Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
| Conread position: | 1-121 |
| Cow position: | |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-143 |
| Cow position: | |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-144 |
| Cow position: | |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-146 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 109, 79 |
| Conread position: | 1-148 |
| Cow position: | |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 50 |
| Conread position: | 1-149 |
| Cow position: | |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 114, 85 |
| Conread position: | 1-149 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-150 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 105, 36 |
| Conread position: | 1-150 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 115 |
| Conread position: | 1-150 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 118 |
| Conread position: | 1-150 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-150 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 1-151 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 40 |
| Conread position: | 1-151 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-151 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-153 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-153 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 58 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 117, 69 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 90, 97 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 117, 52 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 110, 52 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 109, 138 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 129 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 158 |
| Conread position: | 1-161 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-164 |
| Cow position: | |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 30 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 105, 45 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 55 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-168 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 131, 40 |
| Conread position: | 1-169 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 1-169 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 112, 74 |
| Conread position: | 1-169 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 115, 149 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 22, 113 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 120, 159 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 108, 155 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 110, 160 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 109, 137 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 126, 52 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 109, 76 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 117, 23 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 115, 24 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-172 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-172 |
| Cow position: | |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-172 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-173 |
| Cow position: | |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 51 |
| Conread position: | 1-178 |
| Cow position: | |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 153 |
| Conread position: | 1-190 |
| Cow position: | |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 182, 112 |
| Conread position: | 1-200 |
| Cow position: | |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-214 |
| Cow position: | |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 198, 106 |
| Conread position: | 2-149 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 2-170 |
| Cow position: | |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 116, 164 |
| Conread position: | 2-200 |
| Cow position: | |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 3-149 |
| Cow position: | |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 3-153 |
| Cow position: | |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 3-159 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 3-171 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 3-171 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 4-127 |
| Cow position: | |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-150 |
| Cow position: | |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 5-156 |
| Cow position: | |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 107, 41 |
| Conread position: | 5-156 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 5-170 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 7-161 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 116, 39 |
| Conread position: | 7-170 |
| Cow position: | |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 7-170 |
| Cow position: | |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 153 |
| Conread position: | 8-159 |
| Cow position: | |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 8-178 |
| Cow position: | |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 8-182 |
| Cow position: | |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 99, 73 |
| Conread position: | 10-166 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 50, 57 |
| Conread position: | 22-179 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 22-194 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 160, 104 |
| Conread position: | 27-157 |
| Cow position: | |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 39-160 |
| Cow position: | |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 45-159 |
| Cow position: | |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 45-170 |
| Cow position: | |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
Show alignments to all cow chromosomes.