Cow genome map

Conread name: Ss1.1-Tra1-TCH01D020047.5

Conread position: 1-105
Cow position:
Alignm length: 105
Alignm identity: 85
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-115
Cow position:
Alignm length: 115
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-123
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 1-129
Cow position:
Alignm length: 133
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 1-130
Cow position:
Alignm length: 130
Alignm identity: 101
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 1-143
Cow position:
Alignm length: 147
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 1-144
Cow position:
Alignm length: 146
Alignm identity: 112
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 114, 0

Conread position: 1-147
Cow position:
Alignm length: 148
Alignm identity: 113
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 124, 0

Conread position: 1-147
Cow position:
Alignm length: 148
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 114, 33

Conread position: 1-148
Cow position:
Alignm length: 151
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 1-149
Cow position:
Alignm length: 149
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 0

Conread position: 1-150
Cow position:
Alignm length: 150
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 1-151
Cow position:
Alignm length: 151
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 126, 0

Conread position: 1-151
Cow position:
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 105, 0

Conread position: 1-151
Cow position:
Alignm length: 151
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 1-152
Cow position:
Alignm length: 155
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 1-152
Cow position:
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 59

Conread position: 1-153
Cow position:
Alignm length: 157
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 116, 50

Conread position: 1-153
Cow position:
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 1-153
Cow position:
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 1-156
Cow position:
Alignm length: 158
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 128

Conread position: 1-156
Cow position:
Alignm length: 157
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 112, 0

Conread position: 1-156
Cow position:
Alignm length: 160
Alignm identity: 127
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 89, 37

Conread position: 1-156
Cow position:
Alignm length: 159
Alignm identity: 124
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 122, 51

Conread position: 1-159
Cow position:
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 40

Conread position: 1-159
Cow position:
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 113, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 121
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 114, 0

Conread position: 1-159
Cow position:
Alignm length: 166
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 66, 0

Conread position: 1-159
Cow position:
Alignm length: 162
Alignm identity: 126
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 111, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 1-159
Cow position:
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 1-159
Cow position:
Alignm length: 163
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 0

Conread position: 1-159
Cow position:
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 111, 126

Conread position: 1-159
Cow position:
Alignm length: 166
Alignm identity: 128
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 118, 0

Conread position: 1-159
Cow position:
Alignm length: 162
Alignm identity: 122
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 114, 139

Conread position: 1-159
Cow position:
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 75, 0

Conread position: 1-160
Cow position:
Alignm length: 163
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 112, 50

Conread position: 1-160
Cow position:
Alignm length: 160
Alignm identity: 127
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 1-164
Cow position:
Alignm length: 169
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 1-166
Cow position:
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 116, 55

Conread position: 1-166
Cow position:
Alignm length: 168
Alignm identity: 125
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 106, 40

Conread position: 1-166
Cow position:
Alignm length: 174
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 1-166
Cow position:
Alignm length: 168
Alignm identity: 127
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 59, 110

Conread position: 1-166
Cow position:
Alignm length: 168
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 114, 59

Conread position: 1-166
Cow position:
Alignm length: 167
Alignm identity: 132
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 116, 74

Conread position: 1-166
Cow position:
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 81, 118

Conread position: 1-169
Cow position:
Alignm length: 172
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 128, 115

Conread position: 1-170
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 115, 54

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 117, 153

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 141, 115

Conread position: 1-170
Cow position:
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 59, 101

Conread position: 1-170
Cow position:
Alignm length: 173
Alignm identity: 126
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 114, 94

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 117, 127

Conread position: 1-170
Cow position:
Alignm length: 170
Alignm identity: 136
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 115, 0

Conread position: 1-170
Cow position:
Alignm length: 173
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 121, 48

Conread position: 1-170
Cow position:
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 107, 119

Conread position: 1-170
Cow position:
Alignm length: 173
Alignm identity: 135
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 115, 157

Conread position: 1-171
Cow position:
Alignm length: 177
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 1-171
Cow position:
Alignm length: 172
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 26

