Cow genome map

Conread name: Ss1.1-Tra1-TCH01D020047.5

Conread position: 1-121
Cow position: chr14:34449014-34448893 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 117, 0

Conread position: 1-143
Cow position: chr14:35018796-35018651 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 1-144
Cow position: chr14:3943593-3943452 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 112, 0

Conread position: 1-146
Cow position: chr14:15039656-15039508 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 109, 79

Conread position: 1-148
Cow position: chr14:21357515-21357665 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 103, 50

Conread position: 1-149
Cow position: chr14:18657650-18657498 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 114, 85

Conread position: 1-149
Cow position: chr14:40754290-40754138 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 118, 0

Conread position: 1-150
Cow position: chr14:803643-803794 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 105, 36

Conread position: 1-150
Cow position: chr14:1868842-1868690 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 72, 115

Conread position: 1-150
Cow position: chr14:10858390-10858540 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 74, 118

Conread position: 1-150
Cow position: chr14:34331369-34331218 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 112, 0

Conread position: 1-150
Cow position: chr14:42419316-42419167 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 39

Conread position: 1-151
Cow position: chr14:10697545-10697398 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 113, 40

Conread position: 1-151
Cow position: chr14:12520345-12520197 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 1-151
Cow position: chr14:12954428-12954274 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 1-153
Cow position: chr14:24981416-24981564 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 1-153
Cow position: chr14:41180757-41180599 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 13

Conread position: 1-156
Cow position: chr14:14316844-14316995 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 1-156
Cow position: chr14:20385028-20384872 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 117, 0

Conread position: 1-156
Cow position: chr14:36289841-36289686 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 58

Conread position: 1-156
Cow position: chr14:38144150-38143996 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 126
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 111, 0

Conread position: 1-159
Cow position: chr14:1796148-1796306 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 117, 69

Conread position: 1-159
Cow position: chr14:5630119-5630277 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-159
Cow position: chr14:6541767-6541608 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 90, 97

Conread position: 1-159
Cow position: chr14:12035367-12035523 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 117, 52

Conread position: 1-159
Cow position: chr14:18904649-18904494 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 110, 52

Conread position: 1-159
Cow position: chr14:19594180-19594014 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 1-159
Cow position: chr14:19618794-19618635 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 109, 138

Conread position: 1-159
Cow position: chr14:24387398-24387564 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 1-159
Cow position: chr14:26097736-26097576 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 1-159
Cow position: chr14:35420807-35420647 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 129

Conread position: 1-161
Cow position: chr14:4990959-4991121 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 158

Conread position: 1-161
Cow position: chr14:33247472-33247314 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 112, 0

Conread position: 1-164
Cow position: chr14:8541255-8541096 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 115, 0

Conread position: 1-166
Cow position: chr14:20712730-20712567 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 117, 30

Conread position: 1-166
Cow position: chr14:25385929-25385763 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 105, 45

Conread position: 1-166
Cow position: chr14:46654585-46654421 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 55

Conread position: 1-166
Cow position: chr14:47672924-47672764 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 0

Conread position: 1-168
Cow position: chr14:23478784-23478945 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 131, 40

Conread position: 1-169
Cow position: chr14:7695223-7695393 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 22, 54

Conread position: 1-169
Cow position: chr14:25779059-25779223 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 112, 74

Conread position: 1-169
Cow position: chr14:49767420-49767591 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 149

Conread position: 1-170
Cow position: chr14:1868426-1868259 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 106, 0

Conread position: 1-170
Cow position: chr14:1978116-1977946 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 22, 113

Conread position: 1-170
Cow position: chr14:4203141-4202969 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 120, 159

Conread position: 1-170
Cow position: chr14:18763476-18763319 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 1-170
Cow position: chr14:19863476-19863308 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 108, 155

Conread position: 1-170
Cow position: chr14:22941771-22941597 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 110, 160

