Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
| Conread position: | 1-114 |
| Cow position: | chr25:31762525-31762638 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-115 |
| Cow position: | chr25:4009176-4009062 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-119 |
| Cow position: | chr25:13503516-13503397 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-121 |
| Cow position: | chr25:30656566-30656683 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1-139 |
| Cow position: | chr25:24862958-24862820 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-140 |
| Cow position: | chr25:16867324-16867183 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 1-141 |
| Cow position: | chr25:18541863-18542007 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-143 |
| Cow position: | chr25:16714186-16714330 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 1-150 |
| Cow position: | chr25:1824014-1824164 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-150 |
| Cow position: | chr25:15377409-15377257 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 106, 47 |
| Conread position: | 1-151 |
| Cow position: | chr25:17119825-17119677 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 1-151 |
| Cow position: | chr25:33555688-33555540 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1-151 |
| Cow position: | chr25:33686602-33686749 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-152 |
| Cow position: | chr25:18564569-18564421 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-153 |
| Cow position: | chr25:8961853-8961698 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 105, 51 |
| Conread position: | 1-153 |
| Cow position: | chr25:21893421-21893266 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-153 |
| Cow position: | chr25:26089730-26089886 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 114, 89 |
| Conread position: | 1-156 |
| Cow position: | chr25:61733-61586 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 1-156 |
| Cow position: | chr25:7581344-7581497 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 108 |
| Conread position: | 1-156 |
| Cow position: | chr25:21245521-21245676 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-156 |
| Cow position: | chr25:33978137-33978288 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 1-156 |
| Cow position: | chr25:36762188-36762032 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 1-159 |
| Cow position: | chr25:7023251-7023090 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 104, 130 |
| Conread position: | 1-159 |
| Cow position: | chr25:22750924-22751085 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 105, 125 |
| Conread position: | 1-166 |
| Cow position: | chr25:13569094-13569253 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-166 |
| Cow position: | chr25:38135833-38135664 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1-169 |
| Cow position: | chr25:22730911-22730743 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 1-169 |
| Cow position: | chr25:30619146-30618980 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 113, 57 |
| Conread position: | 1-169 |
| Cow position: | chr25:34379022-34379194 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-169 |
| Cow position: | chr25:35052539-35052705 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 127 |
| Conread position: | 1-170 |
| Cow position: | chr25:5846726-5846893 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 1-170 |
| Cow position: | chr25:12305359-12305191 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 116, 153 |
| Conread position: | 1-170 |
| Cow position: | chr25:12807121-12806959 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 113, 40 |
| Conread position: | 1-170 |
| Cow position: | chr25:13672486-13672309 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 18, 164 |
| Conread position: | 1-170 |
| Cow position: | chr25:14513198-14513026 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 159 |
| Conread position: | 1-170 |
| Cow position: | chr25:15440694-15440863 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 73, 83 |
| Conread position: | 1-170 |
| Cow position: | chr25:18905968-18905801 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 1-170 |
| Cow position: | chr25:26654990-26654825 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 51 |
| Conread position: | 1-170 |
| Cow position: | chr25:34242021-34242182 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-170 |
| Cow position: | chr25:36120581-36120417 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 109 |
| Conread position: | 1-171 |
| Cow position: | chr25:1838324-1838150 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 72, 131 |
| Conread position: | 1-171 |
| Cow position: | chr25:5474147-5474310 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 1-171 |
| Cow position: | chr25:13272652-13272479 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-171 |
| Cow position: | chr25:20133231-20133400 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 117, 108 |
| Conread position: | 1-171 |
| Cow position: | chr25:21894802-21894974 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 117, 36 |
| Conread position: | 1-171 |
| Cow position: | chr25:26087604-26087433 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 1-171 |
| Cow position: | chr25:30816972-30816798 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-171 |
| Cow position: | chr25:36081958-36081789 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 117, 74 |
| Conread position: | 1-173 |
| Cow position: | chr25:9269426-9269261 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 116, 51 |
| Conread position: | 1-173 |
| Cow position: | chr25:26051986-26051811 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-183 |
| Cow position: | chr25:11956887-11956709 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 115, 140 |
| Conread position: | 1-194 |
| Cow position: | chr25:23817757-23817956 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 163 |
| Conread position: | 2-148 |
| Cow position: | chr25:10504259-10504403 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 92, 39 |
| Conread position: | 2-153 |
| Cow position: | chr25:16921715-16921865 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 2-159 |
| Cow position: | chr25:11585600-11585441 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 2-159 |
| Cow position: | chr25:14196946-14196784 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 2-159 |
| Cow position: | chr25:28187863-28188022 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 116, 96 |
| Conread position: | 2-159 |
| Cow position: | chr25:33663823-33663983 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 2-166 |
| Cow position: | chr25:17474431-17474596 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 65 |
| Conread position: | 2-170 |
| Cow position: | chr25:12840636-12840807 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 95, 158 |
| Conread position: | 2-170 |
| Cow position: | chr25:20076579-20076408 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 113, 157 |
| Conread position: | 3-148 |
| Cow position: | chr25:37594487-37594339 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 3-159 |
| Cow position: | chr25:19317346-19317185 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 43 |
| Conread position: | 3-169 |
| Cow position: | chr25:9349203-9349366 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-166 |
| Cow position: | chr25:17342538-17342373 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 4-167 |
| Cow position: | chr25:432968-433133 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 8-159 |
| Cow position: | chr25:16064968-16064814 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 8-160 |
| Cow position: | chr25:26701103-26700954 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 8-166 |
| Cow position: | chr25:7806041-7805881 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 9-166 |
| Cow position: | chr25:13443335-13443496 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 9-172 |
| Cow position: | chr25:27801353-27801198 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 12-170 |
| Cow position: | chr25:12252737-12252897 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 19-150 |
| Cow position: | chr25:33256418-33256288 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 19-170 |
| Cow position: | chr25:12081257-12081405 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 48 |
| Conread position: | 19-170 |
| Cow position: | chr25:18988455-18988301 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 95, 141 |
| Conread position: | 19-170 |
| Cow position: | chr25:38425426-38425277 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 22-150 |
| Cow position: | chr25:25753934-25754063 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 27-159 |
| Cow position: | chr25:11679197-11679068 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 87, 26 |
| Conread position: | 36-170 |
| Cow position: | chr25:9956990-9957124 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 121 |
Show alignments to all cow chromosomes.