Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
| Conread position: | 1-114 |
| Cow position: | |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-116 |
| Cow position: | |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-121 |
| Cow position: | |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 106, 56 |
| Conread position: | 1-135 |
| Cow position: | |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-142 |
| Cow position: | |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 74 |
| Conread position: | 1-144 |
| Cow position: | |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 105, 47 |
| Conread position: | 1-148 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-148 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1-148 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 96 |
| Conread position: | 1-148 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1-149 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 116, 59 |
| Conread position: | 1-149 |
| Cow position: | |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-150 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-150 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 1-151 |
| Cow position: | |
| Alignm length: | 151 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-152 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 1-152 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-152 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-153 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 112, 54 |
| Conread position: | 1-155 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 58, 66 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-156 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 40 |
| Conread position: | 1-158 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 106, 50 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 94, 147 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 87, 54 |
| Conread position: | 1-159 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-160 |
| Cow position: | |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 117, 54 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 101, 65 |
| Conread position: | 1-166 |
| Cow position: | |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 114, 19 |
| Conread position: | 1-169 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 118, 34 |
| Conread position: | 1-169 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 116, 9 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 156 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 116, 137 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 109, 67 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 117, 106 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 118, 51 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 114, 157 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 119, 59 |
| Conread position: | 1-170 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 113, 48 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 98, 94 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 111, 75 |
| Conread position: | 1-171 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 1-172 |
| Cow position: | |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-178 |
| Cow position: | |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 58 |
| Conread position: | 1-178 |
| Cow position: | |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 1-188 |
| Cow position: | |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 82 |
| Conread position: | 1-191 |
| Cow position: | |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 115, 155 |
| Conread position: | 1-202 |
| Cow position: | |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 101, 172 |
| Conread position: | 2-145 |
| Cow position: | |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 117, 46 |
| Conread position: | 2-148 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 2-151 |
| Cow position: | |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-152 |
| Cow position: | |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 20 |
| Conread position: | 2-157 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 2-178 |
| Cow position: | |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 3-152 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 3-159 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 3-159 |
| Cow position: | |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 3-170 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 115, 153 |
| Conread position: | 3-171 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 106, 53 |
| Conread position: | 4-153 |
| Cow position: | |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 44 |
| Conread position: | 5-143 |
| Cow position: | |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 6-159 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 6-172 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 7-147 |
| Cow position: | |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 8-128 |
| Cow position: | |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 9-159 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 9-171 |
| Cow position: | |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 22-159 |
| Cow position: | |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 22-170 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 73 |
| Conread position: | 27-166 |
| Cow position: | |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 33 |
| Conread position: | 45-170 |
| Cow position: | |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
Show alignments to all cow chromosomes.