: | 454 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 134 | 
| Conread position: | 31-685 | 
| Cow position: | chr6:9840641-9839955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 698 | 
| Alignm identity: | 516 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 101 | 
| Conread position: | 31-685 | 
| Cow position: | chr6:28064489-28065171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 484 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 87 | 
| Conread position: | 33-286 | 
| Cow position: | chr6:1097356-1097097 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 22, 84 | 
| Conread position: | 35-371 | 
| Cow position: | chr6:30318247-30317910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 38, 22 | 
| Conread position: | 35-685 | 
| Cow position: | chr6:6720499-6721150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 24 | 
| Conread position: | 36-446 | 
| Cow position: | chr6:1053905-1053504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 277, 79 | 
| Conread position: | 37-314 | 
| Cow position: | chr6:13696657-13696376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 115, 107 | 
| Conread position: | 47-403 | 
| Cow position: | chr6:11164015-11163653 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 26, 7 | 
| Conread position: | 49-361 | 
| Cow position: | chr6:15179732-15180048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 9e-25 | 
| Alignm gaps (pig, cow): | 24, 166 | 
| Conread position: | 49-416 | 
| Cow position: | chr6:617680-618057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 173 | 
| Conread position: | 49-497 | 
| Cow position: | chr6:26653444-26653890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 35, 29 | 
| Conread position: | 49-572 | 
| Cow position: | chr6:66547979-66548537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 180 | 
| Conread position: | 49-631 | 
| Cow position: | chr6:44096360-44096953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 437 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 30 | 
| Conread position: | 49-685 | 
| Cow position: | chr6:47849388-47848728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 442 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 170 | 
| Conread position: | 49-686 | 
| Cow position: | chr6:28550554-28549873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 51 | 
| Conread position: | 50-671 | 
| Cow position: | chr6:16704205-16703577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 642 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 173 | 
| Conread position: | 50-686 | 
| Cow position: | chr6:41676460-41677115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 661 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 66 | 
| Conread position: | 51-685 | 
| Cow position: | chr6:35723937-35724565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 423 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 8 | 
| Conread position: | 51-685 | 
| Cow position: | chr6:60168027-60167378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 661 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 168 | 
| Conread position: | 54-685 | 
| Cow position: | chr6:36530812-36531453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 651 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 172 | 
| Conread position: | 54-686 | 
| Cow position: | chr6:10235734-10236377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 656 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 129 | 
| Conread position: | 59-272 | 
| Cow position: | chr6:69144927-69145145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 14, 48 | 
| Conread position: | 59-302 | 
| Cow position: | chr6:41414780-41414528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 14, 166 | 
| Conread position: | 59-314 | 
| Cow position: | chr6:8636433-8636184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 126, 19 | 
| Conread position: | 59-492 | 
| Cow position: | chr6:64252150-64251709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 62 | 
| Conread position: | 59-493 | 
| Cow position: | chr6:35824385-35824825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 153 | 
| Conread position: | 59-546 | 
| Cow position: | chr6:10634613-10635121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 373 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 48 | 
| Conread position: | 59-603 | 
| Cow position: | chr6:237335-236777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 566 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 93 | 
| Conread position: | 59-607 | 
| Cow position: | chr6:15031325-15030751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 60 | 
| Conread position: | 59-681 | 
| Cow position: | chr6:6165194-6165821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 60 | 
| Conread position: | 59-686 | 
| Cow position: | chr6:62852137-62852752 (view UCSC Genome Browser custom track) | 
| Alignm length: | 646 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 2.8026e-45 | 
| Alignm gaps (pig, cow): | 28, 52 | 
| Conread position: | 60-314 | 
| Cow position: | chr6:58750503-58750240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 15, 170 | 
| Conread position: | 60-590 | 
| Cow position: | chr6:18496846-18497386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 557 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 173 | 
| Conread position: | 61-724 | 
| Cow position: | chr6:28108749-28108068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 705 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 16, 88 | 
| Conread position: | 62-421 | 
| Cow position: | chr6:40318128-40318496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 23, 163 | 
| Conread position: | 63-668 | 
| Cow position: | chr6:55844387-55844994 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 15, 165 | 
| Conread position: | 63-684 | 
| Cow position: | chr6:65929786-65930437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 659 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 42 | 
| Conread position: | 64-573 | 
| Cow position: | chr6:17353774-17353247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 542 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 17, 158 | 
| Conread position: | 65-451 | 
| Cow position: | chr6:28518379-28517987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 8, 163 | 
| Conread position: | 65-452 | 
| Cow position: | chr6:67212237-67211844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 159 | 
| Conread position: | 65-711 | 
| Cow position: | chr6:16592509-16593172 (view UCSC Genome Browser custom track) | 
| Alignm length: | 672 | 
| Alignm identity: | 491 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 144 | 
| Conread position: | 66-685 | 
| Cow position: | chr6:34493218-34493855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 645 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 6 | 
| Conread position: | 66-685 | 
| Cow position: | chr6:34504981-34504341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 646 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 6 | 
| Conread position: | 66-685 | 
| Cow position: | chr6:40864492-40863849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 651 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 62 | 
| Conread position: | 67-685 | 
