Cow genome map

Conread name: Ss1.1-Tra1-TCH01D020047.5

Conread position: 1-118
Cow position:
Alignm length: 118
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-121
Cow position:
Alignm length: 121
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 1-125
Cow position:
Alignm length: 127
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 116, 0

Conread position: 1-132
Cow position:
Alignm length: 132
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 1-135
Cow position:
Alignm length: 137
Alignm identity: 106
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 117, 0

Conread position: 1-143
Cow position:
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 79, 51

Conread position: 1-143
Cow position:
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 1-144
Cow position:
Alignm length: 153
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 1-147
Cow position:
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 112, 108

Conread position: 1-147
Cow position:
Alignm length: 150
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 115, 96

Conread position: 1-150
Cow position:
Alignm length: 150
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 1-150
Cow position:
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 1-150
Cow position:
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 36

Conread position: 1-151
Cow position:
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 113, 127

Conread position: 1-151
Cow position:
Alignm length: 153
Alignm identity: 113
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 1-151
Cow position:
Alignm length: 151
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 1-152
Cow position:
Alignm length: 154
Alignm identity: 117
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 112, 146

Conread position: 1-152
Cow position:
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 126, 0

Conread position: 1-152
Cow position:
Alignm length: 155
Alignm identity: 115
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 120, 0

Conread position: 1-152
Cow position:
Alignm length: 152
Alignm identity: 116
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 140, 0

Conread position: 1-152
Cow position:
Alignm length: 152
Alignm identity: 112
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-153
Cow position:
Alignm length: 154
Alignm identity: 122
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 106, 0

Conread position: 1-153
Cow position:
Alignm length: 162
Alignm identity: 129
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 105, 0

Conread position: 1-154
Cow position:
Alignm length: 158
Alignm identity: 121
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 105, 31

Conread position: 1-156
Cow position:
Alignm length: 166
Alignm identity: 127
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 116, 0

Conread position: 1-156
Cow position:
Alignm length: 156
Alignm identity: 116
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 0

Conread position: 1-156
Cow position:
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 1-156
Cow position:
Alignm length: 163
Alignm identity: 120
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 1-156
Cow position:
Alignm length: 156
Alignm identity: 111
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-156
Cow position:
Alignm length: 158
Alignm identity: 122
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 106, 0

Conread position: 1-156
Cow position:
Alignm length: 156
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 40, 0

Conread position: 1-156
Cow position:
Alignm length: 157
Alignm identity: 123
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 114, 0

Conread position: 1-157
Cow position:
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 44, 83

Conread position: 1-159
Cow position:
Alignm length: 161
Alignm identity: 116
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 124
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 109, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 126, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 112, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 1-159
Cow position:
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 119, 66

Conread position: 1-159
Cow position:
Alignm length: 162
Alignm identity: 118
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 54, 143

Conread position: 1-159
Cow position:
Alignm length: 166
Alignm identity: 125
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 105, 51

Conread position: 1-159
Cow position:
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 112

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 1-159
Cow position:
Alignm length: 161
Alignm identity: 121
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 116, 0

Conread position: 1-160
Cow position:
Alignm length: 162
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 18

Conread position: 1-161
Cow position:
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 115, 0

Conread position: 1-161
Cow position:
Alignm length: 165
Alignm identity: 121
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 108, 48

Conread position: 1-161
Cow position:
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 16

Conread position: 1-165
Cow position:
Alignm length: 165
Alignm identity: 131
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 154, 0

Conread position: 1-166
Cow position:
Alignm length: 170
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 107, 0

Conread position: 1-166
Cow position:
Alignm length: 170
Alignm identity: 131
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 120, 76

Conread position: 1-167
Cow position:
Alignm length: 168
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 119, 94

Conread position: 1-168
Cow position:
Alignm length: 172
Alignm identity: 135
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 105, 126

Conread position: 1-169
Cow position:
Alignm length: 169
Alignm identity: 130
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 115, 0

Conread position: 1-169
Cow position:
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 117, 38

Conread position: 1-169
Cow position:
Alignm length: 177
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 108, 0

Conread position: 1-169
Cow position:
Alignm length: 169
Alignm identity: 129
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 125, 114

Conread position: 1-170
Cow position:
Alignm length: 177
Alignm identity: 138
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 111, 160

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 127
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 116, 109

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 40, 44

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 130
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 85, 36

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 132
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 104, 155

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 127
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 117, 128

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 126
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 116, 153

Conread position: 1-170
Cow position:
Alignm length: 174
Alignm identity: 126
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 109, 63

