Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
| Conread position: | 1-105 |
| Cow position: | chr24:34465445-34465549 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-145 |
| Cow position: | chr24:16118421-16118281 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-147 |
| Cow position: | chr24:3160892-3160749 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 99, 60 |
| Conread position: | 1-147 |
| Cow position: | chr24:32369854-32370004 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:2992820-2992965 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:32822710-32822860 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1-148 |
| Cow position: | chr24:44987314-44987465 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-150 |
| Cow position: | chr24:27290932-27290780 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-151 |
| Cow position: | chr24:352546-352695 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 34 |
| Conread position: | 1-152 |
| Cow position: | chr24:28289192-28289340 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-153 |
| Cow position: | chr24:24457189-24457341 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-153 |
| Cow position: | chr24:33944462-33944311 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-156 |
| Cow position: | chr24:24755508-24755348 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1-156 |
| Cow position: | chr24:34396118-34396269 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 1-156 |
| Cow position: | chr24:34742814-34742657 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-156 |
| Cow position: | chr24:39910972-39911132 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 1-156 |
| Cow position: | chr24:41068320-41068170 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-157 |
| Cow position: | chr24:7046689-7046844 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-157 |
| Cow position: | chr24:25165095-25164937 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:11840248-11840091 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:16895077-16895228 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:18970447-18970605 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 68, 115 |
| Conread position: | 1-159 |
| Cow position: | chr24:19769550-19769390 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:27418043-27418199 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 115, 26 |
| Conread position: | 1-159 |
| Cow position: | chr24:28721945-28721793 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:32071022-32070869 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-159 |
| Cow position: | chr24:32204734-32204892 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 116, 89 |
| Conread position: | 1-159 |
| Cow position: | chr24:43364419-43364262 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 39 |
| Conread position: | 1-160 |
| Cow position: | chr24:20801285-20801442 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 1-160 |
| Cow position: | chr24:28045820-28045652 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-162 |
| Cow position: | chr24:28600374-28600540 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-166 |
| Cow position: | chr24:17955384-17955546 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-166 |
| Cow position: | chr24:29171022-29170864 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-168 |
| Cow position: | chr24:37395150-37395314 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 55 |
| Conread position: | 1-168 |
| Cow position: | chr24:41405955-41405790 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 65, 112 |
| Conread position: | 1-169 |
| Cow position: | chr24:8886971-8886802 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 74, 121 |
| Conread position: | 1-169 |
| Cow position: | chr24:16089289-16089122 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 83, 123 |
| Conread position: | 1-169 |
| Cow position: | chr24:29679252-29679417 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-170 |
| Cow position: | chr24:3493945-3493779 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-170 |
| Cow position: | chr24:15508483-15508645 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 57 |
| Conread position: | 1-170 |
| Cow position: | chr24:16510038-16509864 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 157 |
| Conread position: | 1-170 |
| Cow position: | chr24:16645259-16645430 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 113, 157 |
| Conread position: | 1-170 |
| Cow position: | chr24:17752051-17752220 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 108, 156 |
| Conread position: | 1-170 |
| Cow position: | chr24:18741511-18741677 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-170 |
| Cow position: | chr24:30229534-30229362 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 1-170 |
| Cow position: | chr24:34008512-34008683 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 115, 158 |
| Conread position: | 1-170 |
| Cow position: | chr24:43432851-43432686 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1-171 |
| Cow position: | chr24:18484935-18485107 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 108, 29 |
| Conread position: | 1-171 |
| Cow position: | chr24:24662070-24662240 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-171 |
| Cow position: | chr24:29673583-29673410 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-171 |
| Cow position: | chr24:33465560-33465722 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-171 |
| Cow position: | chr24:39523388-39523557 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1-185 |
| Cow position: | chr24:19736273-19736457 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 118, 154 |
| Conread position: | 2-161 |
| Cow position: | chr24:19535196-19535352 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 2-171 |
| Cow position: | chr24:15373465-15373299 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 2-171 |
| Cow position: | chr24:30544806-30544969 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 2-171 |
| Cow position: | chr24:40130189-40130017 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 3-128 |
| Cow position: | chr24:27202147-27202023 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 3-150 |
| Cow position: | chr24:21895108-21894963 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 110, 31 |
| Conread position: | 3-151 |
| Cow position: | chr24:20734083-20733930 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 16 |
| Conread position: | 3-153 |
| Cow position: | chr24:32739211-32739363 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 76 |
| Conread position: | 3-170 |
| Cow position: | chr24:6957555-6957394 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 3-170 |
| Cow position: | chr24:16895378-16895543 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 106, 136 |
| Conread position: | 3-170 |
| Cow position: | chr24:19000106-18999943 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 4-170 |
| Cow position: | chr24:18017285-18017121 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 5-159 |
| Cow position: | chr24:35150575-35150424 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 114, 48 |
| Conread position: | 5-166 |
| Cow position: | chr24:26787905-26787746 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 5-170 |
| Cow position: | chr24:10125929-10125765 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 5-171 |
| Cow position: | chr24:27906496-27906328 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 6-170 |
| Cow position: | chr24:40837828-40837670 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 6-171 |
| Cow position: | chr24:29595753-29595920 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 9-159 |
| Cow position: | chr24:34496174-34496020 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 9-171 |
| Cow position: | chr24:41986048-41985880 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 44 |
| Conread position: | 19-171 |
| Cow position: | chr24:32054704-32054550 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 23-170 |
| Cow position: | chr24:39905417-39905557 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 41-171 |
| Cow position: | chr24:30483927-30484060 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.