| Cow position: | chr6:12646780-12647408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 444 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 33 | 
| Conread position: | 68-332 | 
| Cow position: | chr6:5130775-5130506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 17, 155 | 
| Conread position: | 69-302 | 
| Cow position: | chr6:15278003-15277766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 78, 155 | 
| Conread position: | 69-685 | 
| Cow position: | chr6:14928005-14928639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 98 | 
| Conread position: | 70-694 | 
| Cow position: | chr6:30806311-30805677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 654 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 17, 33 | 
| Conread position: | 72-272 | 
| Cow position: | chr6:39349940-39350145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 15, 144 | 
| Conread position: | 72-304 | 
| Cow position: | chr6:29479546-29479781 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 15, 117 | 
| Conread position: | 72-306 | 
| Cow position: | chr6:31813450-31813211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-306 | 
| Cow position: | chr6:58390791-58390552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-356 | 
| Cow position: | chr6:28186286-28185991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 8e-34 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-360 | 
| Cow position: | chr6:7176765-7176478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 7e-23 | 
| Alignm gaps (pig, cow): | 9, 31 | 
| Conread position: | 72-364 | 
| Cow position: | chr6:13979310-13979612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 14, 153 | 
| Conread position: | 72-388 | 
| Cow position: | chr6:63922514-63922834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 15, 69 | 
| Conread position: | 72-407 | 
| Cow position: | chr6:26325879-26325534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-411 | 
| Cow position: | chr6:46296820-46297169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-426 | 
| Cow position: | chr6:18912927-18912563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-449 | 
| Cow position: | chr6:33810338-33810725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-450 | 
| Cow position: | chr6:65905747-65905362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 153 | 
| Conread position: | 72-452 | 
| Cow position: | chr6:28400703-28400314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 128 | 
| Conread position: | 72-461 | 
| Cow position: | chr6:51895532-51895140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 29 | 
| Conread position: | 72-466 | 
| Cow position: | chr6:39956614-39957013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 7.00649e-43 | 
| Alignm gaps (pig, cow): | 15, 115 | 
| Conread position: | 72-475 | 
| Cow position: | chr6:1796120-1795710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-494 | 
| Cow position: | chr6:2377251-2377688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-539 | 
| Cow position: | chr6:35967919-35967432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-554 | 
| Cow position: | chr6:12971370-12970873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-610 | 
| Cow position: | chr6:41389905-41389350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 563 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-611 | 
| Cow position: | chr6:8756270-8755710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 564 | 
| Alignm identity: | 404 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 35 | 
| Conread position: | 72-662 | 
| Cow position: | chr6:42266284-42266896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 83 | 
| Conread position: | 72-665 | 
| Cow position: | chr6:40277615-40278220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 612 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 84 | 
| Conread position: | 72-668 | 
| Cow position: | chr6:65936104-65935478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 15, 139 | 
| Conread position: | 72-671 | 
| Cow position: | chr6:62577635-62577016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-675 | 
| Cow position: | chr6:16050743-16050121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-683 | 
| Cow position: | chr6:2876484-2875854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-683 | 
| Cow position: | chr6:50720652-50721276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 32 | 
| Conread position: | 72-684 | 
| Cow position: | chr6:9734404-9733791 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 92 | 
| Conread position: | 72-684 | 
| Cow position: | chr6:40158954-40158337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 36 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:127585-126952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:182995-182360 (view UCSC Genome Browser custom track) | 
| Alignm length: | 640 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 152 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:328812-328183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:478095-478730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 640 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 156 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:916592-917223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 461 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 70 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:1507960-1507330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 123 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:3151776-3152398 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 69 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:7138788-7138161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 93 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:7468104-7467470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:10043762-10044395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 148 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:10267537-10266911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 39 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:10611375-10612007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 149 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:11019204-11019837 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:11722647-11722028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 152 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:11870384-11869754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:12663766-12663135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 151 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:13308838-13308216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:14305188-14305804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 414 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:15963342-15962739 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 291 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:19713683-19713054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 454 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 142 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:20351542-20350909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:21833099-21832480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 152 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:22738150-22737526 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:27151893-27151261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:28171454-28172091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 643 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 93 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:28489018-28488398 (view UCSC Genome Browser custom track) | 
