Cow genome map

Conread name: Ss1.1-Tra1-TCH01D020047.5

Conread position: 1-114
Cow position: chr23:7696647-7696533 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 1-115
Cow position: chr23:1936555-1936669 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-120
Cow position: chr23:3234694-3234813 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-132
Cow position: chr23:4972853-4972720 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 119, 40

Conread position: 1-142
Cow position: chr23:4877448-4877302 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 106, 0

Conread position: 1-142
Cow position: chr23:32309773-32309630 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 63, 129

Conread position: 1-143
Cow position: chr23:3244381-3244522 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 108, 0

Conread position: 1-145
Cow position: chr23:1655982-1655837 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 112, 0

Conread position: 1-148
Cow position: chr23:3191037-3191187 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 105, 0

Conread position: 1-149
Cow position: chr23:41348536-41348689 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 106, 0

Conread position: 1-150
Cow position: chr23:6994895-6995045 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 1-151
Cow position: chr23:8911550-8911400 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-151
Cow position: chr23:13520539-13520387 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 129

Conread position: 1-151
Cow position: chr23:28944981-28945128 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 1-152
Cow position: chr23:283305-283461 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 105, 0

Conread position: 1-152
Cow position: chr23:1254775-1254623 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 109
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 114, 0

Conread position: 1-152
Cow position: chr23:20388563-20388715 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 113, 0

Conread position: 1-153
Cow position: chr23:1397951-1398101 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 106, 0

Conread position: 1-153
Cow position: chr23:5436555-5436710 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 117, 0

Conread position: 1-153
Cow position: chr23:6224061-6223917 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 1-153
Cow position: chr23:26949284-26949134 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 1-153
Cow position: chr23:39775813-39775659 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 5

Conread position: 1-154
Cow position: chr23:39753202-39753050 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 115, 67

Conread position: 1-156
Cow position: chr23:5723625-5723476 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 116, 52

Conread position: 1-156
Cow position: chr23:12334297-12334138 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 114, 36

Conread position: 1-156
Cow position: chr23:14164307-14164469 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 1-156
Cow position: chr23:15287049-15287206 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 1-156
Cow position: chr23:33622062-33622221 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 128, 0

Conread position: 1-156
Cow position: chr23:38845687-38845537 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 59, 90

Conread position: 1-159
Cow position: chr23:4327613-4327761 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 105, 0

Conread position: 1-159
Cow position: chr23:9734496-9734343 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 1-159
Cow position: chr23:10416333-10416490 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 137

Conread position: 1-159
Cow position: chr23:16699954-16700110 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 103, 0

Conread position: 1-159
Cow position: chr23:23409820-23409668 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 40, 0

Conread position: 1-159
Cow position: chr23:24984082-24984239 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 1-159
Cow position: chr23:35247455-35247294 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 112, 0

Conread position: 1-159
Cow position: chr23:38455091-38455253 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 115, 0

Conread position: 1-164
Cow position: chr23:19370987-19371147 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 109, 0

Conread position: 1-166
Cow position: chr23:1742441-1742278 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 106, 37

Conread position: 1-166
Cow position: chr23:30951043-30950878 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 113

Conread position: 1-166
Cow position: chr23:39780842-39780677 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 112, 139

Conread position: 1-169
Cow position: chr23:2405989-2405816 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 1-169
Cow position: chr23:13555352-13555519 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 126, 28

Conread position: 1-169
Cow position: chr23:40648644-40648813 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 101

Conread position: 1-170
Cow position: chr23:306610-306438 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 159

Conread position: 1-170
Cow position: chr23:307543-307371 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 159

Conread position: 1-170
Cow position: chr23:3262410-3262576 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 1-170
Cow position: chr23:4528789-4528963 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 106, 0

Conread position: 1-170
Cow position: chr23:4726880-4726707 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 5

Conread position: 1-170
Cow position: chr23:12050444-12050280 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 1-170
Cow position: chr23:12091269-12091439 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 23, 130