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 134
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 120, 151

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 108, 138

Conread position: 1-170
Cow position:
Alignm length: 173
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 112, 54

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 118, 108

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 1-170
Cow position:
Alignm length: 177
Alignm identity: 136
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 63, 116

Conread position: 1-170
Cow position:
Alignm length: 176
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 78, 55

Conread position: 1-170
Cow position:
Alignm length: 174
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 86

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 132
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 116, 0

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 128
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 93, 51

Conread position: 1-170
Cow position:
Alignm length: 174
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 105, 149

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 140
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 112, 156

Conread position: 1-171
Cow position:
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 40, 47

Conread position: 1-171
Cow position:
Alignm length: 171
Alignm identity: 131
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 115, 0

Conread position: 1-171
Cow position:
Alignm length: 175
Alignm identity: 133
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 77, 0

Conread position: 1-171
Cow position:
Alignm length: 174
Alignm identity: 127
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 75, 58

Conread position: 1-171
Cow position:
Alignm length: 174
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 45

Conread position: 1-171
Cow position:
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 120, 103

Conread position: 1-171
Cow position:
Alignm length: 171
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 1-171
Cow position:
Alignm length: 171
Alignm identity: 132
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 1-171
Cow position:
Alignm length: 171
Alignm identity: 125
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 1-171
Cow position:
Alignm length: 174
Alignm identity: 128
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 119, 0

Conread position: 1-171
Cow position:
Alignm length: 175
Alignm identity: 131
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 104, 145

Conread position: 1-171
Cow position:
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 113, 127

Conread position: 1-171
Cow position:
Alignm length: 172
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 127

Conread position: 1-172
Cow position:
Alignm length: 172
Alignm identity: 124
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 1-172
Cow position:
Alignm length: 172
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 2-115
Cow position:
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 54

Conread position: 2-150
Cow position:
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 2-153
Cow position:
Alignm length: 152
Alignm identity: 116
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 114, 0

Conread position: 2-156
Cow position:
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 2-156
Cow position:
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 117, 22

Conread position: 2-156
Cow position:
Alignm length: 156
Alignm identity: 113
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 2-159
Cow position:
Alignm length: 158
Alignm identity: 121
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 2-170
Cow position:
Alignm length: 169
Alignm identity: 126
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 111, 0

Conread position: 2-170
Cow position:
Alignm length: 172
Alignm identity: 126
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 107, 159

Conread position: 2-170
Cow position:
Alignm length: 169
Alignm identity: 125
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 2-170
Cow position:
Alignm length: 173
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 109

Conread position: 2-170
Cow position:
Alignm length: 170
Alignm identity: 132
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 116, 108

Conread position: 3-152
Cow position:
Alignm length: 151
Alignm identity: 113
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 106, 135

Conread position: 3-166
Cow position:
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 122, 43

Conread position: 3-169
Cow position:
Alignm length: 169
Alignm identity: 125
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 114, 0

Conread position: 3-170
Cow position:
Alignm length: 173
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 95

Conread position: 3-170
Cow position:
Alignm length: 170
Alignm identity: 135
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 154

Conread position: 3-170
Cow position:
Alignm length: 172
Alignm identity: 131
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 109, 38

Conread position: 3-170
Cow position:
Alignm length: 169
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 15, 148

Conread position: 3-170
Cow position:
Alignm length: 168
Alignm identity: 127
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 117, 0

Conread position: 4-171
Cow position:
Alignm length: 171
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 117, 136

Conread position: 5-159
Cow position:
Alignm length: 157
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 6-166
Cow position:
Alignm length: 164
Alignm identity: 128
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 114, 0

Conread position: 6-171
Cow position:
Alignm length: 170
Alignm identity: 124
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 8-160
Cow position:
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 96

Conread position: 9-160
Cow position:
Alignm length: 152
Alignm identity: 114
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 107, 0

Conread position: 9-170
Cow position:
Alignm length: 166
Alignm identity: 129
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 107, 44

Conread position: 10-148
Cow position:
Alignm length: 139
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 0

Conread position: 10-151
Cow position:
Alignm length: 142
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 69, 0

Conread position: 10-151
Cow position:
Alignm length: 142
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 18-170
Cow position:
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 51, 105

Conread position: 19-150
Cow position:
Alignm length: 133
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 22

Conread position: 24-159
Cow position:
Alignm length: 136
Alignm identity: 105
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 49-159
Cow position:
Alignm length: 112
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 69, 0

Show alignments to all cow chromosomes.