Cow genome map

Conread name: Ss1.1-Tra1-TCH01D020047.5

Conread position: 1-114
Cow position: chr18:11754182-11754072 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 94, 0

Conread position: 1-116
Cow position: chr18:47125348-47125463 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-121
Cow position: chr18:14888343-14888223 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 106, 56

Conread position: 1-135
Cow position: chr18:2098692-2098826 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-142
Cow position: chr18:4624098-4624237 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 97, 74

Conread position: 1-144
Cow position: chr18:56301944-56301798 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 105, 47

Conread position: 1-148
Cow position: chr18:5078721-5078871 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 116, 0

Conread position: 1-148
Cow position: chr18:17005312-17005162 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 119, 0

Conread position: 1-148
Cow position: chr18:26998937-26998786 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 69, 96

Conread position: 1-148
Cow position: chr18:51643313-51643463 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 124
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 119, 0

Conread position: 1-149
Cow position: chr18:5701300-5701153 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 116, 59

Conread position: 1-149
Cow position: chr18:39623852-39623704 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-150
Cow position: chr18:21266558-21266406 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 105, 0

Conread position: 1-150
Cow position: chr18:39022310-39022162 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 10, 112

Conread position: 1-151
Cow position: chr18:29371919-29371770 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 0

Conread position: 1-152
Cow position: chr18:2619161-2619311 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 145, 0

Conread position: 1-152
Cow position: chr18:4495834-4495985 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-152
Cow position: chr18:24508179-24508338 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 1-153
Cow position: chr18:51392591-51392741 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 112, 54

Conread position: 1-155
Cow position: chr18:37023498-37023655 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 58, 66

Conread position: 1-156
Cow position: chr18:11322648-11322492 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 1-156
Cow position: chr18:16997306-16997149 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 117, 0

Conread position: 1-156
Cow position: chr18:24759604-24759759 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 125
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 1-156
Cow position: chr18:25282502-25282656 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 1-156
Cow position: chr18:30586173-30586326 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 118, 40

Conread position: 1-158
Cow position: chr18:5711601-5711755 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 66, 0

Conread position: 1-159
Cow position: chr18:4757981-4758146 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 106, 50

Conread position: 1-159
Cow position: chr18:19896399-19896561 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 113, 0

Conread position: 1-159
Cow position: chr18:20127053-20127213 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 94, 147

Conread position: 1-159
Cow position: chr18:22214540-22214375 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 118, 0

Conread position: 1-159
Cow position: chr18:29474795-29474634 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 108, 17

Conread position: 1-159
Cow position: chr18:50382300-50382149 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 40

Conread position: 1-159
Cow position: chr18:51691410-51691570 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 114, 0

Conread position: 1-159
Cow position: chr18:56044605-56044450 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 87, 54

Conread position: 1-159
Cow position: chr18:56166033-56165877 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 59, 0

Conread position: 1-160
Cow position: chr18:4673356-4673197 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 117, 54

Conread position: 1-166
Cow position: chr18:7956200-7956030 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 1-166
Cow position: chr18:19273044-19273215 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 106, 0

Conread position: 1-166
Cow position: chr18:19849705-19849869 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 65

Conread position: 1-166
Cow position: chr18:56159513-56159348 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 114, 19

Conread position: 1-169
Cow position: chr18:11377416-11377248 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 118, 34

Conread position: 1-169
Cow position: chr18:31125176-31125335 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 1-170
Cow position: chr18:3166437-3166615 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 44, 63

Conread position: 1-170
Cow position: chr18:4182136-4182304 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 116, 9

Conread position: 1-170
Cow position: chr18:10214138-10214311 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 33, 156

Conread position: 1-170
Cow position: chr18:10322858-10322691 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 116, 137

Conread position: 1-170
Cow position: chr18:13360106-13359949 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 74, 0

Conread position: 1-170
Cow position: chr18:18369309-18369478 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 109, 67

Conread position: 1-170
Cow position: chr18:19883585-19883414 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 138
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 43, 158

Conread position: 1-170
Cow position: chr18:20174077-20174244 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 117, 106

Conread position: 1-170
Cow position: chr18:22120833-22120996 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 119, 0

Conread position: 1-170
Cow position: chr18:22274789-22274951 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 1-170
Cow position: chr18:23162938-23162777 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 118, 51

Conread position: 1-170
Cow position: chr18:27109240-27109410 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 114, 157

Conread position: 1-170
Cow position: chr18:30341132-30341289 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 1-170
Cow position: chr18:43020352-43020513 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 1-170
Cow position: chr18:46048804-46048645 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 1-170
Cow position: chr18:47966875-47967039 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 119, 59

Conread position: 1-170
Cow position: chr18:51757145-51756980 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 18, 0

Conread position: 1-171
Cow position: chr18:5766461-5766294 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 113, 48

Conread position: 1-171
Cow position: chr18:7109182-7109010 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 112, 0

Conread position: 1-171
Cow position: chr18:12273710-12273539 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 108, 0

Conread position: 1-171
Cow position: chr18:18918908-18919075 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 21, 0

Conread position: 1-171
Cow position: chr18:29796376-29796543 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 98, 94

Conread position: 1-171
Cow position: chr18:38344858-38344687 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 75

Conread position: 1-171
Cow position: chr18:39434876-39434708 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 105, 9

Conread position: 1-172
Cow position: chr18:2863938-2864114 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 1-178
Cow position: chr18:36458983-36458808 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 58

Conread position: 1-178
Cow position: chr18:48828723-48828906 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 53

Conread position: 1-188
Cow position: chr18:248763-248949 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 106, 82

Conread position: 1-191
Cow position: chr18:40759259-40759070 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 115, 155

Conread position: 1-202
Cow position: chr18:12584787-12584995 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 101, 172

Conread position: 2-145
Cow position: chr18:7952689-7952545 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 117, 46

Conread position: 2-148
Cow position: chr18:5632319-5632170 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 120
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 105, 0

Conread position: 2-151
Cow position: chr18:39662830-39662681 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 2-152
Cow position: chr18:38793836-38793984 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 99, 20

Conread position: 2-157
Cow position: chr18:55692867-55692708 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 2-178
Cow position: chr18:4556118-4556291 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 3-152
Cow position: chr18:22143471-22143623 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 3-159
Cow position: chr18:3211928-3211766 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 113, 0

Conread position: 3-159
Cow position: chr18:21102726-21102878 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 65, 0

Conread position: 3-170
Cow position: chr18:43555474-43555640 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 115, 153

Conread position: 3-171
Cow position: chr18:33157867-33157700 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 53

Conread position: 4-153
Cow position: chr18:15025721-15025566 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 108, 44

Conread position: 5-143
Cow position: chr18:24977012-24977157 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 6-159
Cow position: chr18:51655995-51656150 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 109, 0

Conread position: 6-172
Cow position: chr18:43283709-43283877 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 7-147
Cow position: chr18:50974248-50974389 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 8-128
Cow position: chr18:27388630-27388507 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 9-159
Cow position: chr18:6609813-6609964 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 9-171
Cow position: chr18:22055830-22055998 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 22-159
Cow position: chr18:20175163-20175298 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 22-170
Cow position: chr18:51405875-51406024 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 87, 73

Conread position: 27-166
Cow position: chr18:47812496-47812356 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 91, 33

Conread position: 45-170
Cow position: chr18:2480664-2480542 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Show alignments to all cow chromosomes.