Conread position: 1-170
Cow position: chr23:13599428-13599264 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 66, 0

Conread position: 1-170
Cow position: chr23:13946125-13945955 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 113, 43

Conread position: 1-170
Cow position: chr23:15709984-15710153 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 53, 119

Conread position: 1-170
Cow position: chr23:16582822-16582989 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 152, 0

Conread position: 1-170
Cow position: chr23:18402202-18402369 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 114, 131

Conread position: 1-170
Cow position: chr23:21336396-21336567 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 116, 158

Conread position: 1-170
Cow position: chr23:21446204-21446039 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 114, 51

Conread position: 1-170
Cow position: chr23:22804812-22804645 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 154, 0

Conread position: 1-170
Cow position: chr23:25864609-25864774 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 86

Conread position: 1-170
Cow position: chr23:33711848-33711681 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 152, 0

Conread position: 1-170
Cow position: chr23:36309508-36309340 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 106, 80

Conread position: 1-170
Cow position: chr23:37065937-37065762 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 109, 162

Conread position: 1-170
Cow position: chr23:39083539-39083367 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 1-170
Cow position: chr23:40790059-40789897 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 20

Conread position: 1-171
Cow position: chr23:1701259-1701087 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 118, 0

Conread position: 1-171
Cow position: chr23:4562973-4562802 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 117, 0

Conread position: 1-171
Cow position: chr23:6592620-6592783 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 118, 40

Conread position: 1-171
Cow position: chr23:11129321-11129149 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 105, 156

Conread position: 1-171
Cow position: chr23:21309324-21309494 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 39

Conread position: 1-171
Cow position: chr23:27544915-27544745 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 1-171
Cow position: chr23:34356728-34356560 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 87, 18

Conread position: 1-188
Cow position: chr23:5603197-5603381 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 116, 149

Conread position: 2-143
Cow position: chr23:26283809-26283669 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 111, 17

Conread position: 2-153
Cow position: chr23:38208812-38208660 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 114, 25

Conread position: 2-153
Cow position: chr23:38973934-38973782 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 114, 38

Conread position: 2-156
Cow position: chr23:1885086-1885240 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 2-170
Cow position: chr23:29069354-29069523 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 115, 154

Conread position: 2-171
Cow position: chr23:1767915-1767746 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 2-171
Cow position: chr23:19774855-19774690 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 3-159
Cow position: chr23:1923751-1923908 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 103, 92

Conread position: 3-171
Cow position: chr23:3244834-3244999 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 112, 15

Conread position: 3-171
Cow position: chr23:10553923-10554090 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 100, 108

Conread position: 4-159
Cow position: chr23:5745266-5745100 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 4-160
Cow position: chr23:40844735-40844580 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 4-170
Cow position: chr23:10829497-10829666 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 4-170
Cow position: chr23:16797720-16797890 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 155

Conread position: 4-171
Cow position: chr23:1647701-1647535 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 105, 26

Conread position: 5-170
Cow position: chr23:4329591-4329761 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 98, 157

Conread position: 10-170
Cow position: chr23:4968445-4968601 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 100, 0

Conread position: 14-159
Cow position: chr23:1921152-1921297 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 19-159
Cow position: chr23:24704354-24704210 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 88, 0

Conread position: 19-160
Cow position: chr23:417217-417078 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 0

Conread position: 21-170
Cow position: chr23:22396377-22396531 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 17

Conread position: 22-170
Cow position: chr23:26794846-26794995 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 24-171
Cow position: chr23:33570199-33570052 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 117, 92

Conread position: 27-151
Cow position: chr23:18415989-18416110 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 27-159
Cow position: chr23:3522812-3522679 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 88, 26

Conread position: 30-161
Cow position: chr23:7402760-7402628 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 106, 51

Conread position: 42-156
Cow position: chr23:39520402-39520518 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 0

Show alignments to all cow chromosomes.