| Alignm length: | 629 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 148 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:34129004-34129637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 154 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:41231037-41231668 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 152 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:43620278-43620911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:43791025-43790396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 54 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:44018282-44017648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 446 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 154 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:50570749-50571371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 442 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:51149489-51150122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:51732629-51733261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:51867542-51868169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:53936079-53935454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 646 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 135 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:60378710-60379343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 454 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:62664323-62664955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 446 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 29 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:64718870-64719498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 89 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:65867335-65867964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 465 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 32 | 
| Conread position: | 72-685 | 
| Cow position: | chr6:68029724-68030359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-686 | 
| Cow position: | chr6:26668477-26667843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 153 | 
| Conread position: | 72-686 | 
| Cow position: | chr6:43330860-43330238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 32 | 
| Conread position: | 72-757 | 
| Cow position: | chr6:33950619-33949893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 736 | 
| Alignm identity: | 485 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 314 | 
| Conread position: | 73-604 | 
| Cow position: | chr6:18751635-18751106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 541 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 14, 55 | 
| Conread position: | 73-657 | 
| Cow position: | chr6:41050542-41051148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 616 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 19, 152 | 
| Conread position: | 74-281 | 
| Cow position: | chr6:25216849-25217060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 66, 150 | 
| Conread position: | 74-410 | 
| Cow position: | chr6:66562077-66562422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-492 | 
| Cow position: | chr6:39435371-39434945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-635 | 
| Cow position: | chr6:55901796-55902355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 580 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 150 | 
| Conread position: | 74-684 | 
| Cow position: | chr6:48875781-48875161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:49022-48392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:3272929-3272301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 125 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:3485848-3485239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 625 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:3886956-3886325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:5947225-5946595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 145 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:8204730-8205368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 641 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:8536743-8536115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:15138616-15137993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 452 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:15480148-15480751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 33 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:17120938-17121566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 451 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 112 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:24241841-24242469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:25791148-25790519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 132 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:27474964-27475591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:35874158-35873549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 630 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 146 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:39999906-39999277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:40974736-40975366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 454 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:41191875-41192506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 442 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 13 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:51717096-51717735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 643 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:55539719-55539091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 150 | 
| Conread position: | 74-685 | 
| Cow position: | chr6:60875848-60876476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 295 | 
| Conread position: | 74-727 | 
| Cow position: | chr6:24584821-24584159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 680 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 156 | 
| Conread position: | 75-306 | 
| Cow position: | chr6:18514088-18514323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 12, 149 | 
| Conread position: | 75-373 | 
| Cow position: | chr6:13367629-13367937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 12, 150 | 
| Conread position: | 75-417 | 
| Cow position: | chr6:28135485-28135836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 6.00036e-42 | 
| Alignm gaps (pig, cow): | 12, 35 | 
| Conread position: | 75-685 | 
| Cow position: | chr6:3573335-3573972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 647 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 221 | 
| Conread position: | 75-685 | 
| Cow position: | chr6:28103312-28102690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 446 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 124 | 
| Conread position: | 75-685 | 
| Cow position: | chr6:65820032-65819400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 637 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 150 | 
