Cow genome map

Conread name: Ss1.1-Tra1-TCH01C070097.5

Conread position: 3-254
Cow position: chrX:35285972-35286223 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 70, 41

Conread position: 3-685
Cow position: chrX:36536405-36535712 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 59

Conread position: 3-686
Cow position: chrX:21591614-21592311 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 42

Conread position: 4-685
Cow position: chrX:20363816-20363119 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 31

Conread position: 4-685
Cow position: chrX:23039669-23038967 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 13

Conread position: 4-686
Cow position: chrX:4413203-4413896 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 223

Conread position: 8-685
Cow position: chrX:12997592-12996893 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 50

Conread position: 8-781
Cow position: chrX:24110276-24109479 (view UCSC Genome Browser custom track)
Alignm length: 818
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 70

Conread position: 11-422
Cow position: chrX:10301006-10300584 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 278
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 50, 364

Conread position: 13-306
Cow position: chrX:19401308-19401615 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 11, 216

Conread position: 14-451
Cow position: chrX:20133829-20133402 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 45

Conread position: 14-656
Cow position: chrX:18289749-18289096 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 412
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 48, 35

Conread position: 14-685
Cow position: chrX:26530285-26530990 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 380

Conread position: 17-684
Cow position: chrX:23217408-23218095 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 190

Conread position: 18-349
Cow position: chrX:6196697-6196364 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 223
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 41

Conread position: 18-685
Cow position: chrX:39697101-39697783 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 49

Conread position: 18-685
Cow position: chrX:39712879-39713568 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 127

Conread position: 19-349
Cow position: chrX:9067298-9067636 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 230
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 36, 190

Conread position: 19-381
Cow position: chrX:45417273-45416898 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 246
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 36, 140

Conread position: 19-439
Cow position: chrX:20741302-20740867 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 217

Conread position: 19-475
Cow position: chrX:13056093-13056588 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 328
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 36, 481

Conread position: 19-560
Cow position: chrX:25406417-25405859 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 105

Conread position: 19-605
Cow position: chrX:2486979-2487581 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 211

Conread position: 19-606
Cow position: chrX:36839047-36839633 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 136

Conread position: 19-610
Cow position: chrX:35384500-35383905 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 27

Conread position: 19-662
Cow position: chrX:39564957-39564292 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 50

Conread position: 19-670
Cow position: chrX:30164903-30164234 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 212

Conread position: 19-683
Cow position: chrX:35532185-35532872 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 199

Conread position: 19-685
Cow position: chrX:10529461-10528767 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 88

Conread position: 19-685
Cow position: chrX:12308437-12307745 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 212

Conread position: 19-685
Cow position: chrX:28556708-28557383 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 42

Conread position: 19-685
Cow position: chrX:43437578-43436882 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 212

Conread position: 19-686
Cow position: chrX:28606757-28606067 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 115

Conread position: 19-686
Cow position: chrX:30181599-30180906 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 213

Conread position: 19-781
Cow position: chrX:31727802-31728593 (view UCSC Genome Browser custom track)
Alignm length: 806
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 212

Conread position: 20-505
Cow position: chrX:22331444-22330944 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 211

Conread position: 21-281
Cow position: chrX:18246439-18246699 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 88

Conread position: 21-429
Cow position: chrX:6280465-6280067 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 269
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 20, 123

Conread position: 22-306
Cow position: chrX:38963386-38963090 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 7, 205

Conread position: 22-492
Cow position: chrX:5281453-5280965 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 215

Conread position: 22-615
Cow position: chrX:35023074-35023674 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 203

Conread position: 22-662
Cow position: chrX:21646950-21646284 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 207

Conread position: 22-683
Cow position: chrX:11743620-11744285 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 22

Conread position: 22-685
Cow position: chrX:3082807-3082117 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 38

Conread position: 22-685
Cow position: chrX:21342733-21343412 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 141

Conread position: 24-685
Cow position: chrX:6236515-6235831 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 333

Conread position: 25-507
Cow position: chrX:21766967-21767463 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 34

Conread position: 25-656
Cow position: chrX:29094980-29094329 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 34

Conread position: 25-685
Cow position: chrX:24468788-24468106 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 33

Conread position: 25-685
Cow position: chrX:26623470-26622791 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 205

Conread position: 25-685
Cow position: chrX:28587316-28587989 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 25-685
Cow position: chrX:29171446-29170764 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 25

Conread position: 25-685
Cow position: chrX:29911669-29912358 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 34

Conread position: 25-686
Cow position: chrX:9010668-9011349 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 34

Conread position: 25-686
Cow position: chrX:15622206-15621513 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 34

Conread position: 26-685
Cow position: chrX:22810228-22810906 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 195

Conread position: 26-686
Cow position: chrX:27304278-27304947 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 33

Conread position: 26-688
Cow position: chrX:164254-164925 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 122

Conread position: 29-617
Cow position: chrX:42008969-42009543 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 30

Conread position: 30-344
Cow position: chrX:29046785-29047103 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 43, 108

Conread position: 31-463
Cow position: chrX:503534-503097 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 190