Conread position: 1-170
Cow position: chr14:22966713-22966877 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 1-170
Cow position: chr14:25403978-25403813 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 109, 137

Conread position: 1-170
Cow position: chr14:27275120-27275286 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 45, 0

Conread position: 1-170
Cow position: chr14:28115230-28115061 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 27, 18

Conread position: 1-170
Cow position: chr14:33830259-33830421 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 1-170
Cow position: chr14:37447506-37447345 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 126, 52

Conread position: 1-170
Cow position: chr14:41127860-41128019 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 1-170
Cow position: chr14:42436982-42437150 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 105, 66

Conread position: 1-171
Cow position: chr14:7036400-7036227 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 1-171
Cow position: chr14:13809897-13810065 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 109, 76

Conread position: 1-171
Cow position: chr14:14622219-14622052 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 1-171
Cow position: chr14:16352306-16352471 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 117, 23

Conread position: 1-171
Cow position: chr14:19129463-19129637 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 108, 0

Conread position: 1-171
Cow position: chr14:20016750-20016577 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 15

Conread position: 1-171
Cow position: chr14:33309546-33309379 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 106, 0

Conread position: 1-171
Cow position: chr14:35503317-35503492 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 22, 99

Conread position: 1-171
Cow position: chr14:37422825-37422660 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 115, 24

Conread position: 1-171
Cow position: chr14:37884453-37884285 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 1-172
Cow position: chr14:4877271-4877103 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 1-172
Cow position: chr14:12244428-12244253 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 1-172
Cow position: chr14:41302873-41302704 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 118, 0

Conread position: 1-173
Cow position: chr14:4282549-4282380 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 105, 51

Conread position: 1-178
Cow position: chr14:21933386-21933206 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 114, 153

Conread position: 1-190
Cow position: chr14:46997996-46998182 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 182, 112

Conread position: 1-200
Cow position: chr14:36443061-36442858 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 118, 0

Conread position: 1-214
Cow position: chr14:12127453-12127242 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 198, 106

Conread position: 2-149
Cow position: chr14:50362752-50362901 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 117, 0

Conread position: 2-170
Cow position: chr14:18309349-18309172 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 116, 164

Conread position: 2-200
Cow position: chr14:16834280-16834482 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 114, 0

Conread position: 3-149
Cow position: chr14:25824654-25824795 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 110, 0

Conread position: 3-153
Cow position: chr14:37883957-37883804 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 115, 0

Conread position: 3-159
Cow position: chr14:29964979-29965133 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 3-171
Cow position: chr14:1859657-1859488 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 19

Conread position: 3-171
Cow position: chr14:48412923-48412752 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 110, 0

Conread position: 4-127
Cow position: chr14:24839741-24839864 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 4-150
Cow position: chr14:40269881-40269736 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 5-156
Cow position: chr14:29029790-29029942 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 107, 41

Conread position: 5-156
Cow position: chr14:46061903-46062060 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 5-170
Cow position: chr14:3564245-3564406 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 106, 0

Conread position: 7-161
Cow position: chr14:35381554-35381708 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 116, 39

Conread position: 7-170
Cow position: chr14:8786584-8786427 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 7-170
Cow position: chr14:17841329-17841164 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 153

Conread position: 8-159
Cow position: chr14:25001999-25002152 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 107, 0

Conread position: 8-178
Cow position: chr14:33338511-33338339 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 37, 33

Conread position: 8-182
Cow position: chr14:16340959-16341132 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 73

Conread position: 10-166
Cow position: chr14:40165390-40165546 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 50, 57

Conread position: 22-179
Cow position: chr14:40208876-40209036 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 22-194
Cow position: chr14:12081156-12080988 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 160, 104

Conread position: 27-157
Cow position: chr14:33568968-33569097 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 39-160
Cow position: chr14:7558446-7558319 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 45-159
Cow position: chr14:6226624-6226511 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 45-170
Cow position: chr14:33828163-33828285 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 0

Show alignments to all cow chromosomes.