| Conread position: | 77-436 | 
| Cow position: | chr6:27527433-27527066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 147 | 
| Conread position: | 77-685 | 
| Cow position: | chr6:1536263-1536885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 632 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 147 | 
| Conread position: | 78-507 | 
| Cow position: | chr6:67097862-67098311 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 76, 178 | 
| Conread position: | 79-685 | 
| Cow position: | chr6:43186657-43187289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 436 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 8 | 
| Conread position: | 82-628 | 
| Cow position: | chr6:4467169-4467740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 5 | 
| Conread position: | 84-406 | 
| Cow position: | chr6:16624378-16624704 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 208 | 
| Conread position: | 84-685 | 
| Cow position: | chr6:12534291-12534901 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 88 | 
| Conread position: | 84-685 | 
| Cow position: | chr6:20450528-20451140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 140 | 
| Conread position: | 84-685 | 
| Cow position: | chr6:58952560-58951944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 409 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 139 | 
| Conread position: | 85-494 | 
| Cow position: | chr6:25409412-25408991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 30, 126 | 
| Conread position: | 85-685 | 
| Cow position: | chr6:26772560-26771941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 623 | 
| Alignm identity: | 441 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 139 | 
| Conread position: | 87-487 | 
| Cow position: | chr6:28845560-28845164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 186, 90 | 
| Conread position: | 87-842 | 
| Cow position: | chr6:51876393-51877176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 801 | 
| Alignm identity: | 533 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 138 | 
| Conread position: | 88-767 | 
| Cow position: | chr6:12628467-12629171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 714 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 10 | 
| Conread position: | 89-684 | 
| Cow position: | chr6:15925024-15924416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 135 | 
| Conread position: | 93-434 | 
| Cow position: | chr6:52194399-52194050 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 130 | 
| Conread position: | 93-536 | 
| Cow position: | chr6:18986584-18987050 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 61, 135 | 
| Conread position: | 93-678 | 
| Cow position: | chr6:52696208-52696804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 607 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 130 | 
| Conread position: | 99-671 | 
| Cow position: | chr6:1819223-1818634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 434 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 126 | 
| Conread position: | 103-456 | 
| Cow position: | chr6:24624814-24624455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 114 | 
| Conread position: | 104-686 | 
| Cow position: | chr6:55473903-55474487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 601 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 117 | 
| Conread position: | 106-685 | 
| Cow position: | chr6:41407990-41408585 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 19 | 
| Conread position: | 111-494 | 
| Cow position: | chr6:34018000-34018397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 113 | 
| Conread position: | 111-625 | 
| Cow position: | chr6:43778113-43778639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 533 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 47 | 
| Conread position: | 118-685 | 
| Cow position: | chr6:45936891-45937471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 591 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 106 | 
| Conread position: | 124-774 | 
| Cow position: | chr6:3894042-3893358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 689 | 
| Alignm identity: | 476 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 105 | 
| Conread position: | 125-373 | 
| Cow position: | chr6:23000743-23001000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 22, 99 | 
| Conread position: | 125-418 | 
| Cow position: | chr6:47024234-47024532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 28, 89 | 
| Conread position: | 125-671 | 
| Cow position: | chr6:6159259-6159823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 414 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 99 | 
| Conread position: | 125-771 | 
| Cow position: | chr6:4904372-4903717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 98 | 
| Conread position: | 126-685 | 
| Cow position: | chr6:34844110-34843533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 582 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 98 | 
| Conread position: | 127-595 | 
| Cow position: | chr6:61179611-61179142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 97 | 
| Conread position: | 134-640 | 
| Cow position: | chr6:3685567-3686086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 52 | 
| Conread position: | 136-685 | 
| Cow position: | chr6:3927759-3928325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 576 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 8 | 
| Conread position: | 147-492 | 
| Cow position: | chr6:21711186-21711543 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 75 | 
| Conread position: | 156-406 | 
| Cow position: | chr6:16674372-16674629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 6.00036e-42 | 
| Alignm gaps (pig, cow): | 26, 65 | 
| Conread position: | 159-271 | 
| Cow position: | chr6:47380101-47380212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 114 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 27, 38 | 
| Conread position: | 162-425 | 
| Cow position: | chr6:18963961-18963693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 58 | 
| Conread position: | 162-684 | 
| Cow position: | chr6:3015508-3016023 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 58 | 
| Conread position: | 163-617 | 
| Cow position: | chr6:57472597-57473053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 57 | 
| Conread position: | 163-685 | 
| Cow position: | chr6:30270260-30269723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 541 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 57 | 
| Conread position: | 164-636 | 
| Cow position: | chr6:22679499-22679987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 491 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 56 | 
| Conread position: | 164-684 | 
| Cow position: | chr6:2367589-2367082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 65 | 
| Conread position: | 170-441 | 
| Cow position: | chr6:1106199-1105919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 12, 50 | 
| Conread position: | 170-492 | 
| Cow position: | chr6:64425145-64425469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 50 | 
| Conread position: | 171-686 | 
| Cow position: | chr6:6474786-6474262 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 52 | 
| Conread position: | 172-685 | 
| Cow position: | chr6:2543371-2543915 (view UCSC Genome Browser custom track) | 