Conread position: 33-260
Cow position: chrX:31512094-31512320 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 37, 50

Conread position: 35-313
Cow position: chrX:33774279-33773999 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 18, 99

Conread position: 35-359
Cow position: chrX:21000553-21000872 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 241
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 38, 113

Conread position: 35-458
Cow position: chrX:19212955-19212518 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 319

Conread position: 35-686
Cow position: chrX:24463091-24462420 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 171

Conread position: 35-686
Cow position: chrX:34008127-34008793 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 196

Conread position: 35-728
Cow position: chrX:35938677-35937999 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 105

Conread position: 40-270
Cow position: chrX:38589834-38589602 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 119, 38

Conread position: 46-771
Cow position: chrX:3406981-3406221 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 182

Conread position: 47-686
Cow position: chrX:41528450-41527782 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 32

Conread position: 49-314
Cow position: chrX:30976472-30976208 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 183
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 174

Conread position: 49-448
Cow position: chrX:26749908-26749498 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 18, 110

Conread position: 49-495
Cow position: chrX:26433751-26434203 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 96

Conread position: 49-654
Cow position: chrX:10867493-10866869 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 181

Conread position: 49-662
Cow position: chrX:29878167-29877540 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 180

Conread position: 49-665
Cow position: chrX:13667577-13666973 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 399
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 27, 79

Conread position: 49-685
Cow position: chrX:12185442-12186116 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 170

Conread position: 49-685
Cow position: chrX:13416066-13415425 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 99

Conread position: 49-728
Cow position: chrX:22818432-22819154 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 180

Conread position: 51-494
Cow position: chrX:2145334-2145779 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 52

Conread position: 51-665
Cow position: chrX:387499-388131 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 402
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 22, 8

Conread position: 54-480
Cow position: chrX:35027679-35028105 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 110

Conread position: 54-683
Cow position: chrX:16854985-16854350 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 45

Conread position: 54-685
Cow position: chrX:23021682-23022335 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 133

Conread position: 54-685
Cow position: chrX:30229749-30229096 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 175

Conread position: 54-767
Cow position: chrX:10413596-10412863 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 170

Conread position: 57-685
Cow position: chrX:24261003-24260357 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 170

Conread position: 59-380
Cow position: chrX:21643031-21642700 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 228
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 27, 42

Conread position: 59-426
Cow position: chrX:2226305-2226691 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 162

Conread position: 59-435
Cow position: chrX:3156148-3155759 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 147

Conread position: 59-446
Cow position: chrX:1787932-1788326 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 63

Conread position: 59-475
Cow position: chrX:17260499-17260072 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 271
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 169

Conread position: 59-478
Cow position: chrX:37872571-37872991 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 123

Conread position: 59-497
Cow position: chrX:731191-730742 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 78

Conread position: 59-497
Cow position: chrX:33815447-33815000 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 19

Conread position: 59-634
Cow position: chrX:6247829-6247249 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 63

Conread position: 59-635
Cow position: chrX:4995033-4995616 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 165

Conread position: 59-665
Cow position: chrX:2270997-2271617 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 382
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 15, 45

Conread position: 59-670
Cow position: chrX:16231470-16230872 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 391
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 88, 38

Conread position: 59-685
Cow position: chrX:14125876-14125227 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 169

Conread position: 61-684
Cow position: chrX:2879348-2878729 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 24

Conread position: 64-446
Cow position: chrX:37820520-37820904 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 257
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 87

Conread position: 65-654
Cow position: chrX:18221789-18222400 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 163

Conread position: 65-685
Cow position: chrX:29098800-29099436 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 102

Conread position: 65-685
Cow position: chrX:30090649-30090025 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 80

Conread position: 65-686
Cow position: chrX:29891484-29892105 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 62

Conread position: 67-685
Cow position: chrX:28519331-28518703 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 18

Conread position: 68-672
Cow position: chrX:16781665-16782287 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 143

Conread position: 69-287
Cow position: chrX:30425628-30425846 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 163
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 89, 49

Conread position: 69-306
Cow position: chrX:2047467-2047709 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 171
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 18, 156

Conread position: 69-447
Cow position: chrX:36691068-36690679 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 271
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 17, 50

Conread position: 69-681
Cow position: chrX:43074296-43074896 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 23

Conread position: 69-685
Cow position: chrX:4767078-4767713 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 160

Conread position: 69-685
Cow position: chrX:5247775-5248407 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 156

Conread position: 69-685
Cow position: chrX:16278038-16278673 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 43

Conread position: 69-685
Cow position: chrX:23394988-23395624 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 156

Conread position: 69-685
Cow position: chrX:24444687-24444038 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 156

Conread position: 69-685
Cow position: chrX:26341813-26341193 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 394
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 95

Conread position: 69-685
Cow position: chrX:27983970-27983334 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 32

Conread position: 69-685
Cow position: chrX:29765390-29766013 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 224

Conread position: 70-685
Cow position: chrX:2560565-2559943 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 155

Conread position: 72-268
Cow position: chrX:40642601-40642802 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 14, 149

Conread position: 72-294
Cow position: chrX:21492554-21492781 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 144

