Cow genome map
| Conread name: | Ss1.1-Tra1-TCH01D020047.5 |
| Conread position: | 1-118 |
| Cow position: | chr26:29664055-29664174 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-138 |
| Cow position: | chr26:17186936-17187069 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 1-143 |
| Cow position: | chr26:25074819-25074677 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-146 |
| Cow position: | chr26:829907-829759 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-148 |
| Cow position: | chr26:4807656-4807516 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 39 |
| Conread position: | 1-150 |
| Cow position: | chr26:11538634-11538483 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 129, 108 |
| Conread position: | 1-150 |
| Cow position: | chr26:15200414-15200563 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 1-150 |
| Cow position: | chr26:24453808-24453954 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-150 |
| Cow position: | chr26:25526351-25526199 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1-150 |
| Cow position: | chr26:32601452-32601304 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 118, 94 |
| Conread position: | 1-151 |
| Cow position: | chr26:25299701-25299552 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1-151 |
| Cow position: | chr26:32815689-32815841 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 112, 26 |
| Conread position: | 1-152 |
| Cow position: | chr26:13818526-13818374 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 36, 146 |
| Conread position: | 1-153 |
| Cow position: | chr26:9604664-9604512 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-156 |
| Cow position: | chr26:1325859-1325713 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1-156 |
| Cow position: | chr26:7315006-7315158 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 1-156 |
| Cow position: | chr26:16922039-16921885 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 1-156 |
| Cow position: | chr26:22602936-22603093 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 89, 97 |
| Conread position: | 1-159 |
| Cow position: | chr26:6865126-6864959 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-159 |
| Cow position: | chr26:8643043-8642888 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 51 |
| Conread position: | 1-159 |
| Cow position: | chr26:21243197-21243045 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 115, 55 |
| Conread position: | 1-159 |
| Cow position: | chr26:26294094-26294253 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 103, 75 |
| Conread position: | 1-159 |
| Cow position: | chr26:32836341-32836184 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1-166 |
| Cow position: | chr26:5246376-5246543 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-170 |
| Cow position: | chr26:9104179-9104345 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 117, 140 |
| Conread position: | 1-170 |
| Cow position: | chr26:10965492-10965663 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 1-170 |
| Cow position: | chr26:12155021-12155183 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 1-170 |
| Cow position: | chr26:12893326-12893491 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1-170 |
| Cow position: | chr26:16550090-16549919 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 113 |
| Conread position: | 1-170 |
| Cow position: | chr26:32670394-32670563 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 108, 40 |
| Conread position: | 1-170 |
| Cow position: | chr26:32776410-32776573 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 116, 25 |
| Conread position: | 1-170 |
| Cow position: | chr26:32834477-32834639 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1-170 |
| Cow position: | chr26:33045183-33045016 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 105, 128 |
| Conread position: | 1-170 |
| Cow position: | chr26:33253214-33253385 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 111, 158 |
| Conread position: | 1-171 |
| Cow position: | chr26:798194-798367 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 1-171 |
| Cow position: | chr26:14905706-14905880 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-171 |
| Cow position: | chr26:19459795-19459616 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1-171 |
| Cow position: | chr26:19774197-19774370 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 93, 112 |
| Conread position: | 1-171 |
| Cow position: | chr26:22152329-22152159 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 138 |
| Conread position: | 1-178 |
| Cow position: | chr26:8699945-8700123 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 2-129 |
| Cow position: | chr26:34580903-34580776 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 116, 52 |
| Conread position: | 2-159 |
| Cow position: | chr26:2739354-2739515 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 76, 133 |
| Conread position: | 2-159 |
| Cow position: | chr26:34060434-34060277 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 119, 107 |
| Conread position: | 2-170 |
| Cow position: | chr26:6475328-6475496 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 114, 29 |
| Conread position: | 2-172 |
| Cow position: | chr26:31633829-31633659 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-150 |
| Cow position: | chr26:6794245-6794101 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 3-151 |
| Cow position: | chr26:2986979-2987125 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 110, 120 |
| Conread position: | 3-170 |
| Cow position: | chr26:8353069-8352895 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 112, 165 |
| Conread position: | 3-170 |
| Cow position: | chr26:18876862-18877023 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 4-148 |
| Cow position: | chr26:23623945-23624091 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 138 |
| Conread position: | 4-152 |
| Cow position: | chr26:10751926-10751777 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 6-171 |
| Cow position: | chr26:22249380-22249546 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 6-178 |
| Cow position: | chr26:22354510-22354338 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-152 |
| Cow position: | chr26:4854639-4854489 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 10-153 |
| Cow position: | chr26:6486558-6486705 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 13-200 |
| Cow position: | chr26:3706882-3706698 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 19-150 |
| Cow position: | chr26:14578411-14578279 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 22-152 |
| Cow position: | chr26:8202931-8202802 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 22-170 |
| Cow position: | chr26:21418371-21418518 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 62, 132 |
| Conread position: | 22-170 |
| Cow position: | chr26:21992183-21992037 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 23-156 |
| Cow position: | chr26:33857114-33857248 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 32-159 |
| Cow position: | chr26:4421428-4421558 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.