| Alignm length: | 553 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 22 | 
| Conread position: | 173-595 | 
| Cow position: | chr6:66277088-66277532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 23 | 
| Conread position: | 181-685 | 
| Cow position: | chr6:66189138-66188620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 38 | 
| Conread position: | 182-671 | 
| Cow position: | chr6:11354500-11354012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 37 | 
| Conread position: | 184-661 | 
| Cow position: | chr6:39359525-39359042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 504 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 16 | 
| Conread position: | 184-669 | 
| Cow position: | chr6:6120314-6119821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 128, 35 | 
| Conread position: | 186-684 | 
| Cow position: | chr6:53462485-53461975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 128, 36 | 
| Conread position: | 187-463 | 
| Cow position: | chr6:26527476-26527194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 112, 31 | 
| Conread position: | 187-617 | 
| Cow position: | chr6:1275320-1274877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 32 | 
| Conread position: | 187-663 | 
| Cow position: | chr6:12351497-12351991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 497 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 32 | 
| Conread position: | 187-685 | 
| Cow position: | chr6:43087924-43087416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 32 | 
| Conread position: | 189-385 | 
| Cow position: | chr6:41264710-41264911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 125, 30 | 
| Conread position: | 190-302 | 
| Cow position: | chr6:40551442-40551331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 113 | 
| Alignm identity: | 90 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 190-656 | 
| Cow position: | chr6:27761376-27761854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 29 | 
| Conread position: | 190-685 | 
| Cow position: | chr6:17049042-17049553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 29 | 
| Conread position: | 190-685 | 
| Cow position: | chr6:26325528-26325019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 29 | 
| Conread position: | 190-685 | 
| Cow position: | chr6:28185659-28185139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 29 | 
| Conread position: | 190-685 | 
| Cow position: | chr6:33490383-33489874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 29 | 
| Conread position: | 190-685 | 
| Cow position: | chr6:36230855-36230346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 29 | 
| Conread position: | 192-685 | 
| Cow position: | chr6:44147275-44146767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 513 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 27 | 
| Conread position: | 193-521 | 
| Cow position: | chr6:10694137-10694462 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 26 | 
| Conread position: | 194-685 | 
| Cow position: | chr6:31913500-31912995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 25 | 
| Conread position: | 198-474 | 
| Cow position: | chr6:22667645-22667373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 119, 21 | 
| Conread position: | 200-419 | 
| Cow position: | chr6:65895378-65895157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 8e-24 | 
| Alignm gaps (pig, cow): | 83, 19 | 
| Conread position: | 205-624 | 
| Cow position: | chr6:14065133-14065564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 109, 158 | 
| Conread position: | 215-423 | 
| Cow position: | chr6:705564-705775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 4e-38 | 
| Alignm gaps (pig, cow): | 92, 148 | 
| Conread position: | 215-511 | 
| Cow position: | chr6:22931180-22930885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 20, 142 | 
| Conread position: | 215-670 | 
| Cow position: | chr6:1888740-1888273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 147 | 
| Conread position: | 215-670 | 
| Cow position: | chr6:10651090-10650628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 78 | 
| Conread position: | 215-685 | 
| Cow position: | chr6:34074556-34075048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 27 | 
| Conread position: | 215-685 | 
| Cow position: | chr6:45975204-45975679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 154 | 
| Conread position: | 216-685 | 
| Cow position: | chr6:38989116-38988632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 19, 126 | 
| Conread position: | 219-488 | 
| Cow position: | chr6:59504167-59504427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 93, 40 | 
| Conread position: | 219-685 | 
| Cow position: | chr6:50486075-50485604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 146 | 
| Conread position: | 221-441 | 
| Cow position: | chr6:47573483-47573709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 0 | 
| Conread position: | 222-625 | 
| Cow position: | chr6:55385971-55386379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 108 | 
| Conread position: | 223-435 | 
| Cow position: | chr6:40759153-40759365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 93, 60 | 
| Conread position: | 223-448 | 
| Cow position: | chr6:49645435-49645659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 0 | 
| Conread position: | 228-685 | 
| Cow position: | chr6:16418972-16418502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 38 | 
| Conread position: | 230-774 | 
| Cow position: | chr6:15784262-15783709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 565 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 30 | 
| Conread position: | 231-685 | 
| Cow position: | chr6:27172542-27173009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 9 | 
| Conread position: | 231-685 | 
| Cow position: | chr6:35417230-35416792 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 230, 62 | 
| Conread position: | 231-685 | 
| Cow position: | chr6:39847626-39848098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 130 | 
| Conread position: | 232-684 | 
| Cow position: | chr6:11829914-11829453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 234, 85 | 
| Conread position: | 233-686 | 
| Cow position: | chr6:365604-366066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 131 | 
| Conread position: | 245-684 | 
| Cow position: | chr6:20553516-20553062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 119 | 
| Conread position: | 257-543 | 
| Cow position: | chr6:6205212-6205507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 52, 83 | 
| Conread position: | 257-685 | 
| Cow position: | chr6:11289718-11289286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 30 | 
| Conread position: | 261-490 | 
| Cow position: | chr6:14760008-14759772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 53, 22 | 
| Conread position: | 261-685 | 
| Cow position: | chr6:11168247-11168687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 116 | 
| Conread position: | 261-686 | 
| Cow position: | chr6:47380419-47380847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 103 | 
| Conread position: | 264-678 | 
| Cow position: | chr6:65049916-65049493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 82 | 
| Conread position: | 276-684 | 
| Cow position: | chr6:28475816-28476250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 10 | 