Conread position: 72-306
Cow position: chrX:1938990-1938753 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 61

Conread position: 72-306
Cow position: chrX:15177049-15176813 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 15, 38

Conread position: 72-306
Cow position: chrX:24322443-24322205 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 15, 27

Conread position: 72-314
Cow position: chrX:28929273-28929028 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 154

Conread position: 72-372
Cow position: chrX:35887476-35887787 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 11, 153

Conread position: 72-379
Cow position: chrX:13244043-13244360 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 15, 153

Conread position: 72-423
Cow position: chrX:16086010-16086368 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 247
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 15, 153

Conread position: 72-429
Cow position: chrX:21413982-21414346 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 79

Conread position: 72-432
Cow position: chrX:10386820-10387162 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 252
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 15, 64

Conread position: 72-452
Cow position: chrX:359905-360304 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 72-492
Cow position: chrX:17664813-17664377 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 153

Conread position: 72-527
Cow position: chrX:37814535-37815010 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-529
Cow position: chrX:9086099-9086571 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 140

Conread position: 72-530
Cow position: chrX:7810569-7810097 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 100

Conread position: 72-561
Cow position: chrX:12345323-12345836 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 151

Conread position: 72-562
Cow position: chrX:12312613-12312106 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 148

Conread position: 72-617
Cow position: chrX:3465977-3465411 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 41

Conread position: 72-618
Cow position: chrX:3418833-3418266 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 145

Conread position: 72-655
Cow position: chrX:15992700-15993293 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 145

Conread position: 72-671
Cow position: chrX:2814092-2813480 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 119

Conread position: 72-671
Cow position: chrX:13072061-13071442 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-671
Cow position: chrX:13092621-13092002 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-680
Cow position: chrX:15261232-15260604 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 158

Conread position: 72-684
Cow position: chrX:8481836-8482464 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:672607-671976 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:2381851-2382483 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 72-685
Cow position: chrX:2480243-2479611 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 152

Conread position: 72-685
Cow position: chrX:2578806-2579436 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:3360209-3360838 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 55

Conread position: 72-685
Cow position: chrX:4327300-4326663 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 40

Conread position: 72-685
Cow position: chrX:5298856-5298223 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:5321327-5320697 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:5333047-5332414 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:5360394-5361027 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:5865529-5866163 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:6580329-6580952 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 72-685
Cow position: chrX:7754291-7754923 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:11458425-11457797 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 49

Conread position: 72-685
Cow position: chrX:11977061-11976428 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 44

Conread position: 72-685
Cow position: chrX:12144483-12145116 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:12359275-12359905 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:13406900-13406269 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 152

Conread position: 72-685
Cow position: chrX:13929349-13928725 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:14461703-14462337 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 119

Conread position: 72-685
Cow position: chrX:14597241-14597863 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:14782961-14782328 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:15378248-15377646 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 388
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 70, 127

Conread position: 72-685
Cow position: chrX:15978567-15977936 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:16045356-16045990 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:16710356-16710973 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 28

Conread position: 72-685
Cow position: chrX:17053955-17054585 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:17890928-17891563 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 53

Conread position: 72-685
Cow position: chrX:18657420-18656788 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:19398161-19398795 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 154

Conread position: 72-685
Cow position: chrX:19474764-19474131 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:19608061-19608692 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:20357615-20356982 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:21388969-21389595 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 79

Conread position: 72-685
Cow position: chrX:22539652-22539016 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 299

Conread position: 72-685
Cow position: chrX:22565300-22564666 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:22611794-22612420 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 158

Conread position: 72-685
Cow position: chrX:23573421-23572800 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 70

Conread position: 72-685
Cow position: chrX:24483972-24483345 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 88

Conread position: 72-685
Cow position: chrX:24770470-24769839 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 151

Conread position: 72-685
Cow position: chrX:26231374-26230741 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:26274530-26275156 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:26442864-26442233 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 154

Conread position: 72-685
Cow position: chrX:27423883-27423254 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 40

Conread position: 72-685
Cow position: chrX:27591636-27591006 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 153

Conread position: 72-685
Cow position: chrX:28753952-28753319 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:30054082-30053451 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 151

Conread position: 72-685
Cow position: chrX:31979449-31978823 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 132

Conread position: 72-685
Cow position: chrX:32064783-32064151 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:32328599-32329226 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 29

Conread position: 72-685
Cow position: chrX:37851530-37852155 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-685
Cow position: chrX:42732266-42732889 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 151

Conread position: 72-686
Cow position: chrX:23133983-23134609 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 154

Conread position: 72-686
Cow position: chrX:33536983-33537602 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 150

Conread position: 72-687
Cow position: chrX:2009322-2008679 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 30

Conread position: 72-695
Cow position: chrX:2118005-2117371 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 153

Conread position: 72-695
Cow position: chrX:5640491-5639854 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 115

Conread position: 72-725
Cow position: chrX:19877197-19877891 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 26

Conread position: 72-774
Cow position: chrX:29941565-29942278 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 153

Conread position: 73-685
Cow position: chrX:31495125-31495754 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 152