Conread position: 1-171
Cow position:
Alignm length: 177
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 105, 140

Conread position: 1-171
Cow position:
Alignm length: 180
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 1-171
Cow position:
Alignm length: 175
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 140

Conread position: 1-171
Cow position:
Alignm length: 172
Alignm identity: 129
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 108, 0

Conread position: 1-171
Cow position:
Alignm length: 178
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 103

Conread position: 1-171
Cow position:
Alignm length: 174
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 105, 66

Conread position: 1-171
Cow position:
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 109, 26

Conread position: 1-171
Cow position:
Alignm length: 172
Alignm identity: 126
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 113, 0

Conread position: 1-171
Cow position:
Alignm length: 171
Alignm identity: 129
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 117, 0

Conread position: 1-172
Cow position:
Alignm length: 175
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 111, 0

Conread position: 1-172
Cow position:
Alignm length: 174
Alignm identity: 130
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 114, 0

Conread position: 1-172
Cow position:
Alignm length: 174
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 108, 0

Conread position: 1-172
Cow position:
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 112, 0

Conread position: 1-179
Cow position:
Alignm length: 182
Alignm identity: 129
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 20

Conread position: 1-181
Cow position:
Alignm length: 187
Alignm identity: 135
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 99

Conread position: 1-183
Cow position:
Alignm length: 187
Alignm identity: 138
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 105, 158

Conread position: 1-188
Cow position:
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 107

Conread position: 1-189
Cow position:
Alignm length: 190
Alignm identity: 140
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 181, 109

Conread position: 2-115
Cow position:
Alignm length: 114
Alignm identity: 90
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 2-128
Cow position:
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 2-149
Cow position:
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 104, 57

Conread position: 2-166
Cow position:
Alignm length: 166
Alignm identity: 118
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 37, 112

Conread position: 2-169
Cow position:
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 111, 16

Conread position: 2-171
Cow position:
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 92, 133

Conread position: 2-171
Cow position:
Alignm length: 170
Alignm identity: 128
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 153, 0

Conread position: 2-171
Cow position:
Alignm length: 170
Alignm identity: 125
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 2-193
Cow position:
Alignm length: 194
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 156, 187

Conread position: 3-148
Cow position:
Alignm length: 150
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 117, 0

Conread position: 3-152
Cow position:
Alignm length: 150
Alignm identity: 120
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 113, 0

Conread position: 3-166
Cow position:
Alignm length: 168
Alignm identity: 126
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 38, 120

Conread position: 3-170
Cow position:
Alignm length: 171
Alignm identity: 128
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 113, 133

Conread position: 3-170
Cow position:
Alignm length: 172
Alignm identity: 131
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 107, 35

Conread position: 3-170
Cow position:
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 50

Conread position: 3-170
Cow position:
Alignm length: 168
Alignm identity: 129
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 110, 0

Conread position: 3-170
Cow position:
Alignm length: 168
Alignm identity: 133
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 110, 0

Conread position: 4-151
Cow position:
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 112, 0

Conread position: 4-169
Cow position:
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 5-116
Cow position:
Alignm length: 112
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 5-150
Cow position:
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 95, 90

Conread position: 6-148
Cow position:
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 7-170
Cow position:
Alignm length: 164
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 9-159
Cow position:
Alignm length: 151
Alignm identity: 119
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 9-160
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 103, 19

Conread position: 9-160
Cow position:
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 100, 0

Conread position: 9-172
Cow position:
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 110, 0

Conread position: 10-171
Cow position:
Alignm length: 163
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 106, 35

Conread position: 12-153
Cow position:
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 12-171
Cow position:
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 19-178
Cow position:
Alignm length: 162
Alignm identity: 125
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 94, 0

Conread position: 22-153
Cow position:
Alignm length: 132
Alignm identity: 105
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 26-170
Cow position:
Alignm length: 150
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 87, 130

Conread position: 33-169
Cow position:
Alignm length: 137
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.