| Conread position: | 276-687 | 
| Cow position: | chr6:25217713-25218136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 88 | 
| Conread position: | 282-783 | 
| Cow position: | chr6:52249738-52249224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 194 | 
| Conread position: | 283-562 | 
| Cow position: | chr6:66838893-66839190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 33, 69 | 
| Conread position: | 283-685 | 
| Cow position: | chr6:45724382-45723965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 81 | 
| Conread position: | 287-648 | 
| Cow position: | chr6:1734949-1735309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 29, 74 | 
| Conread position: | 287-685 | 
| Cow position: | chr6:3119776-3119363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 7.00649e-44 | 
| Alignm gaps (pig, cow): | 42, 122 | 
| Conread position: | 294-668 | 
| Cow position: | chr6:7816350-7816732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 104, 60 | 
| Conread position: | 300-546 | 
| Cow position: | chr6:38672022-38672269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 194, 14 | 
| Conread position: | 304-685 | 
| Cow position: | chr6:67553022-67553412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 226 | 
| Conread position: | 304-686 | 
| Cow position: | chr6:35883362-35883753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 54 | 
| Conread position: | 308-687 | 
| Cow position: | chr6:65875487-65875102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 50 | 
| Conread position: | 310-676 | 
| Cow position: | chr6:52899747-52900117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 48 | 
| Conread position: | 313-492 | 
| Cow position: | chr6:23880553-23880372 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 163, 45 | 
| Conread position: | 313-574 | 
| Cow position: | chr6:10680678-10680947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 151, 8 | 
| Conread position: | 313-598 | 
| Cow position: | chr6:1402729-1402435 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 149, 45 | 
| Conread position: | 313-598 | 
| Cow position: | chr6:1407317-1407023 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 149, 45 | 
| Conread position: | 313-663 | 
| Cow position: | chr6:49165800-49165443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 45 | 
| Conread position: | 313-680 | 
| Cow position: | chr6:11193792-11193412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 2.8026e-45 | 
| Alignm gaps (pig, cow): | 16, 51 | 
| Conread position: | 313-684 | 
| Cow position: | chr6:53543679-53543304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 45 | 
| Conread position: | 313-685 | 
| Cow position: | chr6:888356-888737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 45 | 
| Conread position: | 313-685 | 
| Cow position: | chr6:14851947-14851566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 149 | 
| Conread position: | 313-685 | 
| Cow position: | chr6:15276440-15276060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 45 | 
| Conread position: | 313-685 | 
| Cow position: | chr6:38932455-38932074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 45 | 
| Conread position: | 313-685 | 
| Cow position: | chr6:40550899-40550520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 45 | 
| Conread position: | 313-685 | 
| Cow position: | chr6:49826453-49826072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 45 | 
| Conread position: | 313-779 | 
| Cow position: | chr6:14143832-14144308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 161, 45 | 
| Conread position: | 314-442 | 
| Cow position: | chr6:8634648-8634520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 314-578 | 
| Cow position: | chr6:9586865-9587139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2.8026e-45 | 
| Alignm gaps (pig, cow): | 148, 44 | 
| Conread position: | 315-685 | 
| Cow position: | chr6:61829030-61829409 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 43 | 
| Conread position: | 317-620 | 
| Cow position: | chr6:8279957-8279650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 94, 41 | 
| Conread position: | 317-684 | 
| Cow position: | chr6:14147007-14147378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 3e-35 | 
| Alignm gaps (pig, cow): | 145, 32 | 
| Conread position: | 324-685 | 
| Cow position: | chr6:14950856-14950472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 223 | 
| Conread position: | 324-685 | 
| Cow position: | chr6:18520272-18519902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 34 | 
| Conread position: | 324-685 | 
| Cow position: | chr6:45480266-45479908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 34 | 
| Conread position: | 324-685 | 
| Cow position: | chr6:46947629-46947998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 34 | 
| Conread position: | 324-685 | 
| Cow position: | chr6:50121117-50120746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 39 | 
| Conread position: | 324-685 | 
| Cow position: | chr6:55592866-55593250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 34 | 
| Conread position: | 324-686 | 
| Cow position: | chr6:52301549-52301924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 8, 0 | 
| Conread position: | 330-552 | 
| Cow position: | chr6:68567724-68567499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 88, 33 | 
| Conread position: | 330-685 | 
| Cow position: | chr6:57181636-57181998 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 28 | 
| Conread position: | 333-668 | 
| Cow position: | chr6:530061-529725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 25 | 
| Conread position: | 334-685 | 
| Cow position: | chr6:1380635-1380279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 8e-34 | 
| Alignm gaps (pig, cow): | 5, 25 | 
| Conread position: | 334-685 | 
| Cow position: | chr6:60332163-60332523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 24 | 
| Conread position: | 335-682 | 
| Cow position: | chr6:44509887-44510236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 23 | 
| Conread position: | 335-685 | 
| Cow position: | chr6:25358049-25357681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 110, 28 | 
| Conread position: | 336-475 | 
| Cow position: | chr6:42135946-42135807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 126, 22 | 
| Conread position: | 338-685 | 
| Cow position: | chr6:42615923-42616277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 20 | 
| Conread position: | 339-685 | 
| Cow position: | chr6:58605355-58605711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 337 | 
| Conread position: | 339-687 | 
| Cow position: | chr6:24632419-24632068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 19 | 
| Conread position: | 340-456 | 
| Cow position: | chr6:38274417-38274533 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 340-490 | 
| Cow position: | chr6:31978395-31978549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 133, 18 | 
| Conread position: | 340-685 | 
| Cow position: | chr6:6556787-6557141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 18 | 
| Conread position: | 340-810 | 
| Cow position: | chr6:41414516-41414024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 18 | 
| Conread position: | 341-685 | 
| Cow position: | chr6:9234339-9234691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 17 | 
| Conread position: | 345-588 | 