Conread position: 74-291
Cow position: chrX:41153199-41153420 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 73, 150

Conread position: 74-353
Cow position: chrX:7119880-7120170 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 66, 152

Conread position: 74-429
Cow position: chrX:4479789-4480152 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 237
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 14, 146

Conread position: 74-492
Cow position: chrX:23453664-23453233 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 145

Conread position: 74-545
Cow position: chrX:20725361-20725847 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 35

Conread position: 74-595
Cow position: chrX:38149987-38150525 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 74-683
Cow position: chrX:23279415-23280041 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 37

Conread position: 74-685
Cow position: chrX:4906605-4905970 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 146

Conread position: 74-685
Cow position: chrX:7552418-7551784 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 154

Conread position: 74-685
Cow position: chrX:11462606-11461976 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 155

Conread position: 74-685
Cow position: chrX:15122774-15122145 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 74-685
Cow position: chrX:18951343-18950719 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 74-685
Cow position: chrX:21225868-21226496 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 74-685
Cow position: chrX:21581830-21582460 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 74-685
Cow position: chrX:23388160-23387516 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 74-685
Cow position: chrX:26756252-26755622 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 150

Conread position: 74-685
Cow position: chrX:27317618-27318248 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 145

Conread position: 74-685
Cow position: chrX:29916955-29916329 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 34

Conread position: 74-686
Cow position: chrX:9095034-9095661 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 100

Conread position: 74-686
Cow position: chrX:16702072-16702689 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 149

Conread position: 75-360
Cow position: chrX:29759038-29758742 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 12, 150

Conread position: 75-527
Cow position: chrX:22126386-22125938 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 144

Conread position: 75-546
Cow position: chrX:30167686-30167202 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 88

Conread position: 75-548
Cow position: chrX:9403307-9402824 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 322
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 12, 144

Conread position: 75-644
Cow position: chrX:17611057-17610474 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 133

Conread position: 75-685
Cow position: chrX:24412417-24413044 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 49

Conread position: 75-685
Cow position: chrX:27978434-27977815 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 149

Conread position: 75-686
Cow position: chrX:5278943-5278323 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 118

Conread position: 75-766
Cow position: chrX:33829432-33830154 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 153

Conread position: 76-685
Cow position: chrX:11146950-11146317 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 151

Conread position: 84-364
Cow position: chrX:12178598-12178306 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 63, 102

Conread position: 84-666
Cow position: chrX:30137457-30136867 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 27

Conread position: 85-625
Cow position: chrX:5549779-5550339 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 139

Conread position: 85-628
Cow position: chrX:34835607-34835075 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 357
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 61, 53

Conread position: 85-685
Cow position: chrX:30316589-30317183 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 380
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 375, 65

Conread position: 86-583
Cow position: chrX:13431535-13431019 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 134

Conread position: 86-603
Cow position: chrX:2606824-2607354 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 346
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 97, 47

Conread position: 86-685
Cow position: chrX:16804466-16803850 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 138

Conread position: 86-685
Cow position: chrX:16809413-16808797 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 138

Conread position: 87-426
Cow position: chrX:23236293-23236644 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 240
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 57, 14

Conread position: 87-685
Cow position: chrX:36194496-36195113 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 137

Conread position: 88-675
Cow position: chrX:3122433-3121872 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 393
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 15

Conread position: 89-685
Cow position: chrX:40694295-40693715 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 22

Conread position: 90-397
Cow position: chrX:27615077-27615392 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 24, 18

Conread position: 92-272
Cow position: chrX:20799968-20800154 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 134

Conread position: 93-648
Cow position: chrX:16067951-16067393 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 354
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 51

Conread position: 94-684
Cow position: chrX:16036101-16035492 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 134

Conread position: 97-675
Cow position: chrX:21628009-21627430 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 91

Conread position: 100-686
Cow position: chrX:5294931-5294329 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 126

Conread position: 103-686
Cow position: chrX:29791385-29790797 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 85

Conread position: 105-638
Cow position: chrX:37761131-37761678 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 105-774
Cow position: chrX:11074729-11074064 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 120

Conread position: 109-653
Cow position: chrX:13281889-13282453 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 116

Conread position: 111-459
Cow position: chrX:47215189-47214843 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 247
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 7

Conread position: 111-595
Cow position: chrX:9260779-9261278 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 63

Conread position: 111-625
Cow position: chrX:22837408-22837940 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 24

Conread position: 111-685
Cow position: chrX:22492461-22493051 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 113

Conread position: 111-685
Cow position: chrX:27595802-27595209 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 113

Conread position: 111-685
Cow position: chrX:31201268-31201858 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 110

Conread position: 113-685
Cow position: chrX:5426516-5427108 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 111

Conread position: 118-685
Cow position: chrX:21793022-21793607 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 106

Conread position: 119-685
Cow position: chrX:39561227-39560642 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 105

Conread position: 125-647
Cow position: chrX:39388015-39387488 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 345
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 22, 84

Conread position: 126-494
Cow position: chrX:14459966-14459584 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 98

Conread position: 126-685
Cow position: chrX:16023518-16024088 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 96