| Cow position: | chr6:13315482-13315229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 117, 18 | 
| Conread position: | 346-685 | 
| Cow position: | chr6:22044176-22043828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 12 | 
| Conread position: | 354-625 | 
| Cow position: | chr6:1262721-1263003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 0 | 
| Conread position: | 354-686 | 
| Cow position: | chr6:30317103-30316760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 7, 34 | 
| Conread position: | 358-671 | 
| Cow position: | chr6:17927267-17927589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 38 | 
| Conread position: | 359-685 | 
| Cow position: | chr6:6182862-6182528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 26 | 
| Conread position: | 359-685 | 
| Cow position: | chr6:30077438-30077104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 108, 103 | 
| Conread position: | 360-685 | 
| Cow position: | chr6:58030625-58030957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 114, 290 | 
| Conread position: | 369-685 | 
| Cow position: | chr6:1498056-1498378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 22 | 
| Conread position: | 377-685 | 
| Cow position: | chr6:43049333-43049015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 7.00649e-43 | 
| Alignm gaps (pig, cow): | 35, 26 | 
| Conread position: | 380-654 | 
| Cow position: | chr6:33508130-33508408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 82, 223 | 
| Conread position: | 380-685 | 
| Cow position: | chr6:57521039-57521355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 296 | 
| Conread position: | 383-685 | 
| Cow position: | chr6:32419821-32420130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 4.99997e-41 | 
| Alignm gaps (pig, cow): | 50, 94 | 
| Conread position: | 383-685 | 
| Cow position: | chr6:39897818-39898130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 294 | 
| Conread position: | 384-667 | 
| Cow position: | chr6:46218559-46218855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 89, 233 | 
| Conread position: | 387-668 | 
| Cow position: | chr6:15153983-15154273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 11, 16 | 
| Conread position: | 387-685 | 
| Cow position: | chr6:18571706-18571404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 88, 221 | 
| Conread position: | 391-684 | 
| Cow position: | chr6:55945550-55945247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 6, 201 | 
| Conread position: | 400-687 | 
| Cow position: | chr6:58880100-58880392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 62, 179 | 
| Conread position: | 404-685 | 
| Cow position: | chr6:2452737-2453026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 7.00649e-43 | 
| Alignm gaps (pig, cow): | 58, 126 | 
| Conread position: | 406-685 | 
| Cow position: | chr6:47024931-47025217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 5e-29 | 
| Alignm gaps (pig, cow): | 54, 11 | 
| Conread position: | 410-842 | 
| Cow position: | chr6:16699101-16699559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 266 | 
| Conread position: | 412-685 | 
| Cow position: | chr6:618313-618594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 62, 177 | 
| Conread position: | 414-685 | 
| Cow position: | chr6:705905-706178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 8.40779e-45 | 
| Alignm gaps (pig, cow): | 60, 90 | 
| Conread position: | 414-685 | 
| Cow position: | chr6:31940766-31941047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 61, 261 | 
| Conread position: | 414-685 | 
| Cow position: | chr6:65848463-65848190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 6.00036e-42 | 
| Alignm gaps (pig, cow): | 80, 144 | 
| Conread position: | 415-686 | 
| Cow position: | chr6:4388640-4388921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 58, 262 | 
| Conread position: | 416-686 | 
| Cow position: | chr6:8634399-8634124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 6.00036e-42 | 
| Alignm gaps (pig, cow): | 47, 234 | 
| Conread position: | 418-686 | 
| Cow position: | chr6:52245416-52245690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 33, 254 | 
| Conread position: | 421-658 | 
| Cow position: | chr6:56377988-56377737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 41, 191 | 
| Conread position: | 423-685 | 
| Cow position: | chr6:4680503-4680772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 39, 119 | 
| Conread position: | 426-685 | 
| Cow position: | chr6:67173466-67173735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 7.00649e-44 | 
| Alignm gaps (pig, cow): | 36, 251 | 
| Conread position: | 430-681 | 
| Cow position: | chr6:6595338-6595600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 43, 247 | 
| Conread position: | 431-682 | 
| Cow position: | chr6:41556257-41556508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 68, 40 | 
| Conread position: | 431-685 | 
| Cow position: | chr6:33983739-33983996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 42, 85 | 
| Conread position: | 431-730 | 
| Cow position: | chr6:18970511-18970199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 42 | 
| Conread position: | 434-684 | 
| Cow position: | chr6:27527040-27526784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 5e-40 | 
| Alignm gaps (pig, cow): | 40, 188 | 
| Conread position: | 434-685 | 
| Cow position: | chr6:58072579-58072836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 5e-40 | 
| Alignm gaps (pig, cow): | 39, 125 | 
| Conread position: | 438-675 | 
| Cow position: | chr6:5130524-5130283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 4e-27 | 
| Alignm gaps (pig, cow): | 61, 36 | 
| Conread position: | 442-684 | 
| Cow position: | chr6:1105216-1104972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 65, 33 | 
| Conread position: | 442-685 | 
| Cow position: | chr6:2089210-2089456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 9e-25 | 
| Alignm gaps (pig, cow): | 28, 131 | 
| Conread position: | 442-728 | 
| Cow position: | chr6:58016292-58016588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 52, 14 | 
| Conread position: | 442-801 | 
| Cow position: | chr6:47171015-47171378 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 57, 33 | 
| Conread position: | 443-686 | 
| Cow position: | chr6:16624707-16624957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 24, 231 | 
| Conread position: | 443-756 | 
| Cow position: | chr6:52978221-52977893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 61, 28 | 
| Conread position: | 444-686 | 
| Cow position: | chr6:49732733-49732974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 55, 9 | 
| Conread position: | 446-604 | 
| Cow position: | chr6:10680626-10680463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 52, 29 | 
| Conread position: | 446-685 | 
| Cow position: | chr6:12997351-12997601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 21, 232 | 
| Conread position: | 446-685 | 
| Cow position: | chr6:17112232-17111985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 32, 14 | 
| Conread position: | 446-685 | 
| Cow position: | chr6:17386456-17386703 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 32, 14 | 
| Conread position: | 471-663 | 
| Cow position: | chr6:25783470-25783275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 28, 89 | 