Conread position: 127-684
Cow position: chrX:26507697-26508250 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 96

Conread position: 127-685
Cow position: chrX:1549413-1549982 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 24

Conread position: 132-679
Cow position: chrX:25450780-25451348 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 93

Conread position: 134-685
Cow position: chrX:16360555-16359990 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 90

Conread position: 135-508
Cow position: chrX:13179406-13179010 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 46

Conread position: 153-306
Cow position: chrX:46295586-46295738 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 32

Conread position: 157-458
Cow position: chrX:3144286-3144581 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 54

Conread position: 158-686
Cow position: chrX:39765038-39765576 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 355
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 33, 65

Conread position: 162-684
Cow position: chrX:27070324-27070863 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 58

Conread position: 162-685
Cow position: chrX:4300461-4299923 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 58

Conread position: 162-685
Cow position: chrX:8640267-8640805 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 58

Conread position: 162-685
Cow position: chrX:38153228-38152704 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 58

Conread position: 163-685
Cow position: chrX:21832372-21832903 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 57

Conread position: 166-685
Cow position: chrX:4557821-4558337 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 54

Conread position: 171-639
Cow position: chrX:18460608-18460140 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 303
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 126, 11

Conread position: 173-684
Cow position: chrX:16525295-16525806 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 31

Conread position: 183-665
Cow position: chrX:21317949-21318450 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 36

Conread position: 183-685
Cow position: chrX:7484308-7484824 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 36

Conread position: 184-429
Cow position: chrX:34006725-34006488 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 115, 35

Conread position: 184-539
Cow position: chrX:18243850-18243480 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 35

Conread position: 184-684
Cow position: chrX:30166157-30165646 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 35

Conread position: 189-693
Cow position: chrX:6855166-6854687 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 30

Conread position: 189-728
Cow position: chrX:23222521-23221966 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 30

Conread position: 190-611
Cow position: chrX:21750992-21750565 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 29

Conread position: 190-683
Cow position: chrX:5354792-5354285 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 29

Conread position: 190-685
Cow position: chrX:3373343-3372835 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 29

Conread position: 190-685
Cow position: chrX:4623445-4622936 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 29

Conread position: 190-685
Cow position: chrX:24589220-24588717 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 29

Conread position: 190-685
Cow position: chrX:40828587-40828089 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 29

Conread position: 190-686
Cow position: chrX:24175437-24174931 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 29

Conread position: 193-684
Cow position: chrX:41848022-41847512 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 26

Conread position: 196-685
Cow position: chrX:11951239-11950753 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 23

Conread position: 196-685
Cow position: chrX:32145742-32145238 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 23

Conread position: 197-572
Cow position: chrX:34552907-34553293 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 22

Conread position: 197-685
Cow position: chrX:17782020-17782517 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 22

Conread position: 198-462
Cow position: chrX:47378672-47378411 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 173
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 107, 33

Conread position: 198-685
Cow position: chrX:4342268-4342768 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 21

Conread position: 198-685
Cow position: chrX:18489210-18488697 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 21

Conread position: 198-685
Cow position: chrX:22077823-22077323 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 20

Conread position: 199-417
Cow position: chrX:23984998-23985216 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 108, 20

Conread position: 199-685
Cow position: chrX:21892026-21892525 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 20

Conread position: 201-397
Cow position: chrX:37839472-37839672 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 18

Conread position: 201-685
Cow position: chrX:322425-322931 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 18

Conread position: 201-686
Cow position: chrX:41885669-41885159 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 489

Conread position: 205-461
Cow position: chrX:15142635-15142377 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 107, 14

Conread position: 205-685
Cow position: chrX:29225000-29225495 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 163

Conread position: 208-638
Cow position: chrX:22577922-22577505 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 299
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 108, 148

Conread position: 210-506
Cow position: chrX:28648354-28648047 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 106, 159

Conread position: 211-788
Cow position: chrX:37487475-37488084 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 68

Conread position: 214-506
Cow position: chrX:1528538-1528237 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 213
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 68, 87

Conread position: 214-605
Cow position: chrX:2501120-2501526 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 252
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 93, 150

Conread position: 215-685
Cow position: chrX:18462882-18463368 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 149

Conread position: 215-694
Cow position: chrX:5649851-5649373 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 143

Conread position: 218-662
Cow position: chrX:20733097-20733570 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 310
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 82, 211

Conread position: 223-426
Cow position: chrX:21253820-21254027 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 24, 17

Conread position: 226-674
Cow position: chrX:41880578-41880116 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 138

Conread position: 226-676
Cow position: chrX:13654043-13654504 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 283
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 63

Conread position: 226-686
Cow position: chrX:3581481-3581955 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 138

Conread position: 228-685
Cow position: chrX:7120153-7120624 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 69

Conread position: 231-661
Cow position: chrX:26446648-26447092 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 138

Conread position: 231-685
Cow position: chrX:24734218-24734681 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 108

Conread position: 244-728
Cow position: chrX:28625191-28624684 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 39

Conread position: 248-685
Cow position: chrX:26617696-26618141 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 116

Conread position: 250-685
Cow position: chrX:39547971-39548416 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 12

Conread position: 251-403
Cow position: chrX:18192967-18193124 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 56, 113

Conread position: 251-686
Cow position: chrX:35287014-35287445 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 97

Conread position: 257-685
Cow position: chrX:7096031-7096476 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 109

Conread position: 257-685
Cow position: chrX:27497406-27497847 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 107

Conread position: 257-685
Cow position: chrX:34094280-34094723 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 107

Conread position: 260-681
Cow position: chrX:38588333-38587901 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 104

Conread position: 260-685
Cow position: chrX:9170028-9169588 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 104

Conread position: 264-684
Cow position: chrX:20800370-20800805 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 104

Conread position: 264-685
Cow position: chrX:29880698-29880261 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 101

Conread position: 264-711
Cow position: chrX:45112388-45112850 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 100

Conread position: 267-685
Cow position: chrX:32129364-32129794 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 97

Conread position: 275-574
Cow position: chrX:4481291-4481606 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 88

Conread position: 277-685
Cow position: chrX:21767403-21767817 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 82

Conread position: 280-685
Cow position: chrX:9127652-9128072 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 84

Conread position: 280-685
Cow position: chrX:16041079-16040662 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 60

Conread position: 284-617
Cow position: chrX:24928396-24928745 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 80

Conread position: 284-685
Cow position: chrX:11409733-11409317 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 80

Conread position: 284-685
Cow position: chrX:30436017-30435601 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 80

Conread position: 284-685
Cow position: chrX:30965385-30964969 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 80

Conread position: 287-685
Cow position: chrX:30059502-30059904 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 70

Conread position: 301-507
Cow position: chrX:27339682-27339475 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 161, 9

Conread position: 309-685
Cow position: chrX:6657816-6658205 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 250
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 145, 46

Conread position: 311-685
Cow position: chrX:302757-303134 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 9

Conread position: 313-488
Cow position: chrX:31972485-31972310 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 149, 38

Conread position: 313-520
Cow position: chrX:45375091-45374889 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 186, 50

Conread position: 313-574
Cow position: chrX:46296004-46296273 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 147, 45

Conread position: 313-685
Cow position: chrX:8435562-8435182 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 45

Conread position: 313-685
Cow position: chrX:18024356-18023975 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 45

Conread position: 313-685
Cow position: chrX:24321991-24321611 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 45

Conread position: 313-685
Cow position: chrX:28879940-28879564 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 50

Conread position: 313-685
Cow position: chrX:30836023-30836404 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 45

Conread position: 313-685
Cow position: chrX:37080878-37080498 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 45

Conread position: 313-685
Cow position: chrX:41155948-41156329 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 45

Conread position: 313-685
Cow position: chrX:42223118-42222752 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 50

Conread position: 313-686
Cow position: chrX:7572027-7572409 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 45

Conread position: 313-774
Cow position: chrX:6044810-6044339 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 20

Conread position: 314-619
Cow position: chrX:1948792-1948477 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 40

Conread position: 314-684
Cow position: chrX:22579739-22579371 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 44

Conread position: 315-638
Cow position: chrX:21494074-21494409 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 43

Conread position: 315-685
Cow position: chrX:30286049-30286423 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 43

Conread position: 317-684
Cow position: chrX:2184881-2185242 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 259
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 145, 7

Conread position: 320-794
Cow position: chrX:34221423-34221903 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 43

Conread position: 321-637
Cow position: chrX:30135670-30135342 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 43

Conread position: 323-673
Cow position: chrX:24316462-24316820 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 40

Conread position: 324-432
Cow position: chrX:13321856-13321963 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 324-491
Cow position: chrX:36155053-36155222 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 139, 10

Conread position: 324-668
Cow position: chrX:28132751-28133101 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 243
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 91, 145

Conread position: 324-685
Cow position: chrX:5290037-5289667 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 34

Conread position: 324-685
Cow position: chrX:24293016-24292646 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 34

Conread position: 324-685
Cow position: chrX:29908554-29908185 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 12

Conread position: 324-685
Cow position: chrX:38962200-38961833 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 35

Conread position: 324-685
Cow position: chrX:40070956-40070586 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 33

Conread position: 325-685
Cow position: chrX:2047765-2048129 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 33

Conread position: 325-685
Cow position: chrX:27754073-27754445 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 33

Conread position: 326-695
Cow position: chrX:5070911-5070542 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 251
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 173, 27

Conread position: 328-685
Cow position: chrX:24345700-24346066 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 30

Conread position: 330-685
Cow position: chrX:25818160-25817800 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 6

Conread position: 334-599
Cow position: chrX:1977536-1977801 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 200
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 84, 24

Conread position: 338-591
Cow position: chrX:22119346-22119081 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 199
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 45, 25

Conread position: 341-670
Cow position: chrX:23269523-23269184 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 229
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 106, 21

Conread position: 342-685
Cow position: chrX:29082742-29083084 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 12

Conread position: 343-756
Cow position: chrX:2299561-2299988 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 15

Conread position: 345-592
Cow position: chrX:30426032-30426275 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 117, 13