| Conread position: | 472-686 | 
| Cow position: | chr6:14897146-14897361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 27, 82 | 
| Conread position: | 475-637 | 
| Cow position: | chr6:42135954-42136122 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 475-665 | 
| Cow position: | chr6:67211623-67211426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 475-679 | 
| Cow position: | chr6:47573765-47573972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 27, 21 | 
| Conread position: | 475-683 | 
| Cow position: | chr6:50113655-50113862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 24, 10 | 
| Conread position: | 475-685 | 
| Cow position: | chr6:7112968-7112755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 25, 70 | 
| Conread position: | 475-685 | 
| Cow position: | chr6:11453903-11453688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 24, 195 | 
| Conread position: | 475-685 | 
| Cow position: | chr6:33809469-33809254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 15, 197 | 
| Conread position: | 475-685 | 
| Cow position: | chr6:38438571-38438786 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 7.00649e-43 | 
| Alignm gaps (pig, cow): | 24, 197 | 
| Conread position: | 475-685 | 
| Cow position: | chr6:55042158-55041943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 24, 197 | 
| Conread position: | 475-685 | 
| Cow position: | chr6:65892904-65892691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 24, 171 | 
| Conread position: | 475-685 | 
| Cow position: | chr6:67448961-67448746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 15, 197 | 
| Conread position: | 475-715 | 
| Cow position: | chr6:34030252-34030495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 21, 70 | 
| Conread position: | 477-684 | 
| Cow position: | chr6:29085408-29085196 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 22, 136 | 
| Conread position: | 477-685 | 
| Cow position: | chr6:1796594-1796807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 17, 195 | 
| Conread position: | 477-685 | 
| Cow position: | chr6:2186815-2186602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 22, 195 | 
| Conread position: | 477-685 | 
| Cow position: | chr6:7105562-7105348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 17, 196 | 
| Conread position: | 479-685 | 
| Cow position: | chr6:35600648-35600859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 5e-40 | 
| Alignm gaps (pig, cow): | 19, 192 | 
| Conread position: | 482-685 | 
| Cow position: | chr6:63177019-63177223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 18, 186 | 
| Conread position: | 484-685 | 
| Cow position: | chr6:47149991-47149790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 5e-30 | 
| Alignm gaps (pig, cow): | 17, 114 | 
| Conread position: | 490-684 | 
| Cow position: | chr6:843844-843649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 10, 176 | 
| Conread position: | 491-686 | 
| Cow position: | chr6:17556687-17556489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 8, 187 | 
| Conread position: | 499-685 | 
| Cow position: | chr6:452269-452083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 54, 168 | 
| Conread position: | 500-785 | 
| Cow position: | chr6:2618568-2618274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 158, 49 | 
| Conread position: | 502-683 | 
| Cow position: | chr6:22930653-22930478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 502-685 | 
| Cow position: | chr6:57856763-57856950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 21, 39 | 
| Conread position: | 505-683 | 
| Cow position: | chr6:64425792-64425970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 48, 161 | 
| Conread position: | 505-685 | 
| Cow position: | chr6:12926573-12926753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 48, 160 | 
| Conread position: | 505-686 | 
| Cow position: | chr6:34237087-34236910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 48, 15 | 
| Conread position: | 506-665 | 
| Cow position: | chr6:59710731-59710891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 506-685 | 
| Cow position: | chr6:6034796-6034617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 9e-35 | 
| Alignm gaps (pig, cow): | 47, 161 | 
| Conread position: | 506-685 | 
| Cow position: | chr6:21711705-21711886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 17, 162 | 
| Conread position: | 506-685 | 
| Cow position: | chr6:23568592-23568413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 7e-33 | 
| Alignm gaps (pig, cow): | 47, 161 | 
| Conread position: | 506-685 | 
| Cow position: | chr6:23880055-23879876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 6e-31 | 
| Alignm gaps (pig, cow): | 47, 161 | 
| Conread position: | 506-685 | 
| Cow position: | chr6:27534803-27534623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 32, 162 | 
| Conread position: | 506-685 | 
| Cow position: | chr6:40813366-40813545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 48, 161 | 
| Conread position: | 506-685 | 
| Cow position: | chr6:43039066-43038887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 42, 57 | 
| Conread position: | 507-685 | 
| Cow position: | chr6:49761465-49761650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-28 | 
| Alignm gaps (pig, cow): | 46, 167 | 
| Conread position: | 508-685 | 
| Cow position: | chr6:21857362-21857185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 6e-32 | 
| Alignm gaps (pig, cow): | 45, 157 | 
| Conread position: | 511-685 | 
| Cow position: | chr6:13850744-13850918 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 42, 156 | 
| Conread position: | 514-686 | 
| Cow position: | chr6:34018000-34017828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 39, 153 | 
| Conread position: | 524-642 | 
| Cow position: | chr6:13490982-13490863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 6e-21 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 524-685 | 
| Cow position: | chr6:32286572-32286734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 22, 143 | 
| Conread position: | 525-710 | 
| Cow position: | chr6:45736823-45736642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 26, 142 | 
| Conread position: | 532-685 | 
| Cow position: | chr6:46633146-46633299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 3e-25 | 
| Alignm gaps (pig, cow): | 24, 134 | 
| Conread position: | 535-685 | 
| Cow position: | chr6:18987173-18987320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 18, 74 | 
| Conread position: | 541-685 | 
| Cow position: | chr6:46764366-46764222 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 12, 126 | 
| Conread position: | 550-687 | 
| Cow position: | chr6:35704475-35704339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 116, 0 | 
| Conread position: | 556-685 | 
| Cow position: | chr6:1834047-1834175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 7e-22 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 732-842 | 
| Cow position: | chr6:50526814-50526932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 2e-22 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 734-840 | 
| Cow position: | chr6:27816278-27816170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 109 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 2e-21 | 
| Alignm gaps (pig, cow): | 69, 0 | 
Show alignments to all cow chromosomes.