Conread position: 346-574
Cow position: chrX:41305519-41305281 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 176
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 130, 12

Conread position: 347-685
Cow position: chrX:8104808-8104489 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 241
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 206, 11

Conread position: 347-685
Cow position: chrX:38231597-38231250 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 11

Conread position: 353-660
Cow position: chrX:9836587-9836908 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 230
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 102, 229

Conread position: 353-670
Cow position: chrX:9535218-9535545 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 233
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 121, 43

Conread position: 355-685
Cow position: chrX:15151975-15151646 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 237
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 138, 72

Conread position: 357-647
Cow position: chrX:16301412-16301114 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 89

Conread position: 359-683
Cow position: chrX:30073117-30073442 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 100, 228

Conread position: 360-671
Cow position: chrX:4134231-4133911 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 314

Conread position: 361-685
Cow position: chrX:34034058-34034383 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 224
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 112, 144

Conread position: 361-686
Cow position: chrX:29759384-29759708 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 226

Conread position: 367-672
Cow position: chrX:23342302-23341986 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 372-740
Cow position: chrX:21781029-21781404 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 244
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 16, 32

Conread position: 383-611
Cow position: chrX:15176432-15176193 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 76, 0

Conread position: 385-685
Cow position: chrX:5375569-5375260 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 205

Conread position: 385-685
Cow position: chrX:20741565-20741870 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 295

Conread position: 387-565
Cow position: chrX:6671665-6671850 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 75, 173

Conread position: 387-685
Cow position: chrX:27615522-27615831 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 290

Conread position: 387-685
Cow position: chrX:29287705-29288015 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 292

Conread position: 390-685
Cow position: chrX:30200275-30199975 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 124

Conread position: 393-685
Cow position: chrX:8400830-8400532 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 60, 16

Conread position: 396-685
Cow position: chrX:6279885-6279588 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 21, 87

Conread position: 398-685
Cow position: chrX:15590706-15590412 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 76, 36

Conread position: 399-685
Cow position: chrX:24446675-24446971 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 276

Conread position: 399-685
Cow position: chrX:41906010-41905713 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 63, 14

Conread position: 400-662
Cow position: chrX:30086555-30086284 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 87

Conread position: 402-664
Cow position: chrX:45042355-45042093 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 204
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 52, 75

Conread position: 403-685
Cow position: chrX:37839873-37840165 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 48, 279

Conread position: 403-686
Cow position: chrX:20952838-20953127 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 70, 109

Conread position: 406-685
Cow position: chrX:18193418-18193707 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 271

Conread position: 409-685
Cow position: chrX:15349482-15349196 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 268

Conread position: 411-683
Cow position: chrX:5365858-5365582 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 119

Conread position: 413-686
Cow position: chrX:20953272-20953551 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 16, 23

Conread position: 414-685
Cow position: chrX:5647368-5647087 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 261

Conread position: 414-685
Cow position: chrX:21661754-21662042 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 48, 272

Conread position: 414-685
Cow position: chrX:23985986-23986267 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 48, 205

Conread position: 415-685
Cow position: chrX:34760803-34761083 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 47, 262

Conread position: 415-704
Cow position: chrX:31964667-31964978 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 217
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 48, 66

Conread position: 416-772
Cow position: chrX:6656280-6655897 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 172

Conread position: 420-685
Cow position: chrX:20999530-20999250 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 40, 262

Conread position: 423-638
Cow position: chrX:13322177-13322407 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 164
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 423-685
Cow position: chrX:21414612-21414884 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 190
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 254

Conread position: 427-685
Cow position: chrX:864857-865125 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 47, 250

Conread position: 427-685
Cow position: chrX:9642679-9642415 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 198
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 35, 136

Conread position: 427-685
Cow position: chrX:22616622-22616354 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 35, 250

Conread position: 428-685
Cow position: chrX:44193685-44193419 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 194
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 31, 15

Conread position: 431-685
Cow position: chrX:14802066-14801802 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 190
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 31, 247

Conread position: 432-685
Cow position: chrX:13912188-13911925 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 30, 116

Conread position: 435-685
Cow position: chrX:6371937-6372197 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 27, 242

Conread position: 435-685
Cow position: chrX:16085901-16085641 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 27, 242

Conread position: 437-685
Cow position: chrX:9228136-9227885 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 62, 38

Conread position: 440-685
Cow position: chrX:30172944-30172689 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 30, 190

Conread position: 442-685
Cow position: chrX:20020342-20020598 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 33

Conread position: 442-685
Cow position: chrX:22869589-22869836 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 54, 33

Conread position: 442-685
Cow position: chrX:29849847-29849606 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 52, 33

Conread position: 446-668
Cow position: chrX:38228536-38228315 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 171
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 48, 29

Conread position: 449-642
Cow position: chrX:900855-900654 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 9, 100

Conread position: 455-685
Cow position: chrX:5335026-5334796 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 106
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 210

Conread position: 464-685
Cow position: chrX:14050402-14050176 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 166
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 30, 208

Conread position: 470-685
Cow position: chrX:27758506-27758726 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 200

Conread position: 473-685
Cow position: chrX:9899536-9899319 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 26, 199

Conread position: 475-684
Cow position: chrX:36691650-36691854 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 28, 167

Conread position: 475-685
Cow position: chrX:7276766-7276978 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 29, 55

Conread position: 475-685
Cow position: chrX:22809067-22809282 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 19, 197

Conread position: 475-685
Cow position: chrX:25847625-25847834 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 24, 128

Conread position: 475-685
Cow position: chrX:28633652-28633437 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 24, 197

Conread position: 477-685
Cow position: chrX:4406689-4406900 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 22, 98

Conread position: 477-685
Cow position: chrX:6201337-6201549 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 194

Conread position: 477-685
Cow position: chrX:11991339-11991134 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 22, 33

Conread position: 477-685
Cow position: chrX:34442624-34442411 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 17, 195

Conread position: 477-685
Cow position: chrX:38998651-38998858 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 22, 33

Conread position: 482-685
Cow position: chrX:16087310-16087106 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 18, 186

Conread position: 482-685
Cow position: chrX:27028944-27029146 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 18, 186

Conread position: 486-684
Cow position: chrX:16325712-16325512 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 151
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 107

Conread position: 488-685
Cow position: chrX:1617410-1617216 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 157
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 95

Conread position: 488-685
Cow position: chrX:6453517-6453714 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 12, 129

Conread position: 488-685
Cow position: chrX:37186701-37186899 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 12, 179

Conread position: 490-626
Cow position: chrX:29701641-29701503 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 500-684
Cow position: chrX:20503475-20503659 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 53, 108

Conread position: 500-685
Cow position: chrX:13178774-13178590 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 53, 151

Conread position: 500-685
Cow position: chrX:17890019-17889836 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 141
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 53, 138

Conread position: 504-685
Cow position: chrX:17664079-17663897 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 164

Conread position: 505-685
Cow position: chrX:15140693-15140514 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 138

Conread position: 505-685
Cow position: chrX:45374262-45374090 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 63

Conread position: 505-781
Cow position: chrX:45401165-45400894 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 200
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 48, 77

Conread position: 506-664
Cow position: chrX:21254057-21254216 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 506-671
Cow position: chrX:2103243-2103408 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 47, 161

Conread position: 506-685
Cow position: chrX:10445575-10445398 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 95

Conread position: 506-685
Cow position: chrX:16465145-16465324 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 47, 160

Conread position: 506-685
Cow position: chrX:21685459-21685636 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 47, 103

Conread position: 506-685
Cow position: chrX:23452609-23452430 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 47, 161

Conread position: 507-680
Cow position: chrX:29779875-29779703 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 49, 155

Conread position: 508-685
Cow position: chrX:721699-721876 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 46, 159

Conread position: 508-686
Cow position: chrX:6406196-6406373 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 150

Conread position: 509-842
Cow position: chrX:7177557-7177931 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 260
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 49, 32

Conread position: 510-685
Cow position: chrX:28647427-28647253 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 43, 53

Conread position: 511-648
Cow position: chrX:3804969-3804831 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 515-685
Cow position: chrX:10439061-10438888 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 36, 72

Conread position: 515-685
Cow position: chrX:36729231-36729401 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 150

Conread position: 516-648
Cow position: chrX:17791705-17791572 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 516-686
Cow position: chrX:29482889-29482718 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 26, 152

Conread position: 522-686
Cow position: chrX:24310242-24310081 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 31, 12

Conread position: 523-685
Cow position: chrX:32643341-32643503 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 30, 144

Conread position: 524-685
Cow position: chrX:30455760-30455599 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 29, 143

Conread position: 525-686
Cow position: chrX:11499917-11499756 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 140

Conread position: 526-685
Cow position: chrX:25289821-25289662 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 27, 141

Conread position: 526-685
Cow position: chrX:25292221-25292062 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 27, 141

Conread position: 526-685
Cow position: chrX:29930534-29930375 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 27, 141

Conread position: 531-665
Cow position: chrX:20674731-20674866 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 552-685
Cow position: chrX:8590465-8590597 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 552-685
Cow position: chrX:38852048-38852180 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 122, 0

Conread position: 553-685
Cow position: chrX:39556902-39556771 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 43, 122

Conread position: 554-685
Cow position: chrX:10059353-10059482 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 110, 0

Conread position: 556-685
Cow position: chrX:17994351-17994479 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 557-685
Cow position: chrX:33685021-33685148 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 109, 0

Conread position: 558-685
Cow position: chrX:37404338-37404212 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 559-685
Cow position: chrX:17290074-17290200 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 108

Conread position: 559-685
Cow position: chrX:39352719-39352593 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 107

Conread position: 566-686
Cow position: chrX:12310486-12310367 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 570-671
Cow position: chrX:10299991-10299891 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 732-842
Cow position: chrX:15151534-15151415 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 732-842
Cow position: chrX:29288139-29288253 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 732-842
Cow position: chrX:31261492-31261373 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 732-842
Cow position: chrX:41734050-41733930 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 102
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 733-839
Cow position: chrX:4767837-